CuGenDBv2

Gene ID	Lsi06G006670
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	SART-1 family protein DOT2
Genome location	chr06:10242713..10246903
RNA-Seq Expression	Lsi06G006670
Synteny	Lsi06G006670
Gene Ontology terms	GO:0000481 - maturation of 5S rRNA (biological process) GO:0009908 - flower development (biological process) GO:0009933 - meristem structural organization (biological process) GO:0010087 - phloem or xylem histogenesis (biological process) GO:0010305 - leaf vascular tissue pattern formation (biological process) GO:0010588 - cotyledon vascular tissue pattern formation (biological process) GO:0045292 - mRNA cis splicing, via spliceosome (biological process) GO:0048528 - post-embryonic root development (biological process) GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component)
InterPro domains	IPR005011 - SNU66/SART1 family

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0039246.1 SART-1 family protein DOT2 isoform X2 [Cucumis melo var. makuwa]

9.5e-22

73.49

Show/hide

Query:  EDESKESKSKDSRLSYLVDYKKEIHIERIHELGCIMTPKESFRRLSHKFHGKEPEKMKQEKLIKQYQEELKLNEENEGSSSTI
        EDE KESKSKDSRLS LVDYKKEIHIER  E G IMTPKESFR+LSHKFHGK P KMKQEK +KQYQEELKL +     + ++
Subjt:  EDESKESKSKDSRLSYLVDYKKEIHIERIHELGCIMTPKESFRRLSHKFHGKEPEKMKQEKLIKQYQEELKLNEENEGSSSTI

KAG7030981.1 SART-1 family protein DOT2, partial [Cucurbita argyrosperma subsp. argyrosperma]

2.1e-21

72.29

Show/hide

Query:  EDESKESKSKDSRLSYLVDYKKEIHIERIHELGCIMTPKESFRRLSHKFHGKEPEKMKQEKLIKQYQEELKLNEENEGSSSTI
        EDE KE+KSKDSRLS LVDYKKEIHIER  E G IMTPKESFR+LSHKFHGK P KMKQEK +KQYQEELKL +     + ++
Subjt:  EDESKESKSKDSRLSYLVDYKKEIHIERIHELGCIMTPKESFRRLSHKFHGKEPEKMKQEKLIKQYQEELKLNEENEGSSSTI

XP_008459644.1 PREDICTED: SART-1 family protein DOT2 isoform X2 [Cucumis melo]

9.5e-22

73.49

Show/hide

Query:  EDESKESKSKDSRLSYLVDYKKEIHIERIHELGCIMTPKESFRRLSHKFHGKEPEKMKQEKLIKQYQEELKLNEENEGSSSTI
        EDE KESKSKDSRLS LVDYKKEIHIER  E G IMTPKESFR+LSHKFHGK P KMKQEK +KQYQEELKL +     + ++
Subjt:  EDESKESKSKDSRLSYLVDYKKEIHIERIHELGCIMTPKESFRRLSHKFHGKEPEKMKQEKLIKQYQEELKLNEENEGSSSTI

XP_011656109.1 SART-1 family protein DOT2 [Cucumis sativus]

9.5e-22

73.49

Show/hide

Query:  EDESKESKSKDSRLSYLVDYKKEIHIERIHELGCIMTPKESFRRLSHKFHGKEPEKMKQEKLIKQYQEELKLNEENEGSSSTI
        EDE KESKSKDSRLS LVDYKKEIHIER  E G IMTPKESFR+LSHKFHGK P KMKQEK +KQYQEELKL +     + ++
Subjt:  EDESKESKSKDSRLSYLVDYKKEIHIERIHELGCIMTPKESFRRLSHKFHGKEPEKMKQEKLIKQYQEELKLNEENEGSSSTI

XP_016902433.1 PREDICTED: SART-1 family protein DOT2 isoform X1 [Cucumis melo]

9.5e-22

73.49

Show/hide

Query:  EDESKESKSKDSRLSYLVDYKKEIHIERIHELGCIMTPKESFRRLSHKFHGKEPEKMKQEKLIKQYQEELKLNEENEGSSSTI
        EDE KESKSKDSRLS LVDYKKEIHIER  E G IMTPKESFR+LSHKFHGK P KMKQEK +KQYQEELKL +     + ++
Subjt:  EDESKESKSKDSRLSYLVDYKKEIHIERIHELGCIMTPKESFRRLSHKFHGKEPEKMKQEKLIKQYQEELKLNEENEGSSSTI

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KXY6 Uncharacterized protein

4.6e-22

73.49

Show/hide

Query:  EDESKESKSKDSRLSYLVDYKKEIHIERIHELGCIMTPKESFRRLSHKFHGKEPEKMKQEKLIKQYQEELKLNEENEGSSSTI
        EDE KESKSKDSRLS LVDYKKEIHIER  E G IMTPKESFR+LSHKFHGK P KMKQEK +KQYQEELKL +     + ++
Subjt:  EDESKESKSKDSRLSYLVDYKKEIHIERIHELGCIMTPKESFRRLSHKFHGKEPEKMKQEKLIKQYQEELKLNEENEGSSSTI

A0A1S3CAS5 SART-1 family protein DOT2 isoform X2

4.6e-22

73.49

Show/hide

Query:  EDESKESKSKDSRLSYLVDYKKEIHIERIHELGCIMTPKESFRRLSHKFHGKEPEKMKQEKLIKQYQEELKLNEENEGSSSTI
        EDE KESKSKDSRLS LVDYKKEIHIER  E G IMTPKESFR+LSHKFHGK P KMKQEK +KQYQEELKL +     + ++
Subjt:  EDESKESKSKDSRLSYLVDYKKEIHIERIHELGCIMTPKESFRRLSHKFHGKEPEKMKQEKLIKQYQEELKLNEENEGSSSTI

A0A1S4E2I4 SART-1 family protein DOT2 isoform X1

4.6e-22

73.49

Show/hide

Query:  EDESKESKSKDSRLSYLVDYKKEIHIERIHELGCIMTPKESFRRLSHKFHGKEPEKMKQEKLIKQYQEELKLNEENEGSSSTI
        EDE KESKSKDSRLS LVDYKKEIHIER  E G IMTPKESFR+LSHKFHGK P KMKQEK +KQYQEELKL +     + ++
Subjt:  EDESKESKSKDSRLSYLVDYKKEIHIERIHELGCIMTPKESFRRLSHKFHGKEPEKMKQEKLIKQYQEELKLNEENEGSSSTI

A0A5D3BNU7 SART-1 family protein DOT2 isoform X2

4.6e-22

73.49

Show/hide

Query:  EDESKESKSKDSRLSYLVDYKKEIHIERIHELGCIMTPKESFRRLSHKFHGKEPEKMKQEKLIKQYQEELKLNEENEGSSSTI
        EDE KESKSKDSRLS LVDYKKEIHIER  E G IMTPKESFR+LSHKFHGK P KMKQEK +KQYQEELKL +     + ++
Subjt:  EDESKESKSKDSRLSYLVDYKKEIHIERIHELGCIMTPKESFRRLSHKFHGKEPEKMKQEKLIKQYQEELKLNEENEGSSSTI

A0A6J1IPE4 SART-1 family protein DOT2

1.0e-21

72.29

Show/hide

Query:  EDESKESKSKDSRLSYLVDYKKEIHIERIHELGCIMTPKESFRRLSHKFHGKEPEKMKQEKLIKQYQEELKLNEENEGSSSTI
        EDE KE+KSKDSRLS LVDYKKEIHIER  E G IMTPKESFR+LSHKFHGK P KMKQEK +KQYQEELKL +     + ++
Subjt:  EDESKESKSKDSRLSYLVDYKKEIHIERIHELGCIMTPKESFRRLSHKFHGKEPEKMKQEKLIKQYQEELKLNEENEGSSSTI

SwissProt top hits

e value

%identity

Alignment

O43290 U4/U6.U5 tri-snRNP-associated protein 1

2.0e-06

49.09

Show/hide

Query:  YKKEIHIERIHELGCIMTPKESFRRLSHKFHGKEPEKMKQEKLIKQYQEELKLNE
        YK ++ IE + E G  +TPKE+FR+LSH+FHGK   KMK E+ +K+  EE  L +
Subjt:  YKKEIHIERIHELGCIMTPKESFRRLSHKFHGKEPEKMKQEKLIKQYQEELKLNE

Q5XIW8 U4/U6.U5 tri-snRNP-associated protein 1

2.0e-06

49.09

Show/hide

Query:  YKKEIHIERIHELGCIMTPKESFRRLSHKFHGKEPEKMKQEKLIKQYQEELKLNE
        YK ++ IE + E G  +TPKE+FR+LSH+FHGK   KMK E+ +K+  EE  L +
Subjt:  YKKEIHIERIHELGCIMTPKESFRRLSHKFHGKEPEKMKQEKLIKQYQEELKLNE

Q9LFE0 SART-1 family protein DOT2

1.3e-13

59.46

Show/hide

Query:  EDESKESKSKDSRLSYLVDYKKEIHIERIHELGCIMTPKESFRRLSHKFHGKEPEKMKQEKLIKQYQEELKLNE
        +D  KESK K+S+     D  K+I IER  E G  +TPKE+FR LSHKFHGK P KMK+EK +KQYQEELKL +
Subjt:  EDESKESKSKDSRLSYLVDYKKEIHIERIHELGCIMTPKESFRRLSHKFHGKEPEKMKQEKLIKQYQEELKLNE

Q9Z315 U4/U6.U5 tri-snRNP-associated protein 1

2.0e-06

49.09

Show/hide

Query:  YKKEIHIERIHELGCIMTPKESFRRLSHKFHGKEPEKMKQEKLIKQYQEELKLNE
        YK ++ IE + E G  +TPKE+FR+LSH+FHGK   KMK E+ +K+  EE  L +
Subjt:  YKKEIHIERIHELGCIMTPKESFRRLSHKFHGKEPEKMKQEKLIKQYQEELKLNE

Arabidopsis top hits

e value

%identity

Alignment

AT3G14700.1 SART-1 family

1.3e-08

39.33

Show/hide

Query:  KESKSKDSRLSYLVDYKKEIHIERIHELGCIMTPKESFRRLSHKFHGKEPEKMKQEKLIKQYQEELKLNEENEGSSSTIKDPLSCSQWP
        K++  +D R     D  K+I I+R+++ G IMT KE++R L H FHGK P K KQEK  K+++++ K  E +E S   I++  + S+ P
Subjt:  KESKSKDSRLSYLVDYKKEIHIERIHELGCIMTPKESFRRLSHKFHGKEPEKMKQEKLIKQYQEELKLNEENEGSSSTIKDPLSCSQWP

AT5G16780.1 SART-1 family

9.1e-15

59.46

Show/hide

Query:  EDESKESKSKDSRLSYLVDYKKEIHIERIHELGCIMTPKESFRRLSHKFHGKEPEKMKQEKLIKQYQEELKLNE
        +D  KESK K+S+     D  K+I IER  E G  +TPKE+FR LSHKFHGK P KMK+EK +KQYQEELKL +
Subjt:  EDESKESKSKDSRLSYLVDYKKEIHIERIHELGCIMTPKESFRRLSHKFHGKEPEKMKQEKLIKQYQEELKLNE

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTATCATGAAGATGAATCGAAGGAATCTAAGTCGAAGGATTCTCGTTTATCTTATCTGGTTGATTACAAAAAGGAGATCCACATTGAGAGGATTCATGAATTGGGGTG
TATTATGACTCCAAAGGAGTCGTTTCGACGACTCTCTCACAAGTTCCATGGGAAGGAACCTGAAAAAATGAAGCAAGAAAAGCTCATCAAACAATACCAAGAAGAGTTGA
AGTTGAATGAAGAGAATGAGGGAAGCTCAAGCACAATTAAAGACCCCTTATCTTGTTCTCAGTGGCCACGTTAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MYHEDESKESKSKDSRLSYLVDYKKEIHIERIHELGCIMTPKESFRRLSHKFHGKEPEKMKQEKLIKQYQEELKLNEENEGSSSTIKDPLSCSQWPR

Lsi06G006670 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome