CuGenDBv2

Gene ID	Lsi06G006730
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Acetohydroxy-acid synthase small subunit
Genome location	chr06:10432135..10432362
RNA-Seq Expression	Lsi06G006730
Synteny	Lsi06G006730
Gene Ontology terms	GO:0009097 - isoleucine biosynthetic process (biological process) GO:0009099 - valine biosynthetic process (biological process) GO:0050790 - regulation of catalytic activity (biological process) GO:0005737 - cytoplasm (cellular component) GO:1990610 - acetolactate synthase regulator activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0038202.1 acetolactate synthase small subunit 1 [Cucumis melo var. makuwa]

2.2e-26

89.33

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Query:  MAAAVALCPAPVKAHKPGYSALASRNVFSTSLIAEYQKVQKWNRFELRRLQVSSAAVNDNAVTVTDSSRPPIRST
        MAAAVALCPAPVKAHKP YSALASR+ FSTSLI +YQKVQKWNRFE +RLQVSSAAVNDNAVTVTDSSRP IRST
Subjt:  MAAAVALCPAPVKAHKPGYSALASRNVFSTSLIAEYQKVQKWNRFELRRLQVSSAAVNDNAVTVTDSSRPPIRST

XP_004139096.1 acetolactate synthase small subunit 1, chloroplastic [Cucumis sativus]

6.4e-26

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Query:  MAAAVALCPAPVKAHKPGYSALASRNVFSTSLIAEYQKVQKWNRFELRRLQVSSAAVNDNAVTVTDSSRPPIRST
        MAAAVALCPAPVKAHKP YSALASR+ FSTSLI +YQ+VQKWNRFE +RLQVSSAAVNDNAVTVTDSSRP IRST
Subjt:  MAAAVALCPAPVKAHKPGYSALASRNVFSTSLIAEYQKVQKWNRFELRRLQVSSAAVNDNAVTVTDSSRPPIRST

XP_008443657.1 PREDICTED: acetolactate synthase small subunit 1, chloroplastic-like [Cucumis melo]

2.2e-26

89.33

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Query:  MAAAVALCPAPVKAHKPGYSALASRNVFSTSLIAEYQKVQKWNRFELRRLQVSSAAVNDNAVTVTDSSRPPIRST
        MAAAVALCPAPVKAHKP YSALASR+ FSTSLI +YQKVQKWNRFE +RLQVSSAAVNDNAVTVTDSSRP IRST
Subjt:  MAAAVALCPAPVKAHKPGYSALASRNVFSTSLIAEYQKVQKWNRFELRRLQVSSAAVNDNAVTVTDSSRPPIRST

XP_038880022.1 acetolactate synthase small subunit 2, chloroplastic-like isoform X1 [Benincasa hispida]

1.4e-28

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Query:  MAAAVALCPAPVKAHKPGYSALASRNVFSTSLIAEYQKVQKWNRFELRRLQVSSAAVNDNAVTVTDSSRPPIRST
        MAAAVALCP PVKAHKPGYSA+ SRN FSTSLI EYQKVQKWNRFELRRLQVSSAAVNDNAVTV+DSSRPPIRST
Subjt:  MAAAVALCPAPVKAHKPGYSALASRNVFSTSLIAEYQKVQKWNRFELRRLQVSSAAVNDNAVTVTDSSRPPIRST

XP_038880023.1 acetolactate synthase small subunit 2, chloroplastic-like isoform X2 [Benincasa hispida]

1.4e-28

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Query:  MAAAVALCPAPVKAHKPGYSALASRNVFSTSLIAEYQKVQKWNRFELRRLQVSSAAVNDNAVTVTDSSRPPIRST
        MAAAVALCP PVKAHKPGYSA+ SRN FSTSLI EYQKVQKWNRFELRRLQVSSAAVNDNAVTV+DSSRPPIRST
Subjt:  MAAAVALCPAPVKAHKPGYSALASRNVFSTSLIAEYQKVQKWNRFELRRLQVSSAAVNDNAVTVTDSSRPPIRST

TrEMBL top hits

e value

%identity

Alignment

A0A0A0M346 Acetohydroxy-acid synthase small subunit

3.1e-26

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Query:  MAAAVALCPAPVKAHKPGYSALASRNVFSTSLIAEYQKVQKWNRFELRRLQVSSAAVNDNAVTVTDSSRPPIRST
        MAAAVALCPAPVKAHKP YSALASR+ FSTSLI +YQ+VQKWNRFE +RLQVSSAAVNDNAVTVTDSSRP IRST
Subjt:  MAAAVALCPAPVKAHKPGYSALASRNVFSTSLIAEYQKVQKWNRFELRRLQVSSAAVNDNAVTVTDSSRPPIRST

A0A1S3B8L7 Acetohydroxy-acid synthase small subunit

1.1e-26

89.33

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Query:  MAAAVALCPAPVKAHKPGYSALASRNVFSTSLIAEYQKVQKWNRFELRRLQVSSAAVNDNAVTVTDSSRPPIRST
        MAAAVALCPAPVKAHKP YSALASR+ FSTSLI +YQKVQKWNRFE +RLQVSSAAVNDNAVTVTDSSRP IRST
Subjt:  MAAAVALCPAPVKAHKPGYSALASRNVFSTSLIAEYQKVQKWNRFELRRLQVSSAAVNDNAVTVTDSSRPPIRST

A0A5A7T3Z5 Acetohydroxy-acid synthase small subunit

1.1e-26

89.33

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Query:  MAAAVALCPAPVKAHKPGYSALASRNVFSTSLIAEYQKVQKWNRFELRRLQVSSAAVNDNAVTVTDSSRPPIRST
        MAAAVALCPAPVKAHKP YSALASR+ FSTSLI +YQKVQKWNRFE +RLQVSSAAVNDNAVTVTDSSRP IRST
Subjt:  MAAAVALCPAPVKAHKPGYSALASRNVFSTSLIAEYQKVQKWNRFELRRLQVSSAAVNDNAVTVTDSSRPPIRST

A0A6J1HBD4 Acetohydroxy-acid synthase small subunit

1.5e-17

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Query:  MAAAVALCPAPVKAHKPGYSALASRNVFSTSLIAEYQKVQKWNRFELRRLQVSSAAVNDNAVTVTDSSRPPIRST
        MAAAV L PA V A KP Y A+ASRNVFS +LI EY+KVQKWNRFEL+R QVSSAA N +AVTV+DSSR  IRS+
Subjt:  MAAAVALCPAPVKAHKPGYSALASRNVFSTSLIAEYQKVQKWNRFELRRLQVSSAAVNDNAVTVTDSSRPPIRST

A0A6J1JLL8 Acetohydroxy-acid synthase small subunit

2.0e-17

70.67

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Query:  MAAAVALCPAPVKAHKPGYSALASRNVFSTSLIAEYQKVQKWNRFELRRLQVSSAAVNDNAVTVTDSSRPPIRST
        MAAAV LCPA V A KP Y A+ SRN  S SLI EY+KVQKWNRFEL+R QVSSAA N +AVTV+DSSR  IRS+
Subjt:  MAAAVALCPAPVKAHKPGYSALASRNVFSTSLIAEYQKVQKWNRFELRRLQVSSAAVNDNAVTVTDSSRPPIRST

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGCGGCCGCCGTAGCGCTTTGCCCAGCTCCCGTAAAAGCTCACAAACCTGGCTATTCTGCACTTGCCTCTAGAAATGTCTTCTCTACAAGTTTGATCGCTGAGTACCA
GAAAGTGCAGAAATGGAACCGTTTCGAGCTCCGGAGGCTGCAGGTCTCTTCTGCTGCTGTTAATGATAATGCAGTGACTGTAACCGACTCTTCTCGTCCCCCCATTCGTT
CTACGTAA

mRNA sequence

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Protein sequence

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MAAAVALCPAPVKAHKPGYSALASRNVFSTSLIAEYQKVQKWNRFELRRLQVSSAAVNDNAVTVTDSSRPPIRST

Lsi06G006730 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome