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Lsi06G006790 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi06G006790
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionDExH-box ATP-dependent RNA helicase DExH5, mitochondrial
Genome locationchr06:10551407..10560637
RNA-Seq ExpressionLsi06G006790
SyntenyLsi06G006790
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034595.1 DExH-box ATP-dependent RNA helicase DExH5 [Cucumis melo var. makuwa]5.9e-2052.17Show/hide
Query:  LPFVDKLANLHSIEFEFGSVKPILTVVARPNVKDPFLTPLKKKDVVQLVEA------IDSLR--------KEVEKNFGGYDIYWKNFLSVQSVKAIDSLR
        LP   KL  +  +   F  + PILTVVA  +V+DPFLTPL+KKD  +  ++       D L         KE E+N+GGYD  WKNFLS+QS+KAIDSLR
Subjt:  LPFVDKLANLHSIEFEFGSVKPILTVVARPNVKDPFLTPLKKKDVVQLVEA------IDSLR--------KEVEKNFGGYDIYWKNFLSVQSVKAIDSLR

Query:  KEFFSLLKDIGLVNG
        KEFFSLL+D GLV+G
Subjt:  KEFFSLLKDIGLVNG

TYK09146.1 DExH-box ATP-dependent RNA helicase DExH5 [Cucumis melo var. makuwa]5.9e-2052.17Show/hide
Query:  LPFVDKLANLHSIEFEFGSVKPILTVVARPNVKDPFLTPLKKKDVVQLVEA------IDSLR--------KEVEKNFGGYDIYWKNFLSVQSVKAIDSLR
        LP   KL  +  +   F  + PILTVVA  +V+DPFLTPL+KKD  +  ++       D L         KE E+N+GGYD  WKNFLS+QS+KAIDSLR
Subjt:  LPFVDKLANLHSIEFEFGSVKPILTVVARPNVKDPFLTPLKKKDVVQLVEA------IDSLR--------KEVEKNFGGYDIYWKNFLSVQSVKAIDSLR

Query:  KEFFSLLKDIGLVNG
        KEFFSLL+D GLV+G
Subjt:  KEFFSLLKDIGLVNG

XP_008446652.1 PREDICTED: DExH-box ATP-dependent RNA helicase DExH5, mitochondrial isoform X1 [Cucumis melo]5.9e-2052.17Show/hide
Query:  LPFVDKLANLHSIEFEFGSVKPILTVVARPNVKDPFLTPLKKKDVVQLVEA------IDSLR--------KEVEKNFGGYDIYWKNFLSVQSVKAIDSLR
        LP   KL  +  +   F  + PILTVVA  +V+DPFLTPL+KKD  +  ++       D L         KE E+N+GGYD  WKNFLS+QS+KAIDSLR
Subjt:  LPFVDKLANLHSIEFEFGSVKPILTVVARPNVKDPFLTPLKKKDVVQLVEA------IDSLR--------KEVEKNFGGYDIYWKNFLSVQSVKAIDSLR

Query:  KEFFSLLKDIGLVNG
        KEFFSLL+D GLV+G
Subjt:  KEFFSLLKDIGLVNG

XP_008446653.1 PREDICTED: DExH-box ATP-dependent RNA helicase DExH5, mitochondrial isoform X2 [Cucumis melo]5.9e-2052.17Show/hide
Query:  LPFVDKLANLHSIEFEFGSVKPILTVVARPNVKDPFLTPLKKKDVVQLVEA------IDSLR--------KEVEKNFGGYDIYWKNFLSVQSVKAIDSLR
        LP   KL  +  +   F  + PILTVVA  +V+DPFLTPL+KKD  +  ++       D L         KE E+N+GGYD  WKNFLS+QS+KAIDSLR
Subjt:  LPFVDKLANLHSIEFEFGSVKPILTVVARPNVKDPFLTPLKKKDVVQLVEA------IDSLR--------KEVEKNFGGYDIYWKNFLSVQSVKAIDSLR

Query:  KEFFSLLKDIGLVNG
        KEFFSLL+D GLV+G
Subjt:  KEFFSLLKDIGLVNG

XP_038892223.1 DExH-box ATP-dependent RNA helicase DExH5, mitochondrial [Benincasa hispida]6.9e-2154.78Show/hide
Query:  LPFVDKLANLHSIEFEFGSVKPILTVVARPNVKDPFLTPLKKKDVVQLVEA------IDSLR--------KEVEKNFGGYDIYWKNFLSVQSVKAIDSLR
        LP   KL  +  +   F  + PILTVVA  +V+DPFLTPL+KKDV +  ++       D L         KE E+NFGGYD  WKNFLSVQS+KAIDSLR
Subjt:  LPFVDKLANLHSIEFEFGSVKPILTVVARPNVKDPFLTPLKKKDVVQLVEA------IDSLR--------KEVEKNFGGYDIYWKNFLSVQSVKAIDSLR

Query:  KEFFSLLKDIGLVNG
        KEFFSLL+D GLV+G
Subjt:  KEFFSLLKDIGLVNG

TrEMBL top hitse value%identityAlignment
A0A0A0KWI1 Uncharacterized protein4.8e-2051.3Show/hide
Query:  LPFVDKLANLHSIEFEFGSVKPILTVVARPNVKDPFLTPLKKKDVVQLVEA------IDSLR--------KEVEKNFGGYDIYWKNFLSVQSVKAIDSLR
        LP   KL  +  +   F  + PI+TVVA  +V+DPFLTPL+KKD  +  ++       D L         KE E+N+GGYD  WKNFLS+QS+KAIDSLR
Subjt:  LPFVDKLANLHSIEFEFGSVKPILTVVARPNVKDPFLTPLKKKDVVQLVEA------IDSLR--------KEVEKNFGGYDIYWKNFLSVQSVKAIDSLR

Query:  KEFFSLLKDIGLVNG
        KEFFSLL+D GLV+G
Subjt:  KEFFSLLKDIGLVNG

A0A1S3BF36 DExH-box ATP-dependent RNA helicase DExH5, mitochondrial isoform X12.8e-2052.17Show/hide
Query:  LPFVDKLANLHSIEFEFGSVKPILTVVARPNVKDPFLTPLKKKDVVQLVEA------IDSLR--------KEVEKNFGGYDIYWKNFLSVQSVKAIDSLR
        LP   KL  +  +   F  + PILTVVA  +V+DPFLTPL+KKD  +  ++       D L         KE E+N+GGYD  WKNFLS+QS+KAIDSLR
Subjt:  LPFVDKLANLHSIEFEFGSVKPILTVVARPNVKDPFLTPLKKKDVVQLVEA------IDSLR--------KEVEKNFGGYDIYWKNFLSVQSVKAIDSLR

Query:  KEFFSLLKDIGLVNG
        KEFFSLL+D GLV+G
Subjt:  KEFFSLLKDIGLVNG

A0A1S3BFL6 DExH-box ATP-dependent RNA helicase DExH5, mitochondrial isoform X22.8e-2052.17Show/hide
Query:  LPFVDKLANLHSIEFEFGSVKPILTVVARPNVKDPFLTPLKKKDVVQLVEA------IDSLR--------KEVEKNFGGYDIYWKNFLSVQSVKAIDSLR
        LP   KL  +  +   F  + PILTVVA  +V+DPFLTPL+KKD  +  ++       D L         KE E+N+GGYD  WKNFLS+QS+KAIDSLR
Subjt:  LPFVDKLANLHSIEFEFGSVKPILTVVARPNVKDPFLTPLKKKDVVQLVEA------IDSLR--------KEVEKNFGGYDIYWKNFLSVQSVKAIDSLR

Query:  KEFFSLLKDIGLVNG
        KEFFSLL+D GLV+G
Subjt:  KEFFSLLKDIGLVNG

A0A5A7SZF7 DExH-box ATP-dependent RNA helicase DExH52.8e-2052.17Show/hide
Query:  LPFVDKLANLHSIEFEFGSVKPILTVVARPNVKDPFLTPLKKKDVVQLVEA------IDSLR--------KEVEKNFGGYDIYWKNFLSVQSVKAIDSLR
        LP   KL  +  +   F  + PILTVVA  +V+DPFLTPL+KKD  +  ++       D L         KE E+N+GGYD  WKNFLS+QS+KAIDSLR
Subjt:  LPFVDKLANLHSIEFEFGSVKPILTVVARPNVKDPFLTPLKKKDVVQLVEA------IDSLR--------KEVEKNFGGYDIYWKNFLSVQSVKAIDSLR

Query:  KEFFSLLKDIGLVNG
        KEFFSLL+D GLV+G
Subjt:  KEFFSLLKDIGLVNG

A0A5D3CFK3 DExH-box ATP-dependent RNA helicase DExH52.8e-2052.17Show/hide
Query:  LPFVDKLANLHSIEFEFGSVKPILTVVARPNVKDPFLTPLKKKDVVQLVEA------IDSLR--------KEVEKNFGGYDIYWKNFLSVQSVKAIDSLR
        LP   KL  +  +   F  + PILTVVA  +V+DPFLTPL+KKD  +  ++       D L         KE E+N+GGYD  WKNFLS+QS+KAIDSLR
Subjt:  LPFVDKLANLHSIEFEFGSVKPILTVVARPNVKDPFLTPLKKKDVVQLVEA------IDSLR--------KEVEKNFGGYDIYWKNFLSVQSVKAIDSLR

Query:  KEFFSLLKDIGLVNG
        KEFFSLL+D GLV+G
Subjt:  KEFFSLLKDIGLVNG

SwissProt top hitse value%identityAlignment
F4HYJ7 DExH-box ATP-dependent RNA helicase DExH31.6e-1539.32Show/hide
Query:  LPFVDKLANLHSIEFEFGSVKPILTVVARPNVKDPFLTPLKKKDVVQLVEAIDSLR---------------KEVEKNFGGYDIYWKNFLSVQSVKAIDSL
        LP   KL  +  +   F  + P++TVVA  +V+DPFL P  KKD+ +   +  S R               K+ E+   GYD  WKNFLS Q++KA+DS+
Subjt:  LPFVDKLANLHSIEFEFGSVKPILTVVARPNVKDPFLTPLKKKDVVQLVEAIDSLR---------------KEVEKNFGGYDIYWKNFLSVQSVKAIDSL

Query:  RKEFFSLLKDIGLVNGI
        RK+FF+LLK+  L++ I
Subjt:  RKEFFSLLKDIGLVNGI

F4ILR7 DExH-box ATP-dependent RNA helicase DExH13.2e-0527.59Show/hide
Query:  LPFVDKLANLHSIEFEFGSVKPILTVVARPNVKDPFLTPLKKK----------------DVVQLVEAIDSLRKEVEKNFGGYDIYWKNFLSVQSVKAIDS
        LP    +  +  I   F  V P LT+ A    + PF+ PL +K                D + L++A +  R + ++     D  W+NFLS  +++ ++ 
Subjt:  LPFVDKLANLHSIEFEFGSVKPILTVVARPNVKDPFLTPLKKK----------------DVVQLVEAIDSLRKEVEKNFGGYDIYWKNFLSVQSVKAIDS

Query:  LRKEFFSLLKDIGLVN
        +R +F  LL DIG V+
Subjt:  LRKEFFSLLKDIGLVN

F4IM84 DExH-box ATP-dependent RNA helicase DExH5, mitochondrial2.0e-1845.53Show/hide
Query:  LPFVDKLANLHSIEFEFGSVKPILTVVARPNVKDPFLTPLKKKDVVQ---------------LVEAIDSLRKEVEKNFGGYDIYWKNFLSVQSVKAIDSL
        LP   KL  +  +    G + PILTV A  +V+DPFLTP  KKD+ +               LV A +  +K  E+    YD  WKNFLS+QS++AIDSL
Subjt:  LPFVDKLANLHSIEFEFGSVKPILTVVARPNVKDPFLTPLKKKDVVQ---------------LVEAIDSLRKEVEKNFGGYDIYWKNFLSVQSVKAIDSL

Query:  RKEFFSLLKDIGLVNGITSYATS
        RKEFFSLLKD GL++G  S   S
Subjt:  RKEFFSLLKDIGLVNGITSYATS

Arabidopsis top hitse value%identityAlignment
AT1G48650.1 DEA(D/H)-box RNA helicase family protein1.1e-1639.32Show/hide
Query:  LPFVDKLANLHSIEFEFGSVKPILTVVARPNVKDPFLTPLKKKDVVQLVEAIDSLR---------------KEVEKNFGGYDIYWKNFLSVQSVKAIDSL
        LP   KL  +  +   F  + P++TVVA  +V+DPFL P  KKD+ +   +  S R               K+ E+   GYD  WKNFLS Q++KA+DS+
Subjt:  LPFVDKLANLHSIEFEFGSVKPILTVVARPNVKDPFLTPLKKKDVVQLVEAIDSLR---------------KEVEKNFGGYDIYWKNFLSVQSVKAIDSL

Query:  RKEFFSLLKDIGLVNGI
        RK+FF+LLK+  L++ I
Subjt:  RKEFFSLLKDIGLVNGI

AT1G48650.2 DEA(D/H)-box RNA helicase family protein1.1e-1639.32Show/hide
Query:  LPFVDKLANLHSIEFEFGSVKPILTVVARPNVKDPFLTPLKKKDVVQLVEAIDSLR---------------KEVEKNFGGYDIYWKNFLSVQSVKAIDSL
        LP   KL  +  +   F  + P++TVVA  +V+DPFL P  KKD+ +   +  S R               K+ E+   GYD  WKNFLS Q++KA+DS+
Subjt:  LPFVDKLANLHSIEFEFGSVKPILTVVARPNVKDPFLTPLKKKDVVQLVEAIDSLR---------------KEVEKNFGGYDIYWKNFLSVQSVKAIDSL

Query:  RKEFFSLLKDIGLVNGI
        RK+FF+LLK+  L++ I
Subjt:  RKEFFSLLKDIGLVNGI

AT2G01130.1 DEA(D/H)-box RNA helicase family protein1.4e-1945.53Show/hide
Query:  LPFVDKLANLHSIEFEFGSVKPILTVVARPNVKDPFLTPLKKKDVVQ---------------LVEAIDSLRKEVEKNFGGYDIYWKNFLSVQSVKAIDSL
        LP   KL  +  +    G + PILTV A  +V+DPFLTP  KKD+ +               LV A +  +K  E+    YD  WKNFLS+QS++AIDSL
Subjt:  LPFVDKLANLHSIEFEFGSVKPILTVVARPNVKDPFLTPLKKKDVVQ---------------LVEAIDSLRKEVEKNFGGYDIYWKNFLSVQSVKAIDSL

Query:  RKEFFSLLKDIGLVNGITSYATS
        RKEFFSLLKD GL++G  S   S
Subjt:  RKEFFSLLKDIGLVNGITSYATS

AT2G35920.1 RNA helicase family protein2.3e-0627.59Show/hide
Query:  LPFVDKLANLHSIEFEFGSVKPILTVVARPNVKDPFLTPLKKK----------------DVVQLVEAIDSLRKEVEKNFGGYDIYWKNFLSVQSVKAIDS
        LP    +  +  I   F  V P LT+ A    + PF+ PL +K                D + L++A +  R + ++     D  W+NFLS  +++ ++ 
Subjt:  LPFVDKLANLHSIEFEFGSVKPILTVVARPNVKDPFLTPLKKK----------------DVVQLVEAIDSLRKEVEKNFGGYDIYWKNFLSVQSVKAIDS

Query:  LRKEFFSLLKDIGLVN
        +R +F  LL DIG V+
Subjt:  LRKEFFSLLKDIGLVN

AT5G04895.1 DEA(D/H)-box RNA helicase family protein4.8e-1237.07Show/hide
Query:  LPFVDKLANLHSIEFEFGSVKPILTVVARPNVKDPFLTPLKKKDV----------------VQLVEAIDSLRKEVEKNFGGYDIYWKNFLSVQSVKAIDS
        LP   KL  +  +   F    PILT+V+  +V+DPFL P  KKD+                + LV A +   K+ E+    Y+  W+NFLS Q+++AI S
Subjt:  LPFVDKLANLHSIEFEFGSVKPILTVVARPNVKDPFLTPLKKKDV----------------VQLVEAIDSLRKEVEKNFGGYDIYWKNFLSVQSVKAIDS

Query:  LRKEFFSLLKDIGLVN
        LRK+F  +LK+ GLV+
Subjt:  LRKEFFSLLKDIGLVN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGTTGGCTCGGTTGTTCTTTATTTCAGTGGAAGGGATCTGTATGCTGTGATCGTTCTTATTTACCCAAGAGTTGGCTCGATCTGCATAGAAATTTCCATTGTTCA
AGGCTTGCCTTTTGTTGATAAATTGGCTAATCTACACTCTATTGAGTTTGAATTTGGATCTGTGAAACCAATTTTGACCGTTGTTGCTCGTCCCAATGTGAAAGACCCTT
TTCTAACACCACTTAAGAAGAAGGATGTTGTACAATTAGTGGAGGCTATTGATTCACTAAGGAAAGAAGTTGAGAAGAACTTTGGTGGATATGACATCTATTGGAAGAAC
TTTCTTTCTGTACAATCAGTGAAAGCTATTGATTCACTAAGGAAGGAGTTCTTTTCTTTGCTTAAAGATATTGGCTTGGTCAATGGTATAACATCGTATGCAACCTCCAG
GGAAGCCCCAGTACTTTCCAAATTTGATCTAAATCTCTTGAATGGATTCCCAACTGGCCATGTGATGCGCAATACTCAGGCGCCTGAGATGAATCTGAGCTCCTTCGATG
TCCCCGAGAGCCAAAAGACCTCTCTGTTCAAGAGAGCCATCAGCTTGCAGAACGCTTTCACTTCTTGTTACTGCACCAATATCCTTGTTCAAGCTACCGGTTGGGTTGCT
TCTGTATTCTTTATCAAAAGACAAGATAACAGGAAATGGACTATTCCGAAATTGATTATCTATCTGAAGAGATAG
mRNA sequenceShow/hide mRNA sequence
ATGAAGGTTGGCTCGGTTGTTCTTTATTTCAGTGGAAGGGATCTGTATGCTGTGATCGTTCTTATTTACCCAAGAGTTGGCTCGATCTGCATAGAAATTTCCATTGTTCA
AGGCTTGCCTTTTGTTGATAAATTGGCTAATCTACACTCTATTGAGTTTGAATTTGGATCTGTGAAACCAATTTTGACCGTTGTTGCTCGTCCCAATGTGAAAGACCCTT
TTCTAACACCACTTAAGAAGAAGGATGTTGTACAATTAGTGGAGGCTATTGATTCACTAAGGAAAGAAGTTGAGAAGAACTTTGGTGGATATGACATCTATTGGAAGAAC
TTTCTTTCTGTACAATCAGTGAAAGCTATTGATTCACTAAGGAAGGAGTTCTTTTCTTTGCTTAAAGATATTGGCTTGGTCAATGGTATAACATCGTATGCAACCTCCAG
GGAAGCCCCAGTACTTTCCAAATTTGATCTAAATCTCTTGAATGGATTCCCAACTGGCCATGTGATGCGCAATACTCAGGCGCCTGAGATGAATCTGAGCTCCTTCGATG
TCCCCGAGAGCCAAAAGACCTCTCTGTTCAAGAGAGCCATCAGCTTGCAGAACGCTTTCACTTCTTGTTACTGCACCAATATCCTTGTTCAAGCTACCGGTTGGGTTGCT
TCTGTATTCTTTATCAAAAGACAAGATAACAGGAAATGGACTATTCCGAAATTGATTATCTATCTGAAGAGATAG
Protein sequenceShow/hide protein sequence
MKVGSVVLYFSGRDLYAVIVLIYPRVGSICIEISIVQGLPFVDKLANLHSIEFEFGSVKPILTVVARPNVKDPFLTPLKKKDVVQLVEAIDSLRKEVEKNFGGYDIYWKN
FLSVQSVKAIDSLRKEFFSLLKDIGLVNGITSYATSREAPVLSKFDLNLLNGFPTGHVMRNTQAPEMNLSSFDVPESQKTSLFKRAISLQNAFTSCYCTNILVQATGWVA
SVFFIKRQDNRKWTIPKLIIYLKR