CuGenDBv2

Gene ID	Lsi06G006950
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	seipin-1
Genome location	chr06:11055275..11055892
RNA-Seq Expression	Lsi06G006950
Synteny	Lsi06G006950
Gene Ontology terms	GO:0006629 - lipid metabolic process (biological process) GO:0009846 - pollen germination (biological process) GO:0010162 - seed dormancy process (biological process) GO:0010344 - seed oilbody biogenesis (biological process) GO:0080155 - regulation of double fertilization forming a zygote and endosperm (biological process) GO:0140042 - lipid droplet formation (biological process) GO:0030176 - integral component of endoplasmic reticulum membrane (cellular component)
InterPro domains	IPR009617 - Seipin family

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004139167.1 seipin-1 [Cucumis sativus]

3.7e-68

76.17

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Query:  MDSDNELEEPNRQIQ--KPSDFFNKIVFLQADLIYNAITFLIAPASTLLSLITESFHRVEETKCTVESAVRKSPSAMALQVRVAVRRLSYGVVAAALMCM
        MDSD ELEEPNRQIQ  KP+DFFNK+VFLQADLIYNA+ F+IAPA TLLSL  ESF R EETK TVESAVRKSPS +A +V+VA RR+SYG VAA +MCM
Subjt:  MDSDNELEEPNRQIQ--KPSDFFNKIVFLQADLIYNAITFLIAPASTLLSLITESFHRVEETKCTVESAVRKSPSAMALQVRVAVRRLSYGVVAAALMCM

Query:  VMVLLLVVAAAVSGLAIRYWMEEPVVLREKLNFDYTQARPRALFGMENG--MK-KRRNLGIPVGHTFFVCAVLLMPESQFNREFGVFQVMYEI
        VMVLLLVVA  VSGL IRYW+EEPV ++EKL FDYT+ARPRALFG  NG  MK K++NLGIPVGHTF+VC VLLMPESQFNREFGVFQ+  E+
Subjt:  VMVLLLVVAAAVSGLAIRYWMEEPVVLREKLNFDYTQARPRALFGMENG--MK-KRRNLGIPVGHTFFVCAVLLMPESQFNREFGVFQVMYEI

XP_008443693.1 PREDICTED: seipin-1 [Cucumis melo]

2.3e-70

76.41

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Query:  MDSDNELEEPNR----QIQKPSDFFNKIVFLQADLIYNAITFLIAPASTLLSLITESFHRVEETKCTVESAVRKSPSAMALQVRVAVRRLSYGVVAAALM
        MDSDN+L+EPNR    QIQKP+DFFNK+VFLQADLIYNA+ F+IAPASTLLSL  ESF R EETK TVESAVRKSPS +A +V+VAVRR+SYG VAA +M
Subjt:  MDSDNELEEPNR----QIQKPSDFFNKIVFLQADLIYNAITFLIAPASTLLSLITESFHRVEETKCTVESAVRKSPSAMALQVRVAVRRLSYGVVAAALM

Query:  CMVMVLLLVVAAAVSGLAIRYWMEEPVVLREKLNFDYTQARPRALFGMENG--MK-KRRNLGIPVGHTFFVCAVLLMPESQFNREFGVFQVMYEI
        CMVMVLLL+VA  VSGL IRYW+EEPV ++EKL FDYT+ARPRALFGM NG  MK K++NLGIPVGHTFFVC VLLMPESQFNREFGVFQ+  E+
Subjt:  CMVMVLLLVVAAAVSGLAIRYWMEEPVVLREKLNFDYTQARPRALFGMENG--MK-KRRNLGIPVGHTFFVCAVLLMPESQFNREFGVFQVMYEI

XP_023520654.1 seipin-1 [Cucurbita pepo subsp. pepo]

1.5e-61

69.79

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Query:  MDSDNELEEPNRQIQKPSDFFNKIVFLQADLIYNAITFLIAPASTLLSLITESFHRVEETKCTVESAVRKSPSAMALQVRVAVRRLSYGVVAAALMCMVM
        MD D+EL++  R I KPSD FNKIVFLQADLIY+AI FLIAP STLLSLI+ESFHR EE K TVE AVRKSPSA+A +VR+AVRRLSYG+VAAA MCM+M
Subjt:  MDSDNELEEPNRQIQKPSDFFNKIVFLQADLIYNAITFLIAPASTLLSLITESFHRVEETKCTVESAVRKSPSAMALQVRVAVRRLSYGVVAAALMCMVM

Query:  VLLLVVAAAVSGLAIRYWMEEPVVLREKLNFDYTQARPRALFGME----NGMKKRRNLGIPVGHTFFVCAVLLMPESQFNREFGVFQVMYEI
        +LLL  AA+VS +AIR+W+EEPV  R  LNFDYT ARPRAL+G++      MKK +NLGIPVGHTF V  +LLMPESQFNR  GVFQ+  E+
Subjt:  VLLLVVAAAVSGLAIRYWMEEPVVLREKLNFDYTQARPRALFGME----NGMKKRRNLGIPVGHTFFVCAVLLMPESQFNREFGVFQVMYEI

XP_038901873.1 seipin-1 isoform X1 [Benincasa hispida]

4.7e-71

80.21

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Query:  MDSDNELEEPNRQIQKPSDFFNKIVFLQADLIYNAITFLIAPASTLLSLITESFHRVEETKCTVESAVRKSPSAMALQVRVAVRRLSYGVVAAALMCMVM
        MDSDNELEEP  QIQKPSDFFNKIVFLQADLIYNA  FLI+PASTLLSLI+ESF   EE K TVESAVRK PSA+A +VRVAVRRLSYGVVA A MCMVM
Subjt:  MDSDNELEEPNRQIQKPSDFFNKIVFLQADLIYNAITFLIAPASTLLSLITESFHRVEETKCTVESAVRKSPSAMALQVRVAVRRLSYGVVAAALMCMVM

Query:  VLLLVVAAAVSGLAIRYWMEEPVVLREKLNFDYTQARPRALFGMENG----MKKRRNLGIPVGHTFFVCAVLLMPESQFNREFGVFQVMYEI
        VLLLVVAAAVSGLAIR+W+EEPV LREKLNFDYT   PRALFGMENG    MKK+ NLGIPVGH+FFV  VLLMPES FNRE GVFQ+  E+
Subjt:  VLLLVVAAAVSGLAIRYWMEEPVVLREKLNFDYTQARPRALFGMENG----MKKRRNLGIPVGHTFFVCAVLLMPESQFNREFGVFQVMYEI

XP_038901874.1 seipin-1 isoform X2 [Benincasa hispida]

4.7e-71

80.21

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Query:  MDSDNELEEPNRQIQKPSDFFNKIVFLQADLIYNAITFLIAPASTLLSLITESFHRVEETKCTVESAVRKSPSAMALQVRVAVRRLSYGVVAAALMCMVM
        MDSDNELEEP  QIQKPSDFFNKIVFLQADLIYNA  FLI+PASTLLSLI+ESF   EE K TVESAVRK PSA+A +VRVAVRRLSYGVVA A MCMVM
Subjt:  MDSDNELEEPNRQIQKPSDFFNKIVFLQADLIYNAITFLIAPASTLLSLITESFHRVEETKCTVESAVRKSPSAMALQVRVAVRRLSYGVVAAALMCMVM

Query:  VLLLVVAAAVSGLAIRYWMEEPVVLREKLNFDYTQARPRALFGMENG----MKKRRNLGIPVGHTFFVCAVLLMPESQFNREFGVFQVMYEI
        VLLLVVAAAVSGLAIR+W+EEPV LREKLNFDYT   PRALFGMENG    MKK+ NLGIPVGH+FFV  VLLMPES FNRE GVFQ+  E+
Subjt:  VLLLVVAAAVSGLAIRYWMEEPVVLREKLNFDYTQARPRALFGMENG----MKKRRNLGIPVGHTFFVCAVLLMPESQFNREFGVFQVMYEI

TrEMBL top hits

e value

%identity

Alignment

A0A0A0M367 Uncharacterized protein

1.8e-68

76.17

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Query:  MDSDNELEEPNRQIQ--KPSDFFNKIVFLQADLIYNAITFLIAPASTLLSLITESFHRVEETKCTVESAVRKSPSAMALQVRVAVRRLSYGVVAAALMCM
        MDSD ELEEPNRQIQ  KP+DFFNK+VFLQADLIYNA+ F+IAPA TLLSL  ESF R EETK TVESAVRKSPS +A +V+VA RR+SYG VAA +MCM
Subjt:  MDSDNELEEPNRQIQ--KPSDFFNKIVFLQADLIYNAITFLIAPASTLLSLITESFHRVEETKCTVESAVRKSPSAMALQVRVAVRRLSYGVVAAALMCM

Query:  VMVLLLVVAAAVSGLAIRYWMEEPVVLREKLNFDYTQARPRALFGMENG--MK-KRRNLGIPVGHTFFVCAVLLMPESQFNREFGVFQVMYEI
        VMVLLLVVA  VSGL IRYW+EEPV ++EKL FDYT+ARPRALFG  NG  MK K++NLGIPVGHTF+VC VLLMPESQFNREFGVFQ+  E+
Subjt:  VMVLLLVVAAAVSGLAIRYWMEEPVVLREKLNFDYTQARPRALFGMENG--MK-KRRNLGIPVGHTFFVCAVLLMPESQFNREFGVFQVMYEI

A0A1S3B8L6 seipin-1

1.1e-70

76.41

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Query:  MDSDNELEEPNR----QIQKPSDFFNKIVFLQADLIYNAITFLIAPASTLLSLITESFHRVEETKCTVESAVRKSPSAMALQVRVAVRRLSYGVVAAALM
        MDSDN+L+EPNR    QIQKP+DFFNK+VFLQADLIYNA+ F+IAPASTLLSL  ESF R EETK TVESAVRKSPS +A +V+VAVRR+SYG VAA +M
Subjt:  MDSDNELEEPNR----QIQKPSDFFNKIVFLQADLIYNAITFLIAPASTLLSLITESFHRVEETKCTVESAVRKSPSAMALQVRVAVRRLSYGVVAAALM

Query:  CMVMVLLLVVAAAVSGLAIRYWMEEPVVLREKLNFDYTQARPRALFGMENG--MK-KRRNLGIPVGHTFFVCAVLLMPESQFNREFGVFQVMYEI
        CMVMVLLL+VA  VSGL IRYW+EEPV ++EKL FDYT+ARPRALFGM NG  MK K++NLGIPVGHTFFVC VLLMPESQFNREFGVFQ+  E+
Subjt:  CMVMVLLLVVAAAVSGLAIRYWMEEPVVLREKLNFDYTQARPRALFGMENG--MK-KRRNLGIPVGHTFFVCAVLLMPESQFNREFGVFQVMYEI

A0A5D3E501 Seipin-1

8.7e-55

75.46

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Query:  MDSDNELEEPNR--QIQKPSDFFNKIVFLQADLIYNAITFLIAPASTLLSLITESFHRVEETKCTVESAVRKSPSAMALQVRVAVRRLSYGVVAAALMCM
        MDSDN+L+EPNR  QIQKP+DFFNK+VFLQADLIYNA+ F+IAPASTLLSL  ESF R EETK TVESAVRKSPS +A +V+VAVRR+SYG VAA +MCM
Subjt:  MDSDNELEEPNR--QIQKPSDFFNKIVFLQADLIYNAITFLIAPASTLLSLITESFHRVEETKCTVESAVRKSPSAMALQVRVAVRRLSYGVVAAALMCM

Query:  VMVLLLVVAAAVSGLAIRYWMEEPVVLREKLNFDYTQARPRALFGMENG--MK-KRRNLGIPV
        VMVLLL+VA  VSGL IRYW+EEPV ++EKL FDYT+ARPRALFGM NG  MK K++NLGIP+
Subjt:  VMVLLLVVAAAVSGLAIRYWMEEPVVLREKLNFDYTQARPRALFGMENG--MK-KRRNLGIPV

A0A6J1F5S3 seipin-1

8.1e-61

70.31

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Query:  MDSDNELEEPNRQIQKPSDFFNKIVFLQADLIYNAITFLIAPASTLLSLITESFHRVEETKCTVESAVRKSPSAMALQVRVAVRRLSYGVVAAALMCMVM
        MD D+EL++  R I KPSD FNKIVFLQADLIY+AI FLIAP STLLSLI+ESF R EE K TVE AVRKSPSA+A +VR+AVRRLSYG+VAAA MCMVM
Subjt:  MDSDNELEEPNRQIQKPSDFFNKIVFLQADLIYNAITFLIAPASTLLSLITESFHRVEETKCTVESAVRKSPSAMALQVRVAVRRLSYGVVAAALMCMVM

Query:  VLLLVVAAAVSGLAIRYWMEEPVVLREKLNFDYTQARPRALFGME--NGM--KKRRNLGIPVGHTFFVCAVLLMPESQFNREFGVFQVMYEI
        +LLL  AA+VS +AIR+W+EEPV  R  LNFDYT ARPRAL+G++   GM  KK +NLGIPVGHTF V  +LLMPESQFNR  GVFQ+  E+
Subjt:  VLLLVVAAAVSGLAIRYWMEEPVVLREKLNFDYTQARPRALFGME--NGM--KKRRNLGIPVGHTFFVCAVLLMPESQFNREFGVFQVMYEI

A0A6J1KZV1 seipin-1

3.6e-61

69.79

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Query:  MDSDNELEEPNRQIQKPSDFFNKIVFLQADLIYNAITFLIAPASTLLSLITESFHRVEETKCTVESAVRKSPSAMALQVRVAVRRLSYGVVAAALMCMVM
        MD D+EL+E  R I KPSD FNKIVF+QAD+IY+AI FLIAP STLLSLI+ESFHR EE K TVE AVRKSPSA+A +VR+AVRRLSYG+VAAA MCMVM
Subjt:  MDSDNELEEPNRQIQKPSDFFNKIVFLQADLIYNAITFLIAPASTLLSLITESFHRVEETKCTVESAVRKSPSAMALQVRVAVRRLSYGVVAAALMCMVM

Query:  VLLLVVAAAVSGLAIRYWMEEPVVLREKLNFDYTQARPRALFGME--NGM--KKRRNLGIPVGHTFFVCAVLLMPESQFNREFGVFQVMYEI
         LLL  AA+VS +AIR+W+EEPV  +  LNFDYT ARPRAL+G++   GM  KK +NLGIPVGHTF V  +LLMPESQFNR  GVFQ+  E+
Subjt:  VLLLVVAAAVSGLAIRYWMEEPVVLREKLNFDYTQARPRALFGME--NGM--KKRRNLGIPVGHTFFVCAVLLMPESQFNREFGVFQVMYEI

SwissProt top hits

e value

%identity

Alignment

Q8L615 Seipin-3

1.7e-07

31.97

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Query:  VRRLSYGVVAAALMCMVMVLLLVVAAAVSGLAIRYWMEEPVVLREKLNFDYTQARPRA----------LFGME----------NGMKKRRNLGIPVGHTF
        VRR+++G+  A  + +++  LLV A  +SG  I Y   EP+V++E LNFDYT++ P A           FG+            G+K R  + +      
Subjt:  VRRLSYGVVAAALMCMVMVLLLVVAAAVSGLAIRYWMEEPVVLREKLNFDYTQARPRA----------LFGME----------NGMKKRRNLGIPVGHTF

Query:  FVCAVLLMPESQFNREFGVFQV
             + +PES++NR  G+FQV
Subjt:  FVCAVLLMPESQFNREFGVFQV

Q9FFD9 Seipin-1

6.9e-25

38.5

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Query:  DSDNELEEPNRQIQKPSDFFNKIVFLQADLIYNAITFLIAPASTLLSLITESFHRVEETKCTVESAVRKSPSAMALQVRVAVRRLSYGVVAAALMCMVMV
        + DN+L+ P       +D+F  +V +QADLIYNA+  L +P      L+  S+ R   T    E AV+++P+ +A      VRR  +G++ A  + MVMV
Subjt:  DSDNELEEPNRQIQKPSDFFNKIVFLQADLIYNAITFLIAPASTLLSLITESFHRVEETKCTVESAVRKSPSAMALQVRVAVRRLSYGVVAAALMCMVMV

Query:  LLLVVAAAVSGLAIRYWMEEPVVLREKLNFDYTQARPRALFGMENGMKKRRNLGIPVGHTFFVCAVLLMPESQFNREFGVFQVMYEI
        L L++A  +    +  ++E+PVV+R++L FDYT+  P A+F  +   KK+R+  +PVGH+  V  VL MPES+ NR  GVFQ+  E+
Subjt:  LLLVVAAAVSGLAIRYWMEEPVVLREKLNFDYTQARPRALFGMENGMKKRRNLGIPVGHTFFVCAVLLMPESQFNREFGVFQVMYEI

Arabidopsis top hits

e value

%identity

Alignment

AT2G34380.1 Putative adipose-regulatory protein (Seipin)

1.2e-08

31.97

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Query:  VRRLSYGVVAAALMCMVMVLLLVVAAAVSGLAIRYWMEEPVVLREKLNFDYTQARPRA----------LFGME----------NGMKKRRNLGIPVGHTF
        VRR+++G+  A  + +++  LLV A  +SG  I Y   EP+V++E LNFDYT++ P A           FG+            G+K R  + +      
Subjt:  VRRLSYGVVAAALMCMVMVLLLVVAAAVSGLAIRYWMEEPVVLREKLNFDYTQARPRA----------LFGME----------NGMKKRRNLGIPVGHTF

Query:  FVCAVLLMPESQFNREFGVFQV
             + +PES++NR  G+FQV
Subjt:  FVCAVLLMPESQFNREFGVFQV

AT5G16460.1 Putative adipose-regulatory protein (Seipin)

4.9e-26

38.5

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Query:  DSDNELEEPNRQIQKPSDFFNKIVFLQADLIYNAITFLIAPASTLLSLITESFHRVEETKCTVESAVRKSPSAMALQVRVAVRRLSYGVVAAALMCMVMV
        + DN+L+ P       +D+F  +V +QADLIYNA+  L +P      L+  S+ R   T    E AV+++P+ +A      VRR  +G++ A  + MVMV
Subjt:  DSDNELEEPNRQIQKPSDFFNKIVFLQADLIYNAITFLIAPASTLLSLITESFHRVEETKCTVESAVRKSPSAMALQVRVAVRRLSYGVVAAALMCMVMV

Query:  LLLVVAAAVSGLAIRYWMEEPVVLREKLNFDYTQARPRALFGMENGMKKRRNLGIPVGHTFFVCAVLLMPESQFNREFGVFQVMYEI
        L L++A  +    +  ++E+PVV+R++L FDYT+  P A+F  +   KK+R+  +PVGH+  V  VL MPES+ NR  GVFQ+  E+
Subjt:  LLLVVAAAVSGLAIRYWMEEPVVLREKLNFDYTQARPRALFGMENGMKKRRNLGIPVGHTFFVCAVLLMPESQFNREFGVFQVMYEI

Sequences

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CDS sequence

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ATGGATTCCGACAACGAACTAGAAGAACCCAACCGCCAAATCCAAAAACCCTCCGATTTCTTCAACAAAATCGTATTCCTCCAAGCCGATTTGATCTACAACGCTATCAC
CTTTCTAATCGCTCCAGCCTCCACTCTCCTCTCCCTAATCACAGAGTCATTTCACCGAGTAGAAGAGACGAAATGCACCGTCGAGTCCGCCGTCCGAAAATCCCCCTCCG
CCATGGCGCTTCAGGTGAGAGTAGCGGTTAGAAGGCTGAGCTACGGGGTTGTGGCGGCGGCGTTGATGTGTATGGTGATGGTGTTGCTTCTAGTAGTTGCGGCGGCGGTG
AGTGGGTTGGCGATTAGGTATTGGATGGAAGAGCCGGTGGTGTTGAGGGAGAAATTGAACTTCGATTATACTCAGGCTCGACCTAGGGCTTTGTTTGGAATGGAAAATGG
GATGAAGAAGAGGAGGAATTTGGGGATTCCGGTAGGGCACACGTTTTTTGTGTGTGCGGTCCTTTTAATGCCTGAATCTCAATTCAATCGGGAGTTTGGGGTTTTTCAGG
TAATGTACGAAATTTATTATTATTATTATTATTTTGCCCCACTAAAAACTAGCTTTATTTATAAATAG

mRNA sequence

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Protein sequence

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MDSDNELEEPNRQIQKPSDFFNKIVFLQADLIYNAITFLIAPASTLLSLITESFHRVEETKCTVESAVRKSPSAMALQVRVAVRRLSYGVVAAALMCMVMVLLLVVAAAV
SGLAIRYWMEEPVVLREKLNFDYTQARPRALFGMENGMKKRRNLGIPVGHTFFVCAVLLMPESQFNREFGVFQVMYEIYYYYYYFAPLKTSFIYK

Lsi06G006950 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome