CuGenDBv2

Gene ID	Lsi06G007030
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Cytochrome c biogenesis factor N
Genome location	chr06:11219558..11219943
RNA-Seq Expression	Lsi06G007030
Synteny	Lsi06G007030
Gene Ontology terms	GO:0015886 - heme transport (biological process) GO:0017004 - cytochrome complex assembly (biological process) GO:0005739 - mitochondrion (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0015232 - heme transporter activity (molecular function) GO:0020037 - heme binding (molecular function)
InterPro domains	IPR003567 - Cytochrome c-type biogenesis protein IPR003569 - Probable cytochrome c biosynthesis protein, plants

Homology

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GenBank top hits

e value

%identity

Alignment

KAB5511261.1 hypothetical protein DKX38_030056 [Salix brachista]

3.1e-29

86.84

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Query:  FESFHLSCRSFCGYRMMGITKQKFGNEHEMSIYELFHYSLFSSLFVAFTYNKKQPPAFGAAPAFWCILLSLILWSF
        FES HLSC S CGYRMMGITKQKFGNEHEMSIYELFHYSLF   FVAFTYNKKQPPAFGAAPAFWCILLS +  SF
Subjt:  FESFHLSCRSFCGYRMMGITKQKFGNEHEMSIYELFHYSLFSSLFVAFTYNKKQPPAFGAAPAFWCILLSLILWSF

KAG2481714.1 hypothetical protein PVAP13_J020115 [Panicum virgatum]

9.6e-23

83.58

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Query:  SFCGYRMMGITKQKFGNEHEMSIYELFHYSLFSSLFVAFTYNKKQPPAFGAAPAFWCILLSLILWSF
        S CGYRMMGITKQKFGNEHEMSI E  HY LF  LFVAFTYNKKQPPAFGAAPAFWCILLS +  SF
Subjt:  SFCGYRMMGITKQKFGNEHEMSIYELFHYSLFSSLFVAFTYNKKQPPAFGAAPAFWCILLSLILWSF

KAG5595202.1 hypothetical protein H5410_036434 [Solanum commersonii]

1.9e-26

81.58

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Query:  FESFHLSCRSFCGYRMMGITKQKFGNEHEMSIYELFHYSLFSSLFVAFTYNKKQPPAFGAAPAFWCILLSLILWSF
        FES HLS    CGYRMMGITKQKFGNEHEMSIYELFHYSLF  LF+AFTYNKKQPP FGAA AFWCILLS +  SF
Subjt:  FESFHLSCRSFCGYRMMGITKQKFGNEHEMSIYELFHYSLFSSLFVAFTYNKKQPPAFGAAPAFWCILLSLILWSF

KAG6621673.1 hypothetical protein I3842_Q008900 [Carya illinoinensis]

2.3e-29

86.84

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Query:  FESFHLSCRSFCGYRMMGITKQKFGNEHEMSIYELFHYSLFSSLFVAFTYNKKQPPAFGAAPAFWCILLSLILWSF
        FES HLSC S CGYRMMGITKQKFGNE+EMSIYELFHYSLF  LFVAFTYNKKQPPAFGAAPAFWCILLS +  SF
Subjt:  FESFHLSCRSFCGYRMMGITKQKFGNEHEMSIYELFHYSLFSSLFVAFTYNKKQPPAFGAAPAFWCILLSLILWSF

KAG8362752.1 hypothetical protein BUALT_BualtUnG0038700 [Buddleja alternifolia]

5.2e-29

85.53

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Query:  FESFHLSCRSFCGYRMMGITKQKFGNEHEMSIYELFHYSLFSSLFVAFTYNKKQPPAFGAAPAFWCILLSLILWSF
        FES HLSC S CGYRMMGITK KFGNEHEMSIYELFHYSLF  LFVAFTYNKKQPP FGAAPAFWCILLS +  SF
Subjt:  FESFHLSCRSFCGYRMMGITKQKFGNEHEMSIYELFHYSLFSSLFVAFTYNKKQPPAFGAAPAFWCILLSLILWSF

TrEMBL top hits

e value

%identity

Alignment

A0A5N5IVX5 Cytochrom_C_asm domain-containing protein

1.5e-29

86.84

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Query:  FESFHLSCRSFCGYRMMGITKQKFGNEHEMSIYELFHYSLFSSLFVAFTYNKKQPPAFGAAPAFWCILLSLILWSF
        FES HLSC S CGYRMMGITKQKFGNEHEMSIYELFHYSLF   FVAFTYNKKQPPAFGAAPAFWCILLS +  SF
Subjt:  FESFHLSCRSFCGYRMMGITKQKFGNEHEMSIYELFHYSLFSSLFVAFTYNKKQPPAFGAAPAFWCILLSLILWSF

A0A6N2K5R7 Cytochrom_C_asm domain-containing protein

1.5e-29

86.84

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Query:  FESFHLSCRSFCGYRMMGITKQKFGNEHEMSIYELFHYSLFSSLFVAFTYNKKQPPAFGAAPAFWCILLSLILWSF
        FES HLSC S CGYRMMGITKQKFGNEHEMSIYELFHYSLF   FVAFTYNKKQPPAFGAAPAFWCILLS +  SF
Subjt:  FESFHLSCRSFCGYRMMGITKQKFGNEHEMSIYELFHYSLFSSLFVAFTYNKKQPPAFGAAPAFWCILLSLILWSF

A0A6N2KI65 Cytochrom_C_asm domain-containing protein

1.5e-29

86.84

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Query:  FESFHLSCRSFCGYRMMGITKQKFGNEHEMSIYELFHYSLFSSLFVAFTYNKKQPPAFGAAPAFWCILLSLILWSF
        FES HLSC S CGYRMMGITKQKFGNEHEMSIYELFHYSLF   FVAFTYNKKQPPAFGAAPAFWCILLS +  SF
Subjt:  FESFHLSCRSFCGYRMMGITKQKFGNEHEMSIYELFHYSLFSSLFVAFTYNKKQPPAFGAAPAFWCILLSLILWSF

A0A6N2KX72 Cytochrom_C_asm domain-containing protein (Fragment)

1.5e-29

86.84

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Query:  FESFHLSCRSFCGYRMMGITKQKFGNEHEMSIYELFHYSLFSSLFVAFTYNKKQPPAFGAAPAFWCILLSLILWSF
        FES HLSC S CGYRMMGITKQKFGNEHEMSIYELFHYSLF   FVAFTYNKKQPPAFGAAPAFWCILLS +  SF
Subjt:  FESFHLSCRSFCGYRMMGITKQKFGNEHEMSIYELFHYSLFSSLFVAFTYNKKQPPAFGAAPAFWCILLSLILWSF

A0A6N2LC75 Cytochrom_C_asm domain-containing protein (Fragment)

1.5e-29

86.84

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Query:  FESFHLSCRSFCGYRMMGITKQKFGNEHEMSIYELFHYSLFSSLFVAFTYNKKQPPAFGAAPAFWCILLSLILWSF
        FES HLSC S CGYRMMGITKQKFGNEHEMSIYELFHYSLF   FVAFTYNKKQPPAFGAAPAFWCILLS +  SF
Subjt:  FESFHLSCRSFCGYRMMGITKQKFGNEHEMSIYELFHYSLFSSLFVAFTYNKKQPPAFGAAPAFWCILLSLILWSF

SwissProt top hits

e value

%identity

Alignment

Q04647 Probable cytochrome c biosynthesis protein

9.9e-15

82.98

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Query:  MSIYELFHYSLFSSLFVAFTYNKKQPPAFGAAPAFWCILLSLILWSF
        MSIYELFHYSLF  LFVAFTYNKKQPP FGAA AFWCILLS +  SF
Subjt:  MSIYELFHYSLFSSLFVAFTYNKKQPPAFGAAPAFWCILLSLILWSF

Q04648 Probable cytochrome c biosynthesis protein

1.1e-13

83.72

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Query:  MSIYELFHYSLFSSLFVAFTYNKKQPPAFGAAPAFWCILLSLI
        MSI ELFHYSLF  LFVAFTYNKK+PPAFGAA AFWCILLS +
Subjt:  MSIYELFHYSLFSSLFVAFTYNKKQPPAFGAAPAFWCILLSLI

Q9T6H8 Cytochrome c biogenesis CcmF N-terminal-like mitochondrial protein 1

4.9e-14

83.72

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Query:  MSIYELFHYSLFSSLFVAFTYNKKQPPAFGAAPAFWCILLSLI
        +SIYE FHYSLF  LFVAFTYNKKQPPAFGAA AFWCILLS +
Subjt:  MSIYELFHYSLFSSLFVAFTYNKKQPPAFGAAPAFWCILLSLI

Arabidopsis top hits

e value

%identity

Alignment

ATMG00830.1 cytochrome C biogenesis 382

1.1e-16

82.98

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Query:  MSIYELFHYSLFSSLFVAFTYNKKQPPAFGAAPAFWCILLSLILWSF
        +SIYE FHYSLF  LFVAFTYNKKQPPAFGAAPAFWCILLS +  SF
Subjt:  MSIYELFHYSLFSSLFVAFTYNKKQPPAFGAAPAFWCILLSLILWSF

Sequences

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CDS sequence

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ATGATGTTCGAATCCTTCCACCTTTCTTGTAGATCATTCTGTGGTTACCGGATGATGGGAATAACAAAGCAAAAATTTGGAAATGAGCACGAAATGTCAATATATGAATT
GTTTCATTATTCGTTATTTTCCAGTCTTTTTGTTGCATTCACCTATAACAAGAAACAACCACCAGCGTTTGGTGCAGCACCTGCATTTTGGTGTATTCTTCTTTCTTTAA
TTCTTTGGTCTTTCGTTCCGTCATATTTCTAA

mRNA sequence

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Protein sequence

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MMFESFHLSCRSFCGYRMMGITKQKFGNEHEMSIYELFHYSLFSSLFVAFTYNKKQPPAFGAAPAFWCILLSLILWSFVPSYF

Lsi06G007030 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome