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Lsi06G007320 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi06G007320
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionGlial fibrillary acidic protein-like
Genome locationchr06:12525987..12539889
RNA-Seq ExpressionLsi06G007320
SyntenyLsi06G007320
Gene Ontology termsGO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0005634 - nucleus (cellular component)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033221.1 uncharacterized protein E6C27_scaffold845G00100 [Cucumis melo var. makuwa]1.1e-3365.81Show/hide
Query:  ECRNTFLQEAVASFEGQLLIYRKAREVATDDYTRLKEEYQEMSTDFAVWRDEYDIVRHKYDDARNQIEQGAKKLRQMAKMADQFSAQAMTLQQGIIPTQH
        E +N FLQ+AV S E QLLI RKAREV TDDY +L E+YQEMS DF +W+DEY+ +R KYDDA  ++E+GA+KLRQMA++ADQFS QA TL+QG+IPT+ 
Subjt:  ECRNTFLQEAVASFEGQLLIYRKAREVATDDYTRLKEEYQEMSTDFAVWRDEYDIVRHKYDDARNQIEQGAKKLRQMAKMADQFSAQAMTLQQGIIPTQH

Query:  NSKELSRFLGVIGQYLG
          KELS FLG+IGQ LG
Subjt:  NSKELSRFLGVIGQYLG

KAA0033221.1 uncharacterized protein E6C27_scaffold845G00100 [Cucumis melo var. makuwa]1.5e-1468.12Show/hide
Query:  RFLGVIGQYLGHIITIGEGIEFGVKNGRITDFASESRKMMTPKKKEGEVHELSSAQRVAAHVSSPTAGQ
        R +G        +ITIGE IEFGVKNGRI+D ASE+R++MTPKKKEGEVHELSS QRVA  VSSP  GQ
Subjt:  RFLGVIGQYLGHIITIGEGIEFGVKNGRITDFASESRKMMTPKKKEGEVHELSSAQRVAAHVSSPTAGQ

KAA0033221.1 uncharacterized protein E6C27_scaffold845G00100 [Cucumis melo var. makuwa]4.8e-0565.79Show/hide
Query:  GMTRSGRCYTPDNLRNIPKEDEARQHKGKAMEITSGDD
        G+TRSGRCYTPDNL+++ KEDE R+ KGKA+E+   DD
Subjt:  GMTRSGRCYTPDNLRNIPKEDEARQHKGKAMEITSGDD

KAA0033221.1 uncharacterized protein E6C27_scaffold845G00100 [Cucumis melo var. makuwa]3.2e-3364.96Show/hide
Query:  ECRNTFLQEAVASFEGQLLIYRKAREVATDDYTRLKEEYQEMSTDFAVWRDEYDIVRHKYDDARNQIEQGAKKLRQMAKMADQFSAQAMTLQQGIIPTQH
        E +N FLQ+AV S E QLLI RKAR+V TDDY +L E+YQEMS DF +W+DEY+ +R KYDDA  ++E+GA+KLRQMA++ADQFS QA TL+QG+IPT+ 
Subjt:  ECRNTFLQEAVASFEGQLLIYRKAREVATDDYTRLKEEYQEMSTDFAVWRDEYDIVRHKYDDARNQIEQGAKKLRQMAKMADQFSAQAMTLQQGIIPTQH

Query:  NSKELSRFLGVIGQYLG
          KELS FLG+IGQ LG
Subjt:  NSKELSRFLGVIGQYLG

KAA0033848.1 glial fibrillary acidic protein-like [Cucumis melo var. makuwa]5.8e-3564.41Show/hide
Query:  EECRNTFLQEAVASFEGQLLIYRKAREVATDDYTRLKEEYQEMSTDFAVWRDEYDIVRHKYDDARNQIEQGAKKLRQMAKMADQFSAQAMTLQQGIIPTQ
        E+C+N  LQEAVAS E QLLI R AREV T+D+ RLK E++E+  DFA+WRDEY+I+RHKY+D + QIEQG KKLR MA+ ADQFS + + LQQ I+P Q
Subjt:  EECRNTFLQEAVASFEGQLLIYRKAREVATDDYTRLKEEYQEMSTDFAVWRDEYDIVRHKYDDARNQIEQGAKKLRQMAKMADQFSAQAMTLQQGIIPTQ

Query:  HNSKELSRFLGVIGQYLG
          S+ELSRFLG+IG YLG
Subjt:  HNSKELSRFLGVIGQYLG

KAA0034829.1 glial fibrillary acidic protein-like [Cucumis melo var. makuwa]4.4e-3563.2Show/hide
Query:  ECRNTFLQEAVASFEGQLLIYRKAREVATDDYTRLKEEYQEMSTDFAVWRDEYDIVRHKYDDARNQIEQGAKKLRQMAKMADQFSAQAMTLQQGIIPTQH
        E +N FLQ+AV S E QLLI RKA+EV TDDY +L E+YQEMS DF +W+DEY+ +R KYDDA  ++E+GA+KLRQMA MADQFS QA TL+QG+IPT+ 
Subjt:  ECRNTFLQEAVASFEGQLLIYRKAREVATDDYTRLKEEYQEMSTDFAVWRDEYDIVRHKYDDARNQIEQGAKKLRQMAKMADQFSAQAMTLQQGIIPTQH

Query:  NSKELSRFLGVIGQYLGHIITIGEG
         ++ELS FLG+IGQYL  ++T G G
Subjt:  NSKELSRFLGVIGQYLGHIITIGEG

KAA0051514.1 glial fibrillary acidic protein-like [Cucumis melo var. makuwa]3.2e-4143.92Show/hide
Query:  ECRNTFLQEAVASFEGQLLIYRKAREVATDDYTRLKEEYQEMSTDFAVWRDEYDIVRHKYDDARNQIEQGAKKLRQMAKMADQFSAQAMTLQQGIIPTQH
        E +N FLQEAV S EGQLLI  KAR+VAT+DY +L E YQEMS DF +WR+EY+ +R KYD AR Q+EQG +KLRQMA+M DQF  QA TLQ+G+IP + 
Subjt:  ECRNTFLQEAVASFEGQLLIYRKAREVATDDYTRLKEEYQEMSTDFAVWRDEYDIVRHKYDDARNQIEQGAKKLRQMAKMADQFSAQAMTLQQGIIPTQH

Query:  NSKELSRFLGVIGQ--------------------------------------------------------------------------------YLGHII
         +KELS FLG+IG+                                                                                   ++I
Subjt:  NSKELSRFLGVIGQ--------------------------------------------------------------------------------YLGHII

Query:  TIGEGIEFGVKNGRITDFASESRKMMTPKKKEGEVHELSSAQRVAAHVSSPTAGQ
        TI E IEFGVKNGRI D  S++R+MMTP KK+ EVHELSS QRV   VSSPT  Q
Subjt:  TIGEGIEFGVKNGRITDFASESRKMMTPKKKEGEVHELSSAQRVAAHVSSPTAGQ

TrEMBL top hitse value%identityAlignment
A0A5A7SUT0 Reverse transcriptase5.3e-3465.81Show/hide
Query:  ECRNTFLQEAVASFEGQLLIYRKAREVATDDYTRLKEEYQEMSTDFAVWRDEYDIVRHKYDDARNQIEQGAKKLRQMAKMADQFSAQAMTLQQGIIPTQH
        E +N FLQ+AV S E QLLI RKAREV TDDY +L E+YQEMS DF +W+DEY+ +R KYDDA  ++E+GA+KLRQMA++ADQFS QA TL+QG+IPT+ 
Subjt:  ECRNTFLQEAVASFEGQLLIYRKAREVATDDYTRLKEEYQEMSTDFAVWRDEYDIVRHKYDDARNQIEQGAKKLRQMAKMADQFSAQAMTLQQGIIPTQH

Query:  NSKELSRFLGVIGQYLG
          KELS FLG+IGQ LG
Subjt:  NSKELSRFLGVIGQYLG

A0A5A7SUT0 Reverse transcriptase7.2e-1568.12Show/hide
Query:  RFLGVIGQYLGHIITIGEGIEFGVKNGRITDFASESRKMMTPKKKEGEVHELSSAQRVAAHVSSPTAGQ
        R +G        +ITIGE IEFGVKNGRI+D ASE+R++MTPKKKEGEVHELSS QRVA  VSSP  GQ
Subjt:  RFLGVIGQYLGHIITIGEGIEFGVKNGRITDFASESRKMMTPKKKEGEVHELSSAQRVAAHVSSPTAGQ

A0A5A7SUT0 Reverse transcriptase2.3e-0565.79Show/hide
Query:  GMTRSGRCYTPDNLRNIPKEDEARQHKGKAMEITSGDD
        G+TRSGRCYTPDNL+++ KEDE R+ KGKA+E+   DD
Subjt:  GMTRSGRCYTPDNLRNIPKEDEARQHKGKAMEITSGDD

A0A5A7SUT0 Reverse transcriptase1.5e-3364.96Show/hide
Query:  ECRNTFLQEAVASFEGQLLIYRKAREVATDDYTRLKEEYQEMSTDFAVWRDEYDIVRHKYDDARNQIEQGAKKLRQMAKMADQFSAQAMTLQQGIIPTQH
        E +N FLQ+AV S E QLLI RKAR+V TDDY +L E+YQEMS DF +W+DEY+ +R KYDDA  ++E+GA+KLRQMA++ADQFS QA TL+QG+IPT+ 
Subjt:  ECRNTFLQEAVASFEGQLLIYRKAREVATDDYTRLKEEYQEMSTDFAVWRDEYDIVRHKYDDARNQIEQGAKKLRQMAKMADQFSAQAMTLQQGIIPTQH

Query:  NSKELSRFLGVIGQYLG
          KELS FLG+IGQ LG
Subjt:  NSKELSRFLGVIGQYLG

A0A5A7T0F3 Glial fibrillary acidic protein-like2.2e-3563.2Show/hide
Query:  ECRNTFLQEAVASFEGQLLIYRKAREVATDDYTRLKEEYQEMSTDFAVWRDEYDIVRHKYDDARNQIEQGAKKLRQMAKMADQFSAQAMTLQQGIIPTQH
        E +N FLQ+AV S E QLLI RKA+EV TDDY +L E+YQEMS DF +W+DEY+ +R KYDDA  ++E+GA+KLRQMA MADQFS QA TL+QG+IPT+ 
Subjt:  ECRNTFLQEAVASFEGQLLIYRKAREVATDDYTRLKEEYQEMSTDFAVWRDEYDIVRHKYDDARNQIEQGAKKLRQMAKMADQFSAQAMTLQQGIIPTQH

Query:  NSKELSRFLGVIGQYLGHIITIGEG
         ++ELS FLG+IGQYL  ++T G G
Subjt:  NSKELSRFLGVIGQYLGHIITIGEG

A0A5A7U875 Glial fibrillary acidic protein-like1.5e-4143.92Show/hide
Query:  ECRNTFLQEAVASFEGQLLIYRKAREVATDDYTRLKEEYQEMSTDFAVWRDEYDIVRHKYDDARNQIEQGAKKLRQMAKMADQFSAQAMTLQQGIIPTQH
        E +N FLQEAV S EGQLLI  KAR+VAT+DY +L E YQEMS DF +WR+EY+ +R KYD AR Q+EQG +KLRQMA+M DQF  QA TLQ+G+IP + 
Subjt:  ECRNTFLQEAVASFEGQLLIYRKAREVATDDYTRLKEEYQEMSTDFAVWRDEYDIVRHKYDDARNQIEQGAKKLRQMAKMADQFSAQAMTLQQGIIPTQH

Query:  NSKELSRFLGVIGQ--------------------------------------------------------------------------------YLGHII
         +KELS FLG+IG+                                                                                   ++I
Subjt:  NSKELSRFLGVIGQ--------------------------------------------------------------------------------YLGHII

Query:  TIGEGIEFGVKNGRITDFASESRKMMTPKKKEGEVHELSSAQRVAAHVSSPTAGQ
        TI E IEFGVKNGRI D  S++R+MMTP KK+ EVHELSS QRV   VSSPT  Q
Subjt:  TIGEGIEFGVKNGRITDFASESRKMMTPKKKEGEVHELSSAQRVAAHVSSPTAGQ

A0A5D3BQ93 Glial fibrillary acidic protein-like2.8e-3564.41Show/hide
Query:  EECRNTFLQEAVASFEGQLLIYRKAREVATDDYTRLKEEYQEMSTDFAVWRDEYDIVRHKYDDARNQIEQGAKKLRQMAKMADQFSAQAMTLQQGIIPTQ
        E+C+N  LQEAVAS E QLLI R AREV T+D+ RLK E++E+  DFA+WRDEY+I+RHKY+D + QIEQG KKLR MA+ ADQFS + + LQQ I+P Q
Subjt:  EECRNTFLQEAVASFEGQLLIYRKAREVATDDYTRLKEEYQEMSTDFAVWRDEYDIVRHKYDDARNQIEQGAKKLRQMAKMADQFSAQAMTLQQGIIPTQ

Query:  HNSKELSRFLGVIGQYLG
          S+ELSRFLG+IG YLG
Subjt:  HNSKELSRFLGVIGQYLG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGATGGTAGACACTCATGCACCTGGGGTATTTGCCCAAACCGTACCTAGTGAAGACTCGTGGGAAGAATGTCGCAATACATTTCTCCAGGAGGCTGTTGCAAGTTT
TGAAGGCCAGTTGCTGATATATCGTAAGGCGCGAGAGGTCGCAACAGATGACTATACTCGGTTAAAGGAAGAGTATCAAGAAATGTCAACAGATTTTGCAGTATGGAGAG
ACGAATATGACATAGTGAGACACAAATATGATGACGCTAGAAATCAGATTGAACAAGGAGCTAAGAAATTAAGACAGATGGCGAAAATGGCAGATCAATTCTCAGCACAA
GCAATGACTCTCCAGCAAGGCATCATACCTACACAGCACAACAGCAAAGAGTTGTCTCGTTTCCTAGGGGTTATAGGGCAATACCTCGGGCACATCATAACCATTGGAGA
AGGAATCGAATTCGGAGTAAAGAATGGAAGGATTACTGATTTTGCTTCAGAGTCAAGAAAAATGATGACCCCAAAGAAAAAGGAGGGAGAAGTGCACGAGTTGAGCTCGG
CTCAAAGAGTAGCTGCACATGTGTCTTCACCAACTGCTGGGCAAGCAATTACTCTCCTAATCATCAGAATTGTCACCTCTTGTATCGAGATACCAAAGATAATAATCGTC
GAGATACCAGGTCCCTTTGCTTATAAGGATAATCGAGCTGTACCATGGAAATATGAATGTCAGTTCATCACAAATAATGTTTCTAGAGGGATGACTCGTAGTGGAAGATG
TTACACACCAGATAACTTAAGGAATATTCCGAAAGAGGATGAAGCTCGACAACACAAGGGTAAAGCTATGGAAATAACAAGTGGGGATGATTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGGATGGTAGACACTCATGCACCTGGGGTATTTGCCCAAACCGTACCTAGTGAAGACTCGTGGGAAGAATGTCGCAATACATTTCTCCAGGAGGCTGTTGCAAGTTT
TGAAGGCCAGTTGCTGATATATCGTAAGGCGCGAGAGGTCGCAACAGATGACTATACTCGGTTAAAGGAAGAGTATCAAGAAATGTCAACAGATTTTGCAGTATGGAGAG
ACGAATATGACATAGTGAGACACAAATATGATGACGCTAGAAATCAGATTGAACAAGGAGCTAAGAAATTAAGACAGATGGCGAAAATGGCAGATCAATTCTCAGCACAA
GCAATGACTCTCCAGCAAGGCATCATACCTACACAGCACAACAGCAAAGAGTTGTCTCGTTTCCTAGGGGTTATAGGGCAATACCTCGGGCACATCATAACCATTGGAGA
AGGAATCGAATTCGGAGTAAAGAATGGAAGGATTACTGATTTTGCTTCAGAGTCAAGAAAAATGATGACCCCAAAGAAAAAGGAGGGAGAAGTGCACGAGTTGAGCTCGG
CTCAAAGAGTAGCTGCACATGTGTCTTCACCAACTGCTGGGCAAGCAATTACTCTCCTAATCATCAGAATTGTCACCTCTTGTATCGAGATACCAAAGATAATAATCGTC
GAGATACCAGGTCCCTTTGCTTATAAGGATAATCGAGCTGTACCATGGAAATATGAATGTCAGTTCATCACAAATAATGTTTCTAGAGGGATGACTCGTAGTGGAAGATG
TTACACACCAGATAACTTAAGGAATATTCCGAAAGAGGATGAAGCTCGACAACACAAGGGTAAAGCTATGGAAATAACAAGTGGGGATGATTAG
Protein sequenceShow/hide protein sequence
MRMVDTHAPGVFAQTVPSEDSWEECRNTFLQEAVASFEGQLLIYRKAREVATDDYTRLKEEYQEMSTDFAVWRDEYDIVRHKYDDARNQIEQGAKKLRQMAKMADQFSAQ
AMTLQQGIIPTQHNSKELSRFLGVIGQYLGHIITIGEGIEFGVKNGRITDFASESRKMMTPKKKEGEVHELSSAQRVAAHVSSPTAGQAITLLIIRIVTSCIEIPKIIIV
EIPGPFAYKDNRAVPWKYECQFITNNVSRGMTRSGRCYTPDNLRNIPKEDEARQHKGKAMEITSGDD