; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi06G007430 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi06G007430
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionmultiple organellar RNA editing factor 3, mitochondrial
Genome locationchr06:13440671..13441081
RNA-Seq ExpressionLsi06G007430
SyntenyLsi06G007430
Gene Ontology termsGO:0006397 - mRNA processing (biological process)
GO:0016554 - cytidine to uridine editing (biological process)
GO:0080156 - mitochondrial mRNA modification (biological process)
GO:0005739 - mitochondrion (cellular component)
InterPro domainsIPR039206 - MORF/ORRM1/DAG-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575083.1 Multiple organellar RNA editing factor 3, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]2.0e-2770.65Show/hide
Query:  SSSSSFLLPSFISSRL--------QDYQIIPNSFNLPIRFKALGFEYSPLNDASPNWSNRPPKETTLLNGCDYEHWLIVMEFPNDPKTIGEE
        SSSSSF LPS ISSRL        +  +IIPNSFN P+RF+  G  YSPLND SPNWSNRPPKET LL+GCDYEHWLIVMEFPNDPK   EE
Subjt:  SSSSSFLLPSFISSRL--------QDYQIIPNSFNLPIRFKALGFEYSPLNDASPNWSNRPPKETTLLNGCDYEHWLIVMEFPNDPKTIGEE

KAG7013654.1 Multiple organellar RNA editing factor 3, mitochondrial [Cucurbita argyrosperma subsp. argyrosperma]1.8e-2862.96Show/hide
Query:  LTSSTTFLECLQHVIDSSSSSFLLPSFISSRL--------QDYQIIPNSFNLPIRFKALGFEYSPLNDASPNWSNRPPKETTLLNGCDYEHWLIVMEFPN
        + +  TF   L     SSSSSF LPS ISSRL        +  +IIPNSFN P+RF+  G  YSPLND SPNWSNRPPKET LL+GCDYEHWLIVMEFPN
Subjt:  LTSSTTFLECLQHVIDSSSSSFLLPSFISSRL--------QDYQIIPNSFNLPIRFKALGFEYSPLNDASPNWSNRPPKETTLLNGCDYEHWLIVMEFPN

Query:  DPKTIGEE
        DPK   EE
Subjt:  DPKTIGEE

XP_022959433.1 multiple organellar RNA editing factor 3, mitochondrial [Cucurbita moschata]2.0e-2770.65Show/hide
Query:  SSSSSFLLPSFISSRL--------QDYQIIPNSFNLPIRFKALGFEYSPLNDASPNWSNRPPKETTLLNGCDYEHWLIVMEFPNDPKTIGEE
        SSSSSF LPS ISSRL        +  +IIPNSFN P+RF+  G  YSPLND SPNWSNRPPKET LL+GCDYEHWLIVMEFPNDPK   EE
Subjt:  SSSSSFLLPSFISSRL--------QDYQIIPNSFNLPIRFKALGFEYSPLNDASPNWSNRPPKETTLLNGCDYEHWLIVMEFPNDPKTIGEE

XP_023548315.1 multiple organellar RNA editing factor 3, mitochondrial [Cucurbita pepo subsp. pepo]5.2e-2857.94Show/hide
Query:  STYNTSIDHQNLCPLSLLTSSTTFLECLQHVI-DSSSSSFLLPSFISSRL--------QDYQIIPNSFNLPIRFKALGFEYSPLNDASPNWSNRPPKETT
        ST N    +     LS + +  TF   L      SSSSSF LPS ISSRL        +  +IIPNSFN P+RF+  G  YSPLND SPNWSNRPPKET 
Subjt:  STYNTSIDHQNLCPLSLLTSSTTFLECLQHVI-DSSSSSFLLPSFISSRL--------QDYQIIPNSFNLPIRFKALGFEYSPLNDASPNWSNRPPKETT

Query:  LLNGCDYEHWLIVMEFPNDPKTIGEE
        LL+GCDYEHWLIVMEFPNDPK   EE
Subjt:  LLNGCDYEHWLIVMEFPNDPKTIGEE

XP_038906658.1 multiple organellar RNA editing factor 3, mitochondrial [Benincasa hispida]8.8e-2873.63Show/hide
Query:  SSSSFLLPSFISSRLQDY--------QIIPNSFNLPIRFKALGFEYSPLNDASPNWSNRPPKETTLLNGCDYEHWLIVMEFPNDPKTIGEE
        SSSSF LPS ISSRL+          QIIPNSFNLPIRFK+ G  YSPLND SPNWSNRPPKET LL+GCDYEHWLIVMEFP DPK   EE
Subjt:  SSSSFLLPSFISSRLQDY--------QIIPNSFNLPIRFKALGFEYSPLNDASPNWSNRPPKETTLLNGCDYEHWLIVMEFPNDPKTIGEE

TrEMBL top hitse value%identityAlignment
A0A0A0KCH1 Uncharacterized protein2.8e-2774.19Show/hide
Query:  SSSSSFLLPS-FISSRL--------QDYQIIPNSFNLPIRFKALGFEYSPLNDASPNWSNRPPKETTLLNGCDYEHWLIVMEFPNDPKTIGEE
        SSSSSFLLPS  ISSRL        +  QIIP SFNLPIRFKA G  YSPLND SPNWSNRPPKET LL+GCDYEHWLIV+EFPNDPK   EE
Subjt:  SSSSSFLLPS-FISSRL--------QDYQIIPNSFNLPIRFKALGFEYSPLNDASPNWSNRPPKETTLLNGCDYEHWLIVMEFPNDPKTIGEE

A0A1S3C8E0 multiple organellar RNA editing factor 3, mitochondrial-like6.8e-2672.83Show/hide
Query:  SSSSSFLLPSFISSRL--------QDYQIIPNSFNLPIRFKALGFEYSPLNDASPNWSNRPPKETTLLNGCDYEHWLIVMEFPNDPKTIGEE
        SSSSSFLL S ISSRL        +  QIIP SFNLPIRFKA G  YSPLND SPNWSNRPPKET LL+GCDYEHWLIV+EFP DPK   EE
Subjt:  SSSSSFLLPSFISSRL--------QDYQIIPNSFNLPIRFKALGFEYSPLNDASPNWSNRPPKETTLLNGCDYEHWLIVMEFPNDPKTIGEE

A0A6J1C9B1 multiple organellar RNA editing factor 3, mitochondrial-like4.4e-2567.39Show/hide
Query:  SSSSSFLLPSFISSRLQDY--------QIIPNSFNLPIRFKALGFEYSPLNDASPNWSNRPPKETTLLNGCDYEHWLIVMEFPNDPKTIGEE
        S SSSF   S +SSRL+          QI PN+FNLPIRFK  G  YSPLND SPNWSNRPPKET LL+GCDYEHWLIV+EFPNDPK   EE
Subjt:  SSSSSFLLPSFISSRLQDY--------QIIPNSFNLPIRFKALGFEYSPLNDASPNWSNRPPKETTLLNGCDYEHWLIVMEFPNDPKTIGEE

A0A6J1H5X4 multiple organellar RNA editing factor 3, mitochondrial9.5e-2870.65Show/hide
Query:  SSSSSFLLPSFISSRL--------QDYQIIPNSFNLPIRFKALGFEYSPLNDASPNWSNRPPKETTLLNGCDYEHWLIVMEFPNDPKTIGEE
        SSSSSF LPS ISSRL        +  +IIPNSFN P+RF+  G  YSPLND SPNWSNRPPKET LL+GCDYEHWLIVMEFPNDPK   EE
Subjt:  SSSSSFLLPSFISSRL--------QDYQIIPNSFNLPIRFKALGFEYSPLNDASPNWSNRPPKETTLLNGCDYEHWLIVMEFPNDPKTIGEE

A0A6J1L4U9 multiple organellar RNA editing factor 3, mitochondrial1.1e-2669.57Show/hide
Query:  SSSSSFLLPSFISSRL--------QDYQIIPNSFNLPIRFKALGFEYSPLNDASPNWSNRPPKETTLLNGCDYEHWLIVMEFPNDPKTIGEE
        SSSSS   PS ISSRL        +  QIIPNSFN P+RF+  G  YSPLND SPNWSNRPPKET LL+GCDYEHWLIVMEFPNDPK   EE
Subjt:  SSSSSFLLPSFISSRL--------QDYQIIPNSFNLPIRFKALGFEYSPLNDASPNWSNRPPKETTLLNGCDYEHWLIVMEFPNDPKTIGEE

SwissProt top hitse value%identityAlignment
O22793 Multiple organellar RNA editing factor 2, chloroplastic1.5e-0663.41Show/hide
Query:  GFEYSPLNDASPNWSNRPPKE-TTLLNGCDYEHWLIVMEFP
        G  YSPLN  S N+S+RPP E   L  GCDYEHWLIVM+ P
Subjt:  GFEYSPLNDASPNWSNRPPKE-TTLLNGCDYEHWLIVMEFP

O82169 Multiple organellar RNA editing factor 6, mitochondrial8.9e-0736.54Show/hide
Query:  TSSTTFLECLQHVIDSSSSSFLLPSFISSRLQDYQIIPNSFN-------------LPIRFKALGFEYSPLNDASPNWSNRPPKE-TTLLNGCDYEHWLIV
        T S +   C+     S+S++   PS + S L   +  P  F+             +  R    G  YSPL   S N+S+RPP E   L  GCDYEHWLIV
Subjt:  TSSTTFLECLQHVIDSSSSSFLLPSFISSRLQDYQIIPNSFN-------------LPIRFKALGFEYSPLNDASPNWSNRPPKE-TTLLNGCDYEHWLIV

Query:  MEFP
        ME P
Subjt:  MEFP

Q38732 DAG protein, chloroplastic1.5e-0638.74Show/hide
Query:  NLCPLSLLTSSTTFLECLQHVIDSSSSSFL---LPSFISSRLQDYQIIPNSFNLPIRFKAL-GFEYSPLNDASPNWSNRPPKETTLLNGCDYEHWLIVME
        +L P +L  +S T L  L  ++ +SS SFL    P  I SR   Y  +          +AL   EYS   + + N S    +ET +L GCDY HWLIVME
Subjt:  NLCPLSLLTSSTTFLECLQHVIDSSSSSFL---LPSFISSRLQDYQIIPNSFNLPIRFKAL-GFEYSPLNDASPNWSNRPPKETTLLNGCDYEHWLIVME

Query:  FPNDPKTIGEE
        FP DP    E+
Subjt:  FPNDPKTIGEE

Q84JZ6 Multiple organellar RNA editing factor 3, mitochondrial7.3e-1745.97Show/hide
Query:  HRQLHSSSTYNTSIDHQNLCPLSLLTSSTTFLECLQHVIDSSSSSFLLPSFISSRLQDYQIIPNSFNLPIRFKALGFEYSPLNDASPNWSNRPPKETTLL
        ++ L SS++Y++S           L+S + F   L   + SS +S L P +IS+R                 K  G  YSPLND SPNWSNRPPKET LL
Subjt:  HRQLHSSSTYNTSIDHQNLCPLSLLTSSTTFLECLQHVIDSSSSSFLLPSFISSRLQDYQIIPNSFNLPIRFKALGFEYSPLNDASPNWSNRPPKETTLL

Query:  NGCDYEHWLIVMEFPNDPKTIGEE
        +GCDYEHWLIVMEF  DPK   EE
Subjt:  NGCDYEHWLIVMEFPNDPKTIGEE

Q9LKA5 Multiple organellar RNA editing factor 8, chloroplastic/mitochondrial9.2e-1265.91Show/hide
Query:  SPLNDASPNWSNRPPKETTLLNGCDYEHWLIVMEFPNDPKTIGE
        S LND +PNWSNRPPKET LL+GCD+EHWL+V+E P    T  E
Subjt:  SPLNDASPNWSNRPPKETTLLNGCDYEHWLIVMEFPNDPKTIGE

Arabidopsis top hitse value%identityAlignment
AT2G33430.1 differentiation and greening-like 11.1e-0763.41Show/hide
Query:  GFEYSPLNDASPNWSNRPPKE-TTLLNGCDYEHWLIVMEFP
        G  YSPLN  S N+S+RPP E   L  GCDYEHWLIVM+ P
Subjt:  GFEYSPLNDASPNWSNRPPKE-TTLLNGCDYEHWLIVMEFP

AT2G35240.1 plastid developmental protein DAG, putative6.4e-0836.54Show/hide
Query:  TSSTTFLECLQHVIDSSSSSFLLPSFISSRLQDYQIIPNSFN-------------LPIRFKALGFEYSPLNDASPNWSNRPPKE-TTLLNGCDYEHWLIV
        T S +   C+     S+S++   PS + S L   +  P  F+             +  R    G  YSPL   S N+S+RPP E   L  GCDYEHWLIV
Subjt:  TSSTTFLECLQHVIDSSSSSFLLPSFISSRLQDYQIIPNSFN-------------LPIRFKALGFEYSPLNDASPNWSNRPPKE-TTLLNGCDYEHWLIV

Query:  MEFP
        ME P
Subjt:  MEFP

AT3G06790.1 plastid developmental protein DAG, putative5.2e-1845.97Show/hide
Query:  HRQLHSSSTYNTSIDHQNLCPLSLLTSSTTFLECLQHVIDSSSSSFLLPSFISSRLQDYQIIPNSFNLPIRFKALGFEYSPLNDASPNWSNRPPKETTLL
        ++ L SS++Y++S           L+S + F   L   + SS +S L P +IS+R                 K  G  YSPLND SPNWSNRPPKET LL
Subjt:  HRQLHSSSTYNTSIDHQNLCPLSLLTSSTTFLECLQHVIDSSSSSFLLPSFISSRLQDYQIIPNSFNLPIRFKALGFEYSPLNDASPNWSNRPPKETTLL

Query:  NGCDYEHWLIVMEFPNDPKTIGEE
        +GCDYEHWLIVMEF  DPK   EE
Subjt:  NGCDYEHWLIVMEFPNDPKTIGEE

AT3G06790.2 plastid developmental protein DAG, putative5.2e-1845.97Show/hide
Query:  HRQLHSSSTYNTSIDHQNLCPLSLLTSSTTFLECLQHVIDSSSSSFLLPSFISSRLQDYQIIPNSFNLPIRFKALGFEYSPLNDASPNWSNRPPKETTLL
        ++ L SS++Y++S           L+S + F   L   + SS +S L P +IS+R                 K  G  YSPLND SPNWSNRPPKET LL
Subjt:  HRQLHSSSTYNTSIDHQNLCPLSLLTSSTTFLECLQHVIDSSSSSFLLPSFISSRLQDYQIIPNSFNLPIRFKALGFEYSPLNDASPNWSNRPPKETTLL

Query:  NGCDYEHWLIVMEFPNDPKTIGEE
        +GCDYEHWLIVMEF  DPK   EE
Subjt:  NGCDYEHWLIVMEFPNDPKTIGEE

AT3G15000.1 cobalt ion binding6.6e-1365.91Show/hide
Query:  SPLNDASPNWSNRPPKETTLLNGCDYEHWLIVMEFPNDPKTIGE
        S LND +PNWSNRPPKET LL+GCD+EHWL+V+E P    T  E
Subjt:  SPLNDASPNWSNRPPKETTLLNGCDYEHWLIVMEFPNDPKTIGE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TGCCACCGTCAACTCCATTCCTCCAGCACCTACAACACGTCAATAGACCATCAGAATCTCTGCCCTCTCTCTCTTTTAACCTCTTCAACCACTTTCCTCGAATGCCTACA
ACACGTCATTGACTCATCTTCTTCTTCCTTCTTACTTCCATCTTTTATTTCTTCTCGTCTACAAGATTATCAAATAATCCCTAATTCATTCAATCTTCCTATTCGATTCA
AGGCTTTGGGATTCGAATACTCTCCACTCAACGATGCTTCTCCTAATTGGAGCAATAGACCTCCAAAAGAGACAACACTCCTCAATGGTTGCGATTACGAGCATTGGCTG
ATCGTGATGGAGTTTCCAAATGACCCTAAAACCATCGGAGAAGAAGGATTCTAA
mRNA sequenceShow/hide mRNA sequence
TGCCACCGTCAACTCCATTCCTCCAGCACCTACAACACGTCAATAGACCATCAGAATCTCTGCCCTCTCTCTCTTTTAACCTCTTCAACCACTTTCCTCGAATGCCTACA
ACACGTCATTGACTCATCTTCTTCTTCCTTCTTACTTCCATCTTTTATTTCTTCTCGTCTACAAGATTATCAAATAATCCCTAATTCATTCAATCTTCCTATTCGATTCA
AGGCTTTGGGATTCGAATACTCTCCACTCAACGATGCTTCTCCTAATTGGAGCAATAGACCTCCAAAAGAGACAACACTCCTCAATGGTTGCGATTACGAGCATTGGCTG
ATCGTGATGGAGTTTCCAAATGACCCTAAAACCATCGGAGAAGAAGGATTCTAA
Protein sequenceShow/hide protein sequence
CHRQLHSSSTYNTSIDHQNLCPLSLLTSSTTFLECLQHVIDSSSSSFLLPSFISSRLQDYQIIPNSFNLPIRFKALGFEYSPLNDASPNWSNRPPKETTLLNGCDYEHWL
IVMEFPNDPKTIGEEGF