CuGenDBv2

Gene ID	Lsi06G007440
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	ATP synthase subunit alpha, chloroplastic
Genome location	chr06:13440963..13442018
RNA-Seq Expression	Lsi06G007440
Synteny	Lsi06G007440
Gene Ontology terms	GO:0015986 - ATP synthesis coupled proton transport (biological process) GO:0005743 - mitochondrial inner membrane (cellular component) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1) (cellular component) GO:0005524 - ATP binding (molecular function) GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism (molecular function) GO:0046961 - proton-transporting ATPase activity, rotational mechanism (molecular function)
InterPro domains	IPR038376 - ATP synthase, alpha subunit, C-terminal domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

AHM90571.1 ATP synthase CF1 alpha subunit [Lagenaria siceraria]

3.1e-14

95.74

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Query:  EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLKKSIQE
        EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLK++IQE
Subjt:  EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLKKSIQE

YP_009317371.1 ATP synthase CF1 alpha subunit [Coccinia grandis]

3.1e-14

95.74

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Query:  EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLKKSIQE
        EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLK++IQE
Subjt:  EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLKKSIQE

YP_009325974.1 ATP synthase CF1 alpha subunit [Citrullus lanatus]

3.1e-14

95.74

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Query:  EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLKKSIQE
        EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLK++IQE
Subjt:  EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLKKSIQE

YP_009456131.1 ATP synthase CF1 alpha subunit [Lagenaria siceraria]

3.1e-14

95.74

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Query:  EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLKKSIQE
        EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLK++IQE
Subjt:  EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLKKSIQE

YP_010131079.1 ATP synthase CF1 alpha subunit [Benincasa hispida]

3.1e-14

95.74

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Query:  EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLKKSIQE
        EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLK++IQE
Subjt:  EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLKKSIQE

TrEMBL top hits

e value

%identity

Alignment

A0A1P8LD69 ATP synthase subunit alpha

1.5e-14

95.74

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Query:  EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLKKSIQE
        EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLK++IQE
Subjt:  EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLKKSIQE

A0A1P8LFL2 ATP synthase subunit alpha

1.5e-14

95.74

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Query:  EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLKKSIQE
        EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLK++IQE
Subjt:  EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLKKSIQE

A0A2Z2CGF6 ATP synthase subunit alpha, chloroplastic

1.5e-14

95.74

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Query:  EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLKKSIQE
        EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLK++IQE
Subjt:  EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLKKSIQE

A0A7T3USX6 ATP synthase CF1 alpha subunit

1.5e-14

95.74

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Query:  EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLKKSIQE
        EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLK++IQE
Subjt:  EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLKKSIQE

X2F439 ATP synthase subunit alpha, chloroplastic

1.5e-14

95.74

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Query:  EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLKKSIQE
        EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLK++IQE
Subjt:  EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLKKSIQE

SwissProt top hits

e value

%identity

Alignment

Q09X32 ATP synthase subunit alpha, chloroplastic

4.4e-16

91.49

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Query:  EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLKKSIQE
        EIGQVRKFLVELRTY+KTNKPQFQEIISSTKTFT EAEALLK++IQE
Subjt:  EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLKKSIQE

Q33C53 ATP synthase subunit alpha, chloroplastic

5.8e-16

89.36

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Query:  EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLKKSIQE
        E+GQVRKFLVELRTY+KTNKPQFQEIISSTKTFT EAEALLK++IQE
Subjt:  EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLKKSIQE

Q3C1H4 ATP synthase subunit alpha, chloroplastic

5.8e-16

89.36

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Query:  EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLKKSIQE
        E+GQVRKFLVELRTY+KTNKPQFQEIISSTKTFT EAEALLK++IQE
Subjt:  EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLKKSIQE

Q49L13 ATP synthase subunit alpha, chloroplastic

2.0e-16

93.62

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Query:  EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLKKSIQE
        EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFT EAEALLK++IQE
Subjt:  EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLKKSIQE

Q8S8Y3 ATP synthase subunit alpha, chloroplastic

5.8e-16

89.36

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Query:  EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLKKSIQE
        E+GQVRKFLVELRTY+KTNKPQFQEIISSTKTFT EAEALLK++IQE
Subjt:  EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLKKSIQE

Arabidopsis top hits

e value

%identity

Alignment

ATCG00120.1 ATP synthase subunit alpha

1.1e-14

80.85

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Query:  EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLKKSIQE
        EIGQVRKFLV+LRTY+KTNKPQFQEII+STKT T EAE+ LK+ IQE
Subjt:  EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLKKSIQE

Sequences

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CDS sequence

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ATGACGTGCTGGAGGAATGGAGTTGACGGTGGCACTTTGTTGTATTCACCAATGGAGATTGTAGCACCAGAAATTGGACAAGTAAGGAAATTTCTCGTTGAGTTACGTAC
TTACGTAAAAACGAATAAACCTCAGTTTCAAGAAATCATATCTTCCACGAAGACATTCACCAATGAAGCAGAAGCCCTTTTGAAAAAATCTATTCAGGAATAG

mRNA sequence

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Protein sequence

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MTCWRNGVDGGTLLYSPMEIVAPEIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLKKSIQE

Lsi06G007440 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome