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Lsi06G007530 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi06G007530
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionGlial fibrillary acidic protein-like
Genome locationchr06:13953388..13954988
RNA-Seq ExpressionLsi06G007530
SyntenyLsi06G007530
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032013.1 glial fibrillary acidic protein-like [Cucumis melo var. makuwa]5.5e-3758.13Show/hide
Query:  EDWDFSYESDETSAKVHKAVEAWKLVRIMKSPRHCEGTTAQYDNWRATRSRVEVAIMQESVNSSRTLNVGHENREKDLERLKEMNQVLATEIEELRKEVR
        EDW+FSYES+  + K+H+AVEAWK V+ MKS RHCEGTT QYDNWRA+R+ + +  M ES+  +  L   H+ +EK+L+RL+EMN V+ATE E+LR+EV+
Subjt:  EDWDFSYESDETSAKVHKAVEAWKLVRIMKSPRHCEGTTAQYDNWRATRSRVEVAIMQESVNSSRTLNVGHENREKDLERLKEMNQVLATEIEELRKEVR

Query:  RLVQQATSAQRQLEEAKQCLQKQPELEREIDSLNIEAIQMKKKNKRLLGDIVVLHNEAEA
        + VQQA + QR L+EAK   +K  ELE+E DSLN EAIQ++KKNKRLL +I  LH E EA
Subjt:  RLVQQATSAQRQLEEAKQCLQKQPELEREIDSLNIEAIQMKKKNKRLLGDIVVLHNEAEA

KAA0033221.1 uncharacterized protein E6C27_scaffold845G00100 [Cucumis melo var. makuwa]2.4e-2448.34Show/hide
Query:  EDWDFSYESDETSAKVHKAVEAWKLVRIMKSPRHCEGTTAQYDNWRATRSRVEVAIMQESVNSSRTLNVGHENREKDLERLKEMNQVLATEIEELRKEVR
        EDW+FSYES+  + K+H+AVEAWK V+ MKS RHCEGTT QYDNWRA+R+ + +  M ES+  +  L   H+ +EK+L+RL+EMN VLATE E+LR+EV+
Subjt:  EDWDFSYESDETSAKVHKAVEAWKLVRIMKSPRHCEGTTAQYDNWRATRSRVEVAIMQESVNSSRTLNVGHENREKDLERLKEMNQVLATEIEELRKEVR

Query:  RLVQQATSAQRQLEEAK----QCLQKQPELEREIDSLNIEAIQMKKKNKRL
        + VQQA +  R L+EAK    +       L+  I+    + I+ + KN  L
Subjt:  RLVQQATSAQRQLEEAK----QCLQKQPELEREIDSLNIEAIQMKKKNKRL

KGN65327.1 hypothetical protein Csa_019964 [Cucumis sativus]4.6e-1566.23Show/hide
Query:  MNQVLATEIEELRKEVRRLVQQATSAQRQLEEAKQCLQKQPELEREIDSLNIEAIQMKKKNKRLLGDIVVLHNEAEA
        M+ VLATE E LRKEV+R VQ+AT+++RQLEEA++ LQ+Q ELE++++SLNIEAIQ++KKNKRLL DI  +H+EAEA
Subjt:  MNQVLATEIEELRKEVRRLVQQATSAQRQLEEAKQCLQKQPELEREIDSLNIEAIQMKKKNKRLLGDIVVLHNEAEA

TYK16834.1 glial fibrillary acidic protein-like [Cucumis melo var. makuwa]5.5e-3758.13Show/hide
Query:  EDWDFSYESDETSAKVHKAVEAWKLVRIMKSPRHCEGTTAQYDNWRATRSRVEVAIMQESVNSSRTLNVGHENREKDLERLKEMNQVLATEIEELRKEVR
        EDW+FSYES+  + K+H+AVEAWK V+ MKS RHCEGTT QYDNWRA+R+ + +  M ES+  +  L   H+ +EK+L+RL+EMN V+ATE E+LR+EV+
Subjt:  EDWDFSYESDETSAKVHKAVEAWKLVRIMKSPRHCEGTTAQYDNWRATRSRVEVAIMQESVNSSRTLNVGHENREKDLERLKEMNQVLATEIEELRKEVR

Query:  RLVQQATSAQRQLEEAKQCLQKQPELEREIDSLNIEAIQMKKKNKRLLGDIVVLHNEAEA
        + VQQA + QR L+EAK   +K  ELE+E DSLN EAIQ++KKNKRLL +I  LH E EA
Subjt:  RLVQQATSAQRQLEEAKQCLQKQPELEREIDSLNIEAIQMKKKNKRLLGDIVVLHNEAEA

XP_008464352.1 PREDICTED: glial fibrillary acidic protein-like, partial [Cucumis melo]5.0e-1456.73Show/hide
Query:  MQESVNSSRTLNVGHENREKDLERLKEMNQVLATEIEELRKEVRRLVQQATSAQRQLEEAKQCLQKQPELEREIDSLNIEAIQMKKKNKRLLGDIVVLHN
        M ES+  +  L   H+ +EK+L+RL+EMN VLATE E+LR+EV++ VQQA + QR L+EAK   +K+ ELE+E DSLN EAIQ++KKNKRLL +I  LH 
Subjt:  MQESVNSSRTLNVGHENREKDLERLKEMNQVLATEIEELRKEVRRLVQQATSAQRQLEEAKQCLQKQPELEREIDSLNIEAIQMKKKNKRLLGDIVVLHN

Query:  EAEA
        E EA
Subjt:  EAEA

TrEMBL top hitse value%identityAlignment
A0A0A0LWU7 Uncharacterized protein2.2e-1566.23Show/hide
Query:  MNQVLATEIEELRKEVRRLVQQATSAQRQLEEAKQCLQKQPELEREIDSLNIEAIQMKKKNKRLLGDIVVLHNEAEA
        M+ VLATE E LRKEV+R VQ+AT+++RQLEEA++ LQ+Q ELE++++SLNIEAIQ++KKNKRLL DI  +H+EAEA
Subjt:  MNQVLATEIEELRKEVRRLVQQATSAQRQLEEAKQCLQKQPELEREIDSLNIEAIQMKKKNKRLLGDIVVLHNEAEA

A0A1S3CLQ1 glial fibrillary acidic protein-like2.4e-1456.73Show/hide
Query:  MQESVNSSRTLNVGHENREKDLERLKEMNQVLATEIEELRKEVRRLVQQATSAQRQLEEAKQCLQKQPELEREIDSLNIEAIQMKKKNKRLLGDIVVLHN
        M ES+  +  L   H+ +EK+L+RL+EMN VLATE E+LR+EV++ VQQA + QR L+EAK   +K+ ELE+E DSLN EAIQ++KKNKRLL +I  LH 
Subjt:  MQESVNSSRTLNVGHENREKDLERLKEMNQVLATEIEELRKEVRRLVQQATSAQRQLEEAKQCLQKQPELEREIDSLNIEAIQMKKKNKRLLGDIVVLHN

Query:  EAEA
        E EA
Subjt:  EAEA

A0A5A7SNY0 Glial fibrillary acidic protein-like2.7e-3758.13Show/hide
Query:  EDWDFSYESDETSAKVHKAVEAWKLVRIMKSPRHCEGTTAQYDNWRATRSRVEVAIMQESVNSSRTLNVGHENREKDLERLKEMNQVLATEIEELRKEVR
        EDW+FSYES+  + K+H+AVEAWK V+ MKS RHCEGTT QYDNWRA+R+ + +  M ES+  +  L   H+ +EK+L+RL+EMN V+ATE E+LR+EV+
Subjt:  EDWDFSYESDETSAKVHKAVEAWKLVRIMKSPRHCEGTTAQYDNWRATRSRVEVAIMQESVNSSRTLNVGHENREKDLERLKEMNQVLATEIEELRKEVR

Query:  RLVQQATSAQRQLEEAKQCLQKQPELEREIDSLNIEAIQMKKKNKRLLGDIVVLHNEAEA
        + VQQA + QR L+EAK   +K  ELE+E DSLN EAIQ++KKNKRLL +I  LH E EA
Subjt:  RLVQQATSAQRQLEEAKQCLQKQPELEREIDSLNIEAIQMKKKNKRLLGDIVVLHNEAEA

A0A5A7SUT0 Reverse transcriptase1.2e-2448.34Show/hide
Query:  EDWDFSYESDETSAKVHKAVEAWKLVRIMKSPRHCEGTTAQYDNWRATRSRVEVAIMQESVNSSRTLNVGHENREKDLERLKEMNQVLATEIEELRKEVR
        EDW+FSYES+  + K+H+AVEAWK V+ MKS RHCEGTT QYDNWRA+R+ + +  M ES+  +  L   H+ +EK+L+RL+EMN VLATE E+LR+EV+
Subjt:  EDWDFSYESDETSAKVHKAVEAWKLVRIMKSPRHCEGTTAQYDNWRATRSRVEVAIMQESVNSSRTLNVGHENREKDLERLKEMNQVLATEIEELRKEVR

Query:  RLVQQATSAQRQLEEAK----QCLQKQPELEREIDSLNIEAIQMKKKNKRL
        + VQQA +  R L+EAK    +       L+  I+    + I+ + KN  L
Subjt:  RLVQQATSAQRQLEEAK----QCLQKQPELEREIDSLNIEAIQMKKKNKRL

A0A5D3D0S2 Glial fibrillary acidic protein-like2.7e-3758.13Show/hide
Query:  EDWDFSYESDETSAKVHKAVEAWKLVRIMKSPRHCEGTTAQYDNWRATRSRVEVAIMQESVNSSRTLNVGHENREKDLERLKEMNQVLATEIEELRKEVR
        EDW+FSYES+  + K+H+AVEAWK V+ MKS RHCEGTT QYDNWRA+R+ + +  M ES+  +  L   H+ +EK+L+RL+EMN V+ATE E+LR+EV+
Subjt:  EDWDFSYESDETSAKVHKAVEAWKLVRIMKSPRHCEGTTAQYDNWRATRSRVEVAIMQESVNSSRTLNVGHENREKDLERLKEMNQVLATEIEELRKEVR

Query:  RLVQQATSAQRQLEEAKQCLQKQPELEREIDSLNIEAIQMKKKNKRLLGDIVVLHNEAEA
        + VQQA + QR L+EAK   +K  ELE+E DSLN EAIQ++KKNKRLL +I  LH E EA
Subjt:  RLVQQATSAQRQLEEAKQCLQKQPELEREIDSLNIEAIQMKKKNKRLLGDIVVLHNEAEA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGCCCGGGGTATTCGCCCAAACCACCCCTAGCGAAGACTCGTGGGAAGGTGTGGCACAATGGTCAGAGCAACTTCAACAAGAGTCAGGATTTGCTTGGCCTAAAAGA
AGATTGGGATTTCTCGTACGAATCTGATGAAACCAGTGCCAAGGTTCATAAAGCGGTGGAAGCATGGAAATTGGTCAGAATAATGAAGAGCCCACGACATTGCGAGGGCA
CTACAGCACAGTATGACAATTGGAGAGCAACCAGGAGCAGAGTCGAAGTTGCTATTATGCAGGAGTCAGTGAATTCGAGCAGAACTTTGAACGTAGGCCATGAAAACCGA
GAAAAGGATTTGGAGCGGTTGAAGGAGATGAACCAAGTCTTAGCAACAGAAATTGAAGAGTTGAGGAAAGAGGTTAGAAGATTGGTCCAACAAGCTACCAGTGCCCAGAG
GCAATTGGAAGAGGCAAAGCAGTGTCTCCAAAAGCAGCCAGAGTTGGAGAGGGAGATAGATTCTTTGAACATCGAAGCAATCCAGATGAAAAAGAAGAACAAGAGATTAT
TGGGAGATATTGTTGTGTTGCATAATGAGGCAGAAGCATAA
mRNA sequenceShow/hide mRNA sequence
ATGCGCCCGGGGTATTCGCCCAAACCACCCCTAGCGAAGACTCGTGGGAAGGTGTGGCACAATGGTCAGAGCAACTTCAACAAGAGTCAGGATTTGCTTGGCCTAAAAGA
AGATTGGGATTTCTCGTACGAATCTGATGAAACCAGTGCCAAGGTTCATAAAGCGGTGGAAGCATGGAAATTGGTCAGAATAATGAAGAGCCCACGACATTGCGAGGGCA
CTACAGCACAGTATGACAATTGGAGAGCAACCAGGAGCAGAGTCGAAGTTGCTATTATGCAGGAGTCAGTGAATTCGAGCAGAACTTTGAACGTAGGCCATGAAAACCGA
GAAAAGGATTTGGAGCGGTTGAAGGAGATGAACCAAGTCTTAGCAACAGAAATTGAAGAGTTGAGGAAAGAGGTTAGAAGATTGGTCCAACAAGCTACCAGTGCCCAGAG
GCAATTGGAAGAGGCAAAGCAGTGTCTCCAAAAGCAGCCAGAGTTGGAGAGGGAGATAGATTCTTTGAACATCGAAGCAATCCAGATGAAAAAGAAGAACAAGAGATTAT
TGGGAGATATTGTTGTGTTGCATAATGAGGCAGAAGCATAA
Protein sequenceShow/hide protein sequence
MRPGYSPKPPLAKTRGKVWHNGQSNFNKSQDLLGLKEDWDFSYESDETSAKVHKAVEAWKLVRIMKSPRHCEGTTAQYDNWRATRSRVEVAIMQESVNSSRTLNVGHENR
EKDLERLKEMNQVLATEIEELRKEVRRLVQQATSAQRQLEEAKQCLQKQPELEREIDSLNIEAIQMKKKNKRLLGDIVVLHNEAEA