; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi06G007630 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi06G007630
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionexosome complex component CSL4
Genome locationchr06:14465080..14483174
RNA-Seq ExpressionLsi06G007630
SyntenyLsi06G007630
Gene Ontology termsGO:0006396 - RNA processing (biological process)
GO:0000176 - nuclear exosome (RNase complex) (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR012340 - Nucleic acid-binding, OB-fold
IPR019495 - Exosome complex component CSL4, C-terminal
IPR025721 - Exosome complex component, N-terminal domain
IPR039771 - Exosome complex component Csl4


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6588300.1 Bifunctional TH2 protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]2.6e-6491.55Show/hide
Query:  MKEGEEETTEFVTPGEVLGKFSDIKPGRGAYVADNTVYASLSGFRRIIPPPTDSSDLRSTVEVTGHKAHGAVPAPGSIVIARVTKVMSKMASADIMCVGP
        MKEGEEE TEFVTPGEVLGKFSD+KPG+GAYVA+NTVYASLSGFRRII PPTDSSD R TVEVTGHKAHGAVPAPGSIVIARVTKVM +MASADIMCVGP
Subjt:  MKEGEEETTEFVTPGEVLGKFSDIKPGRGAYVADNTVYASLSGFRRIIPPPTDSSDLRSTVEVTGHKAHGAVPAPGSIVIARVTKVMSKMASADIMCVGP

Query:  KSVKEKFTGIIRQQDVRATEIDKVDMHLSFRPGDIVKALVVS
        KSVKEKF+G+IRQQDVRATEIDKVDMHLSFRPGDIVKALV+S
Subjt:  KSVKEKFTGIIRQQDVRATEIDKVDMHLSFRPGDIVKALVVS

XP_004144376.1 exosome complex component CSL4 [Cucumis sativus]1.2e-6492.25Show/hide
Query:  MKEGEEETTEFVTPGEVLGKFSDIKPGRGAYVADNTVYASLSGFRRIIPPPTDSSDLRSTVEVTGHKAHGAVPAPGSIVIARVTKVMSKMASADIMCVGP
        MKEGE++ TEFVTPGEVLG FSD KPGRGAYV DNTVYASLSGFRRII PP+DSSDLRSTVEVTGHKAHGAVPAPGSIVI RVTKVM+KMASADIMCVGP
Subjt:  MKEGEEETTEFVTPGEVLGKFSDIKPGRGAYVADNTVYASLSGFRRIIPPPTDSSDLRSTVEVTGHKAHGAVPAPGSIVIARVTKVMSKMASADIMCVGP

Query:  KSVKEKFTGIIRQQDVRATEIDKVDMHLSFRPGDIVKALVVS
        KSVKEKFTGIIRQQDVRATEIDKVDMHLSFRPGDIVKALV+S
Subjt:  KSVKEKFTGIIRQQDVRATEIDKVDMHLSFRPGDIVKALVVS

XP_008465048.1 PREDICTED: exosome complex component CSL4 [Cucumis melo]7.2e-6794.37Show/hide
Query:  MKEGEEETTEFVTPGEVLGKFSDIKPGRGAYVADNTVYASLSGFRRIIPPPTDSSDLRSTVEVTGHKAHGAVPAPGSIVIARVTKVMSKMASADIMCVGP
        MKEGE+E TEFVTPGE+LG FSD KPGRGAYVADNTVYASLSGFRRIIPPP+DSSDLRSTVEVTGHKAHGAVPAPGSIVIARVTKVM+KMASADIMCVGP
Subjt:  MKEGEEETTEFVTPGEVLGKFSDIKPGRGAYVADNTVYASLSGFRRIIPPPTDSSDLRSTVEVTGHKAHGAVPAPGSIVIARVTKVMSKMASADIMCVGP

Query:  KSVKEKFTGIIRQQDVRATEIDKVDMHLSFRPGDIVKALVVS
        KSVKEKFTGIIRQQDVRATEIDKVDMHLSFRPGDIVKALV+S
Subjt:  KSVKEKFTGIIRQQDVRATEIDKVDMHLSFRPGDIVKALVVS

XP_023530831.1 exosome complex component CSL4 [Cucurbita pepo subsp. pepo]1.8e-6591.67Show/hide
Query:  MTMKEGEEETTEFVTPGEVLGKFSDIKPGRGAYVADNTVYASLSGFRRIIPPPTDSSDLRSTVEVTGHKAHGAVPAPGSIVIARVTKVMSKMASADIMCV
        MTMKEGEEE TEFVTPGEVLGKFSD+KPG+GAYVA+NTVYASLSGFRRII PPTDSSD R TVEVTGHKAHGAVPAPGSIVIARVTKVM +MASADIMCV
Subjt:  MTMKEGEEETTEFVTPGEVLGKFSDIKPGRGAYVADNTVYASLSGFRRIIPPPTDSSDLRSTVEVTGHKAHGAVPAPGSIVIARVTKVMSKMASADIMCV

Query:  GPKSVKEKFTGIIRQQDVRATEIDKVDMHLSFRPGDIVKALVVS
        GPKSVKEKF+G+IRQQDVRATEIDKVDMHLSFRPGDIVKALV+S
Subjt:  GPKSVKEKFTGIIRQQDVRATEIDKVDMHLSFRPGDIVKALVVS

XP_038879159.1 exosome complex component CSL4 [Benincasa hispida]7.2e-6793.66Show/hide
Query:  MKEGEEETTEFVTPGEVLGKFSDIKPGRGAYVADNTVYASLSGFRRIIPPPTDSSDLRSTVEVTGHKAHGAVPAPGSIVIARVTKVMSKMASADIMCVGP
        MKEGEEETTEFVTPGEVLG FSD +PGRGAYV +NTVYASLSGFRR IPPPTDSSDLRSTVEVTGHKAHGAVPAPGSIVIARVTKVMSKMASADIMCVGP
Subjt:  MKEGEEETTEFVTPGEVLGKFSDIKPGRGAYVADNTVYASLSGFRRIIPPPTDSSDLRSTVEVTGHKAHGAVPAPGSIVIARVTKVMSKMASADIMCVGP

Query:  KSVKEKFTGIIRQQDVRATEIDKVDMHLSFRPGDIVKALVVS
        KSVKEKFTGIIRQQDVRA EIDKVDMHLSFRPGD+VKALV+S
Subjt:  KSVKEKFTGIIRQQDVRATEIDKVDMHLSFRPGDIVKALVVS

TrEMBL top hitse value%identityAlignment
A0A0A0L935 Uncharacterized protein5.6e-6592.25Show/hide
Query:  MKEGEEETTEFVTPGEVLGKFSDIKPGRGAYVADNTVYASLSGFRRIIPPPTDSSDLRSTVEVTGHKAHGAVPAPGSIVIARVTKVMSKMASADIMCVGP
        MKEGE++ TEFVTPGEVLG FSD KPGRGAYV DNTVYASLSGFRRII PP+DSSDLRSTVEVTGHKAHGAVPAPGSIVI RVTKVM+KMASADIMCVGP
Subjt:  MKEGEEETTEFVTPGEVLGKFSDIKPGRGAYVADNTVYASLSGFRRIIPPPTDSSDLRSTVEVTGHKAHGAVPAPGSIVIARVTKVMSKMASADIMCVGP

Query:  KSVKEKFTGIIRQQDVRATEIDKVDMHLSFRPGDIVKALVVS
        KSVKEKFTGIIRQQDVRATEIDKVDMHLSFRPGDIVKALV+S
Subjt:  KSVKEKFTGIIRQQDVRATEIDKVDMHLSFRPGDIVKALVVS

A0A1S3CMV8 exosome complex component CSL43.5e-6794.37Show/hide
Query:  MKEGEEETTEFVTPGEVLGKFSDIKPGRGAYVADNTVYASLSGFRRIIPPPTDSSDLRSTVEVTGHKAHGAVPAPGSIVIARVTKVMSKMASADIMCVGP
        MKEGE+E TEFVTPGE+LG FSD KPGRGAYVADNTVYASLSGFRRIIPPP+DSSDLRSTVEVTGHKAHGAVPAPGSIVIARVTKVM+KMASADIMCVGP
Subjt:  MKEGEEETTEFVTPGEVLGKFSDIKPGRGAYVADNTVYASLSGFRRIIPPPTDSSDLRSTVEVTGHKAHGAVPAPGSIVIARVTKVMSKMASADIMCVGP

Query:  KSVKEKFTGIIRQQDVRATEIDKVDMHLSFRPGDIVKALVVS
        KSVKEKFTGIIRQQDVRATEIDKVDMHLSFRPGDIVKALV+S
Subjt:  KSVKEKFTGIIRQQDVRATEIDKVDMHLSFRPGDIVKALVVS

A0A6J1DE54 exosome complex component CSL48.4e-6187.32Show/hide
Query:  MKEGEEETTEFVTPGEVLGKFSDIKPGRGAYVADNTVYASLSGFRRIIPPPTDSSDLRSTVEVTGHKAHGAVPAPGSIVIARVTKVMSKMASADIMCVGP
        MKE EE  T+FVTPGEVLGK SD+K G+GAYVA+NTVYASLSGFRRI+PPP +SSD R TVEVTGHKAHGAVPAPGS+VIARVT VMS+MASADIMCVGP
Subjt:  MKEGEEETTEFVTPGEVLGKFSDIKPGRGAYVADNTVYASLSGFRRIIPPPTDSSDLRSTVEVTGHKAHGAVPAPGSIVIARVTKVMSKMASADIMCVGP

Query:  KSVKEKFTGIIRQQDVRATEIDKVDMHLSFRPGDIVKALVVS
        KSVKEKFTGIIRQQDVRATEIDKVDMHLSFRPGDIVKALV+S
Subjt:  KSVKEKFTGIIRQQDVRATEIDKVDMHLSFRPGDIVKALVVS

A0A6J1F6G8 exosome complex component CSL44.7e-6490.85Show/hide
Query:  MKEGEEETTEFVTPGEVLGKFSDIKPGRGAYVADNTVYASLSGFRRIIPPPTDSSDLRSTVEVTGHKAHGAVPAPGSIVIARVTKVMSKMASADIMCVGP
        MKEGEEE TEFVTPGEVLGKFSD+KPG+GAYVA+NTVYASLSGFRRII PPTDSSD R TVEVTGHKAHGAVPAPGSIV ARVTKVM +MASADIMCVGP
Subjt:  MKEGEEETTEFVTPGEVLGKFSDIKPGRGAYVADNTVYASLSGFRRIIPPPTDSSDLRSTVEVTGHKAHGAVPAPGSIVIARVTKVMSKMASADIMCVGP

Query:  KSVKEKFTGIIRQQDVRATEIDKVDMHLSFRPGDIVKALVVS
        KSVKEKF+G+IRQQDVRATEIDKVDMHLSFRPGDIVKALV+S
Subjt:  KSVKEKFTGIIRQQDVRATEIDKVDMHLSFRPGDIVKALVVS

A0A6J1IH52 exosome complex component CSL42.1e-6490.91Show/hide
Query:  TMKEGEEETTEFVTPGEVLGKFSDIKPGRGAYVADNTVYASLSGFRRIIPPPTDSSDLRSTVEVTGHKAHGAVPAPGSIVIARVTKVMSKMASADIMCVG
        TMK GEEE TEFVTPGEVLGKFSD+KPG+GAYVA+NTVYASLSGFRRII PPTDSSD R TVEVTGHKAHGAVPAPGSIVIARVTKVM +MASADIMCVG
Subjt:  TMKEGEEETTEFVTPGEVLGKFSDIKPGRGAYVADNTVYASLSGFRRIIPPPTDSSDLRSTVEVTGHKAHGAVPAPGSIVIARVTKVMSKMASADIMCVG

Query:  PKSVKEKFTGIIRQQDVRATEIDKVDMHLSFRPGDIVKALVVS
        PKSVKEKF+G+IRQQDVRATEIDKVDMHLSFRPGDIVKALV+S
Subjt:  PKSVKEKFTGIIRQQDVRATEIDKVDMHLSFRPGDIVKALVVS

SwissProt top hitse value%identityAlignment
O59821 Exosome complex component csl41.1e-1236.64Show/hide
Query:  VTPGEVLGKFSDIKPGRGAYVADNTVYASLSGFRRIIPPPTDSSDLRSTVEVTGHKAHGAVPAPGSIVIARVTKVMSKMASADIMCVGPKSVKEKFTGII
        V PG+V+ +      G G     + + ++ +G   I  P  +S      VE T       +P  GSIV+ARV+++ ++ A+ +I  V     K++F G+I
Subjt:  VTPGEVLGKFSDIKPGRGAYVADNTVYASLSGFRRIIPPPTDSSDLRSTVEVTGHKAHGAVPAPGSIVIARVTKVMSKMASADIMCVGPKSVKEKFTGII

Query:  RQQDVRATEIDKVDMHLSFRPGDIVKALVVS
          QD+RATE +KV +  SFRPGDIV+ALV+S
Subjt:  RQQDVRATEIDKVDMHLSFRPGDIVKALVVS

P53859 Exosome complex component CSL41.1e-0429.41Show/hide
Query:  RSTVEVTGHKAHGAVPAPGSIVIARVTKVMSKMASADIMCVGPK----------------------------------SVKEKFTGIIRQQDVRATEIDK
        R T +   +     +P  G IV+ RVT++  + A+ +I+ V  K                                   + E F GIIR QDVR+T+ D+
Subjt:  RSTVEVTGHKAHGAVPAPGSIVIARVTKVMSKMASADIMCVGPK----------------------------------SVKEKFTGIIRQQDVRATEIDK

Query:  VDMHLSFRPGDIVKALVVS
        V +   F+PGDIV+A V+S
Subjt:  VDMHLSFRPGDIVKALVVS

Q9DAA6 Exosome complex component CSL43.0e-1535.61Show/hide
Query:  FVTPGEVLGKFSDIKPGRGAYVADNTVYASLSGFRRIIPPPTDSSDLRSTVEVTGHKAHGAVPAPGSIVIARVTKVMSKMASADIMCVGPKSVKEKFTGI
        +  PGE L    +  PG G Y     +++SL+G        T  +     V V        +P  G++V  +V+ + S+ A   I+ VG   +K  F G 
Subjt:  FVTPGEVLGKFSDIKPGRGAYVADNTVYASLSGFRRIIPPPTDSSDLRSTVEVTGHKAHGAVPAPGSIVIARVTKVMSKMASADIMCVGPKSVKEKFTGI

Query:  IRQQDVRATEIDKVDMHLSFRPGDIVKALVVS
        IR++D+RATE DKV+++ SFRPGDIV A V+S
Subjt:  IRQQDVRATEIDKVDMHLSFRPGDIVKALVVS

Q9Y3B2 Exosome complex component CSL42.3e-1536.36Show/hide
Query:  FVTPGEVLGKFSDIKPGRGAYVADNTVYASLSGFRRIIPPPTDSSDLRSTVEVTGHKAHGAVPAPGSIVIARVTKVMSKMASADIMCVGPKSVKEKFTGI
        +  PGE L    +  PG G Y     +++SL+G        +  +     V V        +P  G+IV  +V+ + S+ A   I+ VG   +K  F G 
Subjt:  FVTPGEVLGKFSDIKPGRGAYVADNTVYASLSGFRRIIPPPTDSSDLRSTVEVTGHKAHGAVPAPGSIVIARVTKVMSKMASADIMCVGPKSVKEKFTGI

Query:  IRQQDVRATEIDKVDMHLSFRPGDIVKALVVS
        IR++DVRATE DKV+++ SFRPGDIV A V+S
Subjt:  IRQQDVRATEIDKVDMHLSFRPGDIVKALVVS

Arabidopsis top hitse value%identityAlignment
AT5G38890.1 Nucleic acid-binding, OB-fold-like protein1.5e-4665.93Show/hide
Query:  TTEFVTPGEVLGKFSDIKPGRGAYVADNTVYASLSGFRRIIPPPTDSSDLRSTVEVTGHKAHGAVPAPGSIVIARVTKVMSKMASADIMCVGPKSVKEKF
        TT  VTPG+V+GK ++ K G+GAYV D T+YASL+G  RI+ P  +S D R+ VEVTGHKAHG +P  GS+VIARVTKVM+KMA+ DI+CVG K+V+E F
Subjt:  TTEFVTPGEVLGKFSDIKPGRGAYVADNTVYASLSGFRRIIPPPTDSSDLRSTVEVTGHKAHGAVPAPGSIVIARVTKVMSKMASADIMCVGPKSVKEKF

Query:  TGIIRQQDVRATEIDKVDMHLSFRPGDIVKALVVS
         G+IRQQDVRATEIDKVDMH SF  GDIV+A+V+S
Subjt:  TGIIRQQDVRATEIDKVDMHLSFRPGDIVKALVVS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAATGAAAGAAGGCGAGGAGGAGACTACTGAGTTCGTCACTCCAGGTGAAGTTCTCGGAAAATTTTCGGACATCAAACCTGGAAGAGGCGCTTATGTCGCCGACAA
CACTGTTTATGCTTCTCTTTCTGGTTTCCGCCGCATTATTCCTCCTCCCACTGACTCTTCGGATTTGAGATCAACTGTGGAAGTGACTGGTCATAAGGCCCATGGTGCTG
TTCCAGCTCCAGGATCTATTGTCATTGCTCGTGTCACAAAAGTAATGTCTAAAATGGCATCAGCTGATATCATGTGTGTTGGTCCAAAGTCTGTGAAGGAGAAGTTTACG
GGAATTATAAGGCAACAAGACGTTCGAGCAACGGAGATCGATAAAGTAGATATGCATTTGTCATTTCGTCCTGGTGACATTGTCAAAGCTCTTGTTGTATCCTTTCTGCC
TGAAATTCCTCTGTTGCATGTTCATAAAGGATGCAAAAGGCAGACTTAG
mRNA sequenceShow/hide mRNA sequence
CCGTAGGCGGCGAGGCCTTGGCTCGAAAAATTCTCTGCAACCAAAAGTAAAGCAGAGGGCAGCCCGCCAGTTTGAATTGAAACTCAGTCTGTTCCAAATCTTAAAACCTA
TACAGTGTTGATTCGACGGAGTTTGTGAGGATGACAATGAAAGAAGGCGAGGAGGAGACTACTGAGTTCGTCACTCCAGGTGAAGTTCTCGGAAAATTTTCGGACATCAA
ACCTGGAAGAGGCGCTTATGTCGCCGACAACACTGTTTATGCTTCTCTTTCTGGTTTCCGCCGCATTATTCCTCCTCCCACTGACTCTTCGGATTTGAGATCAACTGTGG
AAGTGACTGGTCATAAGGCCCATGGTGCTGTTCCAGCTCCAGGATCTATTGTCATTGCTCGTGTCACAAAAGTAATGTCTAAAATGGCATCAGCTGATATCATGTGTGTT
GGTCCAAAGTCTGTGAAGGAGAAGTTTACGGGAATTATAAGGCAACAAGACGTTCGAGCAACGGAGATCGATAAAGTAGATATGCATTTGTCATTTCGTCCTGGTGACAT
TGTCAAAGCTCTTGTTGTATCCTTTCTGCCTGAAATTCCTCTGTTGCATGTTCATAAAGGATGCAAAAGGCAGACTTAG
Protein sequenceShow/hide protein sequence
MTMKEGEEETTEFVTPGEVLGKFSDIKPGRGAYVADNTVYASLSGFRRIIPPPTDSSDLRSTVEVTGHKAHGAVPAPGSIVIARVTKVMSKMASADIMCVGPKSVKEKFT
GIIRQQDVRATEIDKVDMHLSFRPGDIVKALVVSFLPEIPLLHVHKGCKRQT