CuGenDBv2

Gene ID	Lsi06G007780
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	exportin-4 isoform X1
Genome location	chr06:15432603..15446230
RNA-Seq Expression	Lsi06G007780
Synteny	Lsi06G007780
Gene Ontology terms	GO:0006810 - transport (biological process)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAE8653609.1 hypothetical protein Csa_007263 [Cucumis sativus]

6.1e-41

61.88

Show/hide

Query:  SVVWFLSRWSSTYLLHPEEIITTNCNYGKEHDNKFQSQQTRKVIYSFFGEHGQGIPILDIIIRISATTLLSYPGEKDLHNIYGRQCSSGVSRNEDMYTKI
        SVVWFLSRWSSTYLLHPEEIITT  NYGKEHDN+FQSQ TRKVIYSFFGEHGQGIPILDIII I+ATTLLSYPGEKDLH                     
Subjt:  SVVWFLSRWSSTYLLHPEEIITTNCNYGKEHDNKFQSQQTRKVIYSFFGEHGQGIPILDIIIRISATTLLSYPGEKDLHNIYGRQCSSGVSRNEDMYTKI

Query:  NLIRFNYKVYTKTSYHDQQLHKALTCNQLLRALVRQKHICKHLVTLVNSNNVRRTNDDRK
                              ALTCNQLLRALVRQKHICKHLV L +  N+    D+ K
Subjt:  NLIRFNYKVYTKTSYHDQQLHKALTCNQLLRALVRQKHICKHLVTLVNSNNVRRTNDDRK

XP_011660267.1 exportin-4 isoform X2 [Cucumis sativus]

6.1e-41

61.88

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Query:  SVVWFLSRWSSTYLLHPEEIITTNCNYGKEHDNKFQSQQTRKVIYSFFGEHGQGIPILDIIIRISATTLLSYPGEKDLHNIYGRQCSSGVSRNEDMYTKI
        SVVWFLSRWSSTYLLHPEEIITT  NYGKEHDN+FQSQ TRKVIYSFFGEHGQGIPILDIII I+ATTLLSYPGEKDLH                     
Subjt:  SVVWFLSRWSSTYLLHPEEIITTNCNYGKEHDNKFQSQQTRKVIYSFFGEHGQGIPILDIIIRISATTLLSYPGEKDLHNIYGRQCSSGVSRNEDMYTKI

Query:  NLIRFNYKVYTKTSYHDQQLHKALTCNQLLRALVRQKHICKHLVTLVNSNNVRRTNDDRK
                              ALTCNQLLRALVRQKHICKHLV L +  N+    D+ K
Subjt:  NLIRFNYKVYTKTSYHDQQLHKALTCNQLLRALVRQKHICKHLVTLVNSNNVRRTNDDRK

XP_022158368.1 exportin-4 isoform X1 [Momordica charantia]

4.2e-42

59.38

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Query:  SVVWFLSRWSSTYLLHPEEIITTNCNYGKEHDNKFQSQQTRKVIYSFFGEHGQGIPILDIIIRISATTLLSYPGEKDLHNIYGRQCSSGVSRNEDMYTKI
        SVVWFLSRWSSTYLLHPEEIIT+NCNYGKEHD++FQ Q TRKV+YSFFGEHGQG+PILDII+RISATTLLSYPGEKDLH                     
Subjt:  SVVWFLSRWSSTYLLHPEEIITTNCNYGKEHDNKFQSQQTRKVIYSFFGEHGQGIPILDIIIRISATTLLSYPGEKDLHNIYGRQCSSGVSRNEDMYTKI

Query:  NLIRFNYKVYTKTSYHDQQLHKALTCNQLLRALVRQKHICKHLVTLVNSNNVRRTNDDRK
                              ALTCNQLL ALVRQKHIC HLV L +  N+    D+ K
Subjt:  NLIRFNYKVYTKTSYHDQQLHKALTCNQLLRALVRQKHICKHLVTLVNSNNVRRTNDDRK

XP_022158369.1 exportin-4 isoform X2 [Momordica charantia]

4.2e-42

59.38

Show/hide

Query:  SVVWFLSRWSSTYLLHPEEIITTNCNYGKEHDNKFQSQQTRKVIYSFFGEHGQGIPILDIIIRISATTLLSYPGEKDLHNIYGRQCSSGVSRNEDMYTKI
        SVVWFLSRWSSTYLLHPEEIIT+NCNYGKEHD++FQ Q TRKV+YSFFGEHGQG+PILDII+RISATTLLSYPGEKDLH                     
Subjt:  SVVWFLSRWSSTYLLHPEEIITTNCNYGKEHDNKFQSQQTRKVIYSFFGEHGQGIPILDIIIRISATTLLSYPGEKDLHNIYGRQCSSGVSRNEDMYTKI

Query:  NLIRFNYKVYTKTSYHDQQLHKALTCNQLLRALVRQKHICKHLVTLVNSNNVRRTNDDRK
                              ALTCNQLL ALVRQKHIC HLV L +  N+    D+ K
Subjt:  NLIRFNYKVYTKTSYHDQQLHKALTCNQLLRALVRQKHICKHLVTLVNSNNVRRTNDDRK

XP_022158370.1 exportin-4 isoform X3 [Momordica charantia]

4.2e-42

59.38

Show/hide

Query:  SVVWFLSRWSSTYLLHPEEIITTNCNYGKEHDNKFQSQQTRKVIYSFFGEHGQGIPILDIIIRISATTLLSYPGEKDLHNIYGRQCSSGVSRNEDMYTKI
        SVVWFLSRWSSTYLLHPEEIIT+NCNYGKEHD++FQ Q TRKV+YSFFGEHGQG+PILDII+RISATTLLSYPGEKDLH                     
Subjt:  SVVWFLSRWSSTYLLHPEEIITTNCNYGKEHDNKFQSQQTRKVIYSFFGEHGQGIPILDIIIRISATTLLSYPGEKDLHNIYGRQCSSGVSRNEDMYTKI

Query:  NLIRFNYKVYTKTSYHDQQLHKALTCNQLLRALVRQKHICKHLVTLVNSNNVRRTNDDRK
                              ALTCNQLL ALVRQKHIC HLV L +  N+    D+ K
Subjt:  NLIRFNYKVYTKTSYHDQQLHKALTCNQLLRALVRQKHICKHLVTLVNSNNVRRTNDDRK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0M0V8 Uncharacterized protein

2.9e-41

61.88

Show/hide

Query:  SVVWFLSRWSSTYLLHPEEIITTNCNYGKEHDNKFQSQQTRKVIYSFFGEHGQGIPILDIIIRISATTLLSYPGEKDLHNIYGRQCSSGVSRNEDMYTKI
        SVVWFLSRWSSTYLLHPEEIITT  NYGKEHDN+FQSQ TRKVIYSFFGEHGQGIPILDIII I+ATTLLSYPGEKDLH                     
Subjt:  SVVWFLSRWSSTYLLHPEEIITTNCNYGKEHDNKFQSQQTRKVIYSFFGEHGQGIPILDIIIRISATTLLSYPGEKDLHNIYGRQCSSGVSRNEDMYTKI

Query:  NLIRFNYKVYTKTSYHDQQLHKALTCNQLLRALVRQKHICKHLVTLVNSNNVRRTNDDRK
                              ALTCNQLLRALVRQKHICKHLV L +  N+    D+ K
Subjt:  NLIRFNYKVYTKTSYHDQQLHKALTCNQLLRALVRQKHICKHLVTLVNSNNVRRTNDDRK

A0A6J1DVN0 exportin-4 isoform X3

2.0e-42

59.38

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Query:  SVVWFLSRWSSTYLLHPEEIITTNCNYGKEHDNKFQSQQTRKVIYSFFGEHGQGIPILDIIIRISATTLLSYPGEKDLHNIYGRQCSSGVSRNEDMYTKI
        SVVWFLSRWSSTYLLHPEEIIT+NCNYGKEHD++FQ Q TRKV+YSFFGEHGQG+PILDII+RISATTLLSYPGEKDLH                     
Subjt:  SVVWFLSRWSSTYLLHPEEIITTNCNYGKEHDNKFQSQQTRKVIYSFFGEHGQGIPILDIIIRISATTLLSYPGEKDLHNIYGRQCSSGVSRNEDMYTKI

Query:  NLIRFNYKVYTKTSYHDQQLHKALTCNQLLRALVRQKHICKHLVTLVNSNNVRRTNDDRK
                              ALTCNQLL ALVRQKHIC HLV L +  N+    D+ K
Subjt:  NLIRFNYKVYTKTSYHDQQLHKALTCNQLLRALVRQKHICKHLVTLVNSNNVRRTNDDRK

A0A6J1DVW5 exportin-4 isoform X1

2.0e-42

59.38

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Query:  SVVWFLSRWSSTYLLHPEEIITTNCNYGKEHDNKFQSQQTRKVIYSFFGEHGQGIPILDIIIRISATTLLSYPGEKDLHNIYGRQCSSGVSRNEDMYTKI
        SVVWFLSRWSSTYLLHPEEIIT+NCNYGKEHD++FQ Q TRKV+YSFFGEHGQG+PILDII+RISATTLLSYPGEKDLH                     
Subjt:  SVVWFLSRWSSTYLLHPEEIITTNCNYGKEHDNKFQSQQTRKVIYSFFGEHGQGIPILDIIIRISATTLLSYPGEKDLHNIYGRQCSSGVSRNEDMYTKI

Query:  NLIRFNYKVYTKTSYHDQQLHKALTCNQLLRALVRQKHICKHLVTLVNSNNVRRTNDDRK
                              ALTCNQLL ALVRQKHIC HLV L +  N+    D+ K
Subjt:  NLIRFNYKVYTKTSYHDQQLHKALTCNQLLRALVRQKHICKHLVTLVNSNNVRRTNDDRK

A0A6J1DZ73 exportin-4 isoform X2

2.0e-42

59.38

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Query:  SVVWFLSRWSSTYLLHPEEIITTNCNYGKEHDNKFQSQQTRKVIYSFFGEHGQGIPILDIIIRISATTLLSYPGEKDLHNIYGRQCSSGVSRNEDMYTKI
        SVVWFLSRWSSTYLLHPEEIIT+NCNYGKEHD++FQ Q TRKV+YSFFGEHGQG+PILDII+RISATTLLSYPGEKDLH                     
Subjt:  SVVWFLSRWSSTYLLHPEEIITTNCNYGKEHDNKFQSQQTRKVIYSFFGEHGQGIPILDIIIRISATTLLSYPGEKDLHNIYGRQCSSGVSRNEDMYTKI

Query:  NLIRFNYKVYTKTSYHDQQLHKALTCNQLLRALVRQKHICKHLVTLVNSNNVRRTNDDRK
                              ALTCNQLL ALVRQKHIC HLV L +  N+    D+ K
Subjt:  NLIRFNYKVYTKTSYHDQQLHKALTCNQLLRALVRQKHICKHLVTLVNSNNVRRTNDDRK

A0A6J1HMV7 exportin-4 isoform X1

8.6e-41

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Query:  SVVWFLSRWSSTYLLHPEEIITTNCNYGKEHDNKFQSQQTRKVIYSFFGEHGQGIPILDIIIRISATTLLSYPGEKDLHNIYGRQCSSGVSRNEDMYTKI
        SVVWFLSRWSSTYLLHPEEIIT+NCNYGKEHD+ FQ+Q TRKV YSFFGEHGQGIPILD+II ISATTLLSYPGEKDLH                     
Subjt:  SVVWFLSRWSSTYLLHPEEIITTNCNYGKEHDNKFQSQQTRKVIYSFFGEHGQGIPILDIIIRISATTLLSYPGEKDLHNIYGRQCSSGVSRNEDMYTKI

Query:  NLIRFNYKVYTKTSYHDQQLHKALTCNQLLRALVRQKHICKHLVTLVNSNNVRRTNDDRK
                              ALTCNQLLRALVRQKHIC HLV+L +  N+    D+ K
Subjt:  NLIRFNYKVYTKTSYHDQQLHKALTCNQLLRALVRQKHICKHLVTLVNSNNVRRTNDDRK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G04490.1 unknown protein

1.8e-19

38.82

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Query:  SVVWFLSRWSSTYLLHPEEIITTNCNYGKEHDNKFQSQQTRKVIYSFFGEHGQGIPILDIIIRISATTLLSYPGEKDLHNIYGRQCSSGVSRNEDMYTKI
        +V+WFL+RWS TYLL  EE     CN G    NK QS  +R  ++++F EH QG  +LDII+RIS T+L SYPGEKDL                      
Subjt:  SVVWFLSRWSSTYLLHPEEIITTNCNYGKEHDNKFQSQQTRKVIYSFFGEHGQGIPILDIIIRISATTLLSYPGEKDLHNIYGRQCSSGVSRNEDMYTKI

Query:  NLIRFNYKVYTKTSYHDQQLHKALTCNQLLRALVRQKHICKHLVTLVNSNNV
                             + LTC QLL ALVR+++IC HL++L +  N+
Subjt:  NLIRFNYKVYTKTSYHDQQLHKALTCNQLLRALVRQKHICKHLVTLVNSNNV

Sequences

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CDS sequence

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ATGCAAGATACTAACACAAAACACGATGAAAGAATCGATTGTTTCTCTTTTTTGGTTGTCTTGGCTAAAGCGGTGACACAAAAGAACAACAGACAAAAAGATGATTGCTG
CTCTTTAACCTTTCTACATGGCACACACTGCCCGTGGGATACTTCAGTTGTATGGTTTCTATCAAGATGGTCATCAACATATTTACTTCACCCTGAAGAAATCATCACTA
CTAACTGCAATTATGGTAAAGAACATGATAATAAGTTCCAGTCACAGCAAACCAGGAAAGTCATTTACAGCTTTTTTGGAGAACACGGCCAAGGAATTCCTATACTTGAT
ATTATTATTCGCATATCAGCAACTACACTTTTGTCTTATCCTGGGGAAAAAGACTTGCATAACATTTATGGAAGGCAATGCTCTTCAGGCGTGAGCAGAAACGAGGACAT
GTATACCAAGATCAATTTGATAAGATTTAACTATAAAGTCTATACCAAGACAAGTTATCATGATCAGCAACTACACAAGGCACTCACATGTAACCAACTACTTCGTGCAC
TTGTTCGTCAGAAACATATTTGCAAACATCTTGTTACACTGGTGAACTCCAATAATGTGCGGCGAACGAACGACGATAGAAAGCCTACAGTCGGCGGACGTTTGGTGCAG
ACGCCAATAATGTCCGGCAAACGAATGGCGATAGAAAGCCTACGGCCGGCGGACGAAACTTTTTGTTGGAGGTGCGAGCGGTGA

mRNA sequence

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Protein sequence

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MQDTNTKHDERIDCFSFLVVLAKAVTQKNNRQKDDCCSLTFLHGTHCPWDTSVVWFLSRWSSTYLLHPEEIITTNCNYGKEHDNKFQSQQTRKVIYSFFGEHGQGIPILD
IIIRISATTLLSYPGEKDLHNIYGRQCSSGVSRNEDMYTKINLIRFNYKVYTKTSYHDQQLHKALTCNQLLRALVRQKHICKHLVTLVNSNNVRRTNDDRKPTVGGRLVQ
TPIMSGKRMAIESLRPADETFCWRCER

Lsi06G007780 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome