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Lsi06G008060 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi06G008060
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionCalcium-binding EF hand family protein
Genome locationchr06:16872415..16872804
RNA-Seq ExpressionLsi06G008060
SyntenyLsi06G008060
Gene Ontology termsGO:0005509 - calcium ion binding (molecular function)
InterPro domainsIPR002048 - EF-hand domain
IPR011992 - EF-hand domain pair
IPR018247 - EF-Hand 1, calcium-binding site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYJ95513.1 calcium-binding EF hand family protein [Cucumis melo var. makuwa]1.3e-5588.37Show/hide
Query:  MSVAFLNDTTVTNFINDTKIFDDCIKESFKKLDTDNDGVLNVNELRVGFRGQPLEFELMDPVDDLSEVVCHKFHVEKNGGIDEKEFKSVIRDILLAMAHG
        MSVAFLNDTTVTNFINDTKIFDDC+KESFKKLD DNDG LN NELR GF  QPLE ELMDPVDDL EVVCHKF+VEK+GGIDE EFKSV+RDILLAMA G
Subjt:  MSVAFLNDTTVTNFINDTKIFDDCIKESFKKLDTDNDGVLNVNELRVGFRGQPLEFELMDPVDDLSEVVCHKFHVEKNGGIDEKEFKSVIRDILLAMAHG

Query:  IGNFPLQVALQQDSFLMKAVEHEKAKEQK
        IGNFPLQVALQQDSFLMKAVE EKAKEQK
Subjt:  IGNFPLQVALQQDSFLMKAVEHEKAKEQK

XP_004142569.1 uncharacterized protein LOC101222885 [Cucumis sativus]4.4e-5991.47Show/hide
Query:  MSVAFLNDTTVTNFINDTKIFDDCIKESFKKLDTDNDGVLNVNELRVGFRGQPLEFELMDPVDDLSEVVCHKFHVEKNGGIDEKEFKSVIRDILLAMAHG
        MSVAFLNDTTVTNFINDTKIFDDC+KESFKKLDTDNDG LN+NELRVGFR  PLEFELMDPVDDLSEVVCHKF VEK+GGIDE+EFKSVIRDILLAMA G
Subjt:  MSVAFLNDTTVTNFINDTKIFDDCIKESFKKLDTDNDGVLNVNELRVGFRGQPLEFELMDPVDDLSEVVCHKFHVEKNGGIDEKEFKSVIRDILLAMAHG

Query:  IGNFPLQVALQQDSFLMKAVEHEKAKEQK
        IGNFPLQVALQQDSFLMKAVE EKA+EQK
Subjt:  IGNFPLQVALQQDSFLMKAVEHEKAKEQK

XP_008462771.1 PREDICTED: uncharacterized protein LOC103501058 [Cucumis melo]2.7e-5689.92Show/hide
Query:  MSVAFLNDTTVTNFINDTKIFDDCIKESFKKLDTDNDGVLNVNELRVGFRGQPLEFELMDPVDDLSEVVCHKFHVEKNGGIDEKEFKSVIRDILLAMAHG
        MSVAFLNDTTVTNFINDTKIFDDC+KESFKKLD DNDG LN NELR GF  QPLE ELMDPVDDL EVVCHKF+VEK+GGIDEKEFKSVIRDILLAMA G
Subjt:  MSVAFLNDTTVTNFINDTKIFDDCIKESFKKLDTDNDGVLNVNELRVGFRGQPLEFELMDPVDDLSEVVCHKFHVEKNGGIDEKEFKSVIRDILLAMAHG

Query:  IGNFPLQVALQQDSFLMKAVEHEKAKEQK
        IGNFPLQVALQQDSFLMKAVE EKAKEQK
Subjt:  IGNFPLQVALQQDSFLMKAVEHEKAKEQK

XP_022158640.1 uncharacterized protein LOC111025096 [Momordica charantia]7.6e-4371.09Show/hide
Query:  MSVAFLNDTTVTNFINDTKIFDDCIKESFKKLDTDNDGVLNVNELRVGFRGQPLEFELMDPVDDLSEVVCHKFHVEKNGGIDEKEFKSVIRDILLAMAHG
        MSVAFLNDTTV +FINDTKIFD+C+KESF+KLD D DG+LN NEL  GFR         DPVDDLS+ VC KF+VEK+GGI+E EFKSV+ +ILLA+A+G
Subjt:  MSVAFLNDTTVTNFINDTKIFDDCIKESFKKLDTDNDGVLNVNELRVGFRGQPLEFELMDPVDDLSEVVCHKFHVEKNGGIDEKEFKSVIRDILLAMAHG

Query:  IGNFPLQVALQQDSFLMKAVEHEKAKEQ
        IGN PLQVALQQD  LMKAVEHE+AKE+
Subjt:  IGNFPLQVALQQDSFLMKAVEHEKAKEQ

XP_034925333.1 uncharacterized protein LOC118056988 [Populus alba]7.9e-2447.62Show/hide
Query:  MSVAFLNDTTVTNFINDTKIFDDCIKESFKKLDTDNDGVLNVNELRVGF---RGQPLEFELMDPVDDLSEVVCHKFHVEKNGGIDEKEFKSVIRDILLAM
        MS+A +N+TTVT F+ D K F++C+KE F+ LD D DGVL+ +ELR GF        E    + +D L + +  +F  ++NG ID +EFK +IR+++ AM
Subjt:  MSVAFLNDTTVTNFINDTKIFDDCIKESFKKLDTDNDGVLNVNELRVGF---RGQPLEFELMDPVDDLSEVVCHKFHVEKNGGIDEKEFKSVIRDILLAM

Query:  AHGIGNFPLQVALQQDSFLMKAVEHE
          G+GN P+ VAL+ DS LMKAVEHE
Subjt:  AHGIGNFPLQVALQQDSFLMKAVEHE

TrEMBL top hitse value%identityAlignment
A0A0A0LYD8 Uncharacterized protein2.1e-5991.47Show/hide
Query:  MSVAFLNDTTVTNFINDTKIFDDCIKESFKKLDTDNDGVLNVNELRVGFRGQPLEFELMDPVDDLSEVVCHKFHVEKNGGIDEKEFKSVIRDILLAMAHG
        MSVAFLNDTTVTNFINDTKIFDDC+KESFKKLDTDNDG LN+NELRVGFR  PLEFELMDPVDDLSEVVCHKF VEK+GGIDE+EFKSVIRDILLAMA G
Subjt:  MSVAFLNDTTVTNFINDTKIFDDCIKESFKKLDTDNDGVLNVNELRVGFRGQPLEFELMDPVDDLSEVVCHKFHVEKNGGIDEKEFKSVIRDILLAMAHG

Query:  IGNFPLQVALQQDSFLMKAVEHEKAKEQK
        IGNFPLQVALQQDSFLMKAVE EKA+EQK
Subjt:  IGNFPLQVALQQDSFLMKAVEHEKAKEQK

A0A1S3CI80 uncharacterized protein LOC1035010581.3e-5689.92Show/hide
Query:  MSVAFLNDTTVTNFINDTKIFDDCIKESFKKLDTDNDGVLNVNELRVGFRGQPLEFELMDPVDDLSEVVCHKFHVEKNGGIDEKEFKSVIRDILLAMAHG
        MSVAFLNDTTVTNFINDTKIFDDC+KESFKKLD DNDG LN NELR GF  QPLE ELMDPVDDL EVVCHKF+VEK+GGIDEKEFKSVIRDILLAMA G
Subjt:  MSVAFLNDTTVTNFINDTKIFDDCIKESFKKLDTDNDGVLNVNELRVGFRGQPLEFELMDPVDDLSEVVCHKFHVEKNGGIDEKEFKSVIRDILLAMAHG

Query:  IGNFPLQVALQQDSFLMKAVEHEKAKEQK
        IGNFPLQVALQQDSFLMKAVE EKAKEQK
Subjt:  IGNFPLQVALQQDSFLMKAVEHEKAKEQK

A0A5A7VAA7 Calcium-binding EF hand family protein1.3e-5689.92Show/hide
Query:  MSVAFLNDTTVTNFINDTKIFDDCIKESFKKLDTDNDGVLNVNELRVGFRGQPLEFELMDPVDDLSEVVCHKFHVEKNGGIDEKEFKSVIRDILLAMAHG
        MSVAFLNDTTVTNFINDTKIFDDC+KESFKKLD DNDG LN NELR GF  QPLE ELMDPVDDL EVVCHKF+VEK+GGIDEKEFKSVIRDILLAMA G
Subjt:  MSVAFLNDTTVTNFINDTKIFDDCIKESFKKLDTDNDGVLNVNELRVGFRGQPLEFELMDPVDDLSEVVCHKFHVEKNGGIDEKEFKSVIRDILLAMAHG

Query:  IGNFPLQVALQQDSFLMKAVEHEKAKEQK
        IGNFPLQVALQQDSFLMKAVE EKAKEQK
Subjt:  IGNFPLQVALQQDSFLMKAVEHEKAKEQK

A0A5D3B8A7 Calcium-binding EF hand family protein6.4e-5688.37Show/hide
Query:  MSVAFLNDTTVTNFINDTKIFDDCIKESFKKLDTDNDGVLNVNELRVGFRGQPLEFELMDPVDDLSEVVCHKFHVEKNGGIDEKEFKSVIRDILLAMAHG
        MSVAFLNDTTVTNFINDTKIFDDC+KESFKKLD DNDG LN NELR GF  QPLE ELMDPVDDL EVVCHKF+VEK+GGIDE EFKSV+RDILLAMA G
Subjt:  MSVAFLNDTTVTNFINDTKIFDDCIKESFKKLDTDNDGVLNVNELRVGFRGQPLEFELMDPVDDLSEVVCHKFHVEKNGGIDEKEFKSVIRDILLAMAHG

Query:  IGNFPLQVALQQDSFLMKAVEHEKAKEQK
        IGNFPLQVALQQDSFLMKAVE EKAKEQK
Subjt:  IGNFPLQVALQQDSFLMKAVEHEKAKEQK

A0A6J1DWE2 uncharacterized protein LOC1110250963.7e-4371.09Show/hide
Query:  MSVAFLNDTTVTNFINDTKIFDDCIKESFKKLDTDNDGVLNVNELRVGFRGQPLEFELMDPVDDLSEVVCHKFHVEKNGGIDEKEFKSVIRDILLAMAHG
        MSVAFLNDTTV +FINDTKIFD+C+KESF+KLD D DG+LN NEL  GFR         DPVDDLS+ VC KF+VEK+GGI+E EFKSV+ +ILLA+A+G
Subjt:  MSVAFLNDTTVTNFINDTKIFDDCIKESFKKLDTDNDGVLNVNELRVGFRGQPLEFELMDPVDDLSEVVCHKFHVEKNGGIDEKEFKSVIRDILLAMAHG

Query:  IGNFPLQVALQQDSFLMKAVEHEKAKEQ
        IGN PLQVALQQD  LMKAVEHE+AKE+
Subjt:  IGNFPLQVALQQDSFLMKAVEHEKAKEQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G54530.1 Calcium-binding EF hand family protein2.5e-1233.88Show/hide
Query:  LNDTTVTNFINDTKIFDDCIKESFKKLDTDNDGVLNVNELRVGFRG-QPLEFELM--DPVDDLSEVVCHKFHVEKNGGIDEKEFKSVIRDILLAMAHGIG
        +   T+  F++DTK F+    + F+ LD D +G+L+ +ELR G      +E E+   D  D++   +  +F  +    +  K F+ +I +IL AMA GIG
Subjt:  LNDTTVTNFINDTKIFDDCIKESFKKLDTDNDGVLNVNELRVGFRG-QPLEFELM--DPVDDLSEVVCHKFHVEKNGGIDEKEFKSVIRDILLAMAHGIG

Query:  NFPLQVALQQDSFLMKAVEHE
        N P+ + +  D  +MKAV HE
Subjt:  NFPLQVALQQDSFLMKAVEHE

AT2G41860.1 calcium-dependent protein kinase 144.3e-0431.82Show/hide
Query:  CIKESFKKLDTDNDGVLNVNELRVGFRGQPLEFELMDPVDDLSEVVCHKFHVEKNGGIDEKEFKSV
        CIKE F+ +DT N G + + EL +G +    +  ++ P DD+ +++     V+K+G +D  EF ++
Subjt:  CIKESFKKLDTDNDGVLNVNELRVGFRGQPLEFELMDPVDDLSEVVCHKFHVEKNGGIDEKEFKSV

AT2G41860.2 calcium-dependent protein kinase 144.3e-0431.82Show/hide
Query:  CIKESFKKLDTDNDGVLNVNELRVGFRGQPLEFELMDPVDDLSEVVCHKFHVEKNGGIDEKEFKSV
        CIKE F+ +DT N G + + EL +G +    +  ++ P DD+ +++     V+K+G +D  EF ++
Subjt:  CIKESFKKLDTDNDGVLNVNELRVGFRGQPLEFELMDPVDDLSEVVCHKFHVEKNGGIDEKEFKSV

AT2G44310.1 Calcium-binding EF-hand family protein1.4e-1533.09Show/hide
Query:  MSVAFLNDTTVTNFINDTKIFDDCIKESFKKLDTDNDGVLNVNELRVGFRGQPL-----EFELMDPVDDLSEV---VCHKFHVEKNGGIDEKEFKSVIRD
        M V  ++ +TV +F++D + F   + E F  LD + DGVL+ +ELR  F    L       +++ P D+L+ +   +  KF  +++G +D +EF+S ++ 
Subjt:  MSVAFLNDTTVTNFINDTKIFDDCIKESFKKLDTDNDGVLNVNELRVGFRGQPL-----EFELMDPVDDLSEV---VCHKFHVEKNGGIDEKEFKSVIRD

Query:  ILLAMAHGIGNFPLQVAL--QQDSFLMKAVEHEKAKEQK
        I+LA+A G+G+ P+ + L    D+FL KA + E +K +K
Subjt:  ILLAMAHGIGNFPLQVAL--QQDSFLMKAVEHEKAKEQK

AT4G38810.2 Calcium-binding EF-hand family protein1.1e-0730.7Show/hide
Query:  LNDTTVTNFINDTKIFDDCIKESFKKLDTDNDGVLNVNELRVGFR------GQPLEFELMDPVDDLSEVVCHKFHVEKNGGIDEKEFKSVIRDILLAMAH
        L+ + +   + + K+FD  +++ F++LD D DG L+V EL+          G P +    D  D +   V ++F       + + EFK V+ DILL MA 
Subjt:  LNDTTVTNFINDTKIFDDCIKESFKKLDTDNDGVLNVNELRVGFR------GQPLEFELMDPVDDLSEVVCHKFHVEKNGGIDEKEFKSVIRDILLAMAH

Query:  GIGNFPLQVALQQD
        G+   P+ V L+ D
Subjt:  GIGNFPLQVALQQD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTGTGGCTTTTCTTAATGATACAACAGTTACAAATTTCATCAATGACACAAAGATATTTGACGATTGCATCAAGGAAAGTTTTAAGAAGCTTGACACAGACAATGA
TGGGGTCCTCAATGTGAATGAACTTCGAGTCGGGTTTCGAGGTCAGCCATTAGAATTCGAATTAATGGATCCTGTGGATGATCTATCTGAGGTTGTTTGTCATAAGTTTC
ATGTGGAGAAAAATGGTGGGATTGATGAAAAAGAGTTTAAGTCTGTAATAAGGGACATTCTTCTTGCCATGGCTCATGGGATTGGAAACTTTCCTCTCCAAGTTGCACTT
CAACAAGATAGTTTTCTCATGAAGGCTGTTGAACATGAAAAGGCCAAAGAACAAAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGAGTGTGGCTTTTCTTAATGATACAACAGTTACAAATTTCATCAATGACACAAAGATATTTGACGATTGCATCAAGGAAAGTTTTAAGAAGCTTGACACAGACAATGA
TGGGGTCCTCAATGTGAATGAACTTCGAGTCGGGTTTCGAGGTCAGCCATTAGAATTCGAATTAATGGATCCTGTGGATGATCTATCTGAGGTTGTTTGTCATAAGTTTC
ATGTGGAGAAAAATGGTGGGATTGATGAAAAAGAGTTTAAGTCTGTAATAAGGGACATTCTTCTTGCCATGGCTCATGGGATTGGAAACTTTCCTCTCCAAGTTGCACTT
CAACAAGATAGTTTTCTCATGAAGGCTGTTGAACATGAAAAGGCCAAAGAACAAAAATAG
Protein sequenceShow/hide protein sequence
MSVAFLNDTTVTNFINDTKIFDDCIKESFKKLDTDNDGVLNVNELRVGFRGQPLEFELMDPVDDLSEVVCHKFHVEKNGGIDEKEFKSVIRDILLAMAHGIGNFPLQVAL
QQDSFLMKAVEHEKAKEQK