; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi06G008210 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi06G008210
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr06:17348443..17450960
RNA-Seq ExpressionLsi06G008210
SyntenyLsi06G008210
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0043167 - ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
VFQ61539.1 unnamed protein product [Cuscuta campestris]5.3e-2242.36Show/hide
Query:  RPAKS-----EKMEDIINKLTTMKIDFVDELQTLFLVKFF----------VRQLGNLGVLSLDVIKQNMFKEEIRRKEMGFDNSHALVVDNRGRNKSMGP
        +P KS        +DIINKLT MKI F DELQ LFL+             +    + GVLSLDVIK++MF EE+RRKEMG D S ALVV+NRGR+KS GP
Subjt:  RPAKS-----EKMEDIINKLTTMKIDFVDELQTLFLVKFF----------VRQLGNLGVLSLDVIKQNMFKEEIRRKEMGFDNSHALVVDNRGRNKSMGP

Query:  KGHGNSKGRSESVD-KETKTCHYCNKSDRIKSFTTVGSKNKPTNENI-----DDVH---------DDVGKIQHGGNVPEHVDDDDFDESSSNEQIVVVIL
        KG G SK RS+S D +E   CHYC+KS  I+ F     +++   +N      DD +         D V  +   G+   HVD+ D +       +++V L
Subjt:  KGHGNSKGRSESVD-KETKTCHYCNKSDRIKSFTTVGSKNKPTNENI-----DDVH---------DDVGKIQHGGNVPEHVDDDDFDESSSNEQIVVVIL

Query:  IVS
        I S
Subjt:  IVS

VFQ64040.1 unnamed protein product [Cuscuta campestris]9.9e-2151.88Show/hide
Query:  EDIINKLTTMKIDFVDELQTLFLV-------KFFVRQLGNL---GVLSLDVIKQNMFKEEIRRKEMGFDNSHALVVDNRGRNKSMGPKGHGNSKGRSESV
        +DIINKLT MKI F DELQ LFL+       +  +  + N    GVLSLDVIK++MF EE+RRKEMG D S  LVV+NRGR+KS GPKG G SK RS+S 
Subjt:  EDIINKLTTMKIDFVDELQTLFLV-------KFFVRQLGNL---GVLSLDVIKQNMFKEEIRRKEMGFDNSHALVVDNRGRNKSMGPKGHGNSKGRSESV

Query:  D-KETKTCHYCNKSDRIKSFTTVGSKNKPTNEN
        D +E   CHYC+K   I+ F     +++   +N
Subjt:  D-KETKTCHYCNKSDRIKSFTTVGSKNKPTNEN

VFQ64369.1 unnamed protein product [Cuscuta campestris]1.5e-2150.68Show/hide
Query:  RPAKS-----EKMEDIINKLTTMKIDFVDELQTLFLV-------KFFVRQLGNL---GVLSLDVIKQNMFKEEIRRKEMGFDNSHALVVDNRGRNKSMGP
        +P KS        +DIINKLT MKI F DELQ LFL+       +  V  + N    GVLSLDVIK++MF EE+RRKEMG D S ALVV+NRGR+KS GP
Subjt:  RPAKS-----EKMEDIINKLTTMKIDFVDELQTLFLV-------KFFVRQLGNL---GVLSLDVIKQNMFKEEIRRKEMGFDNSHALVVDNRGRNKSMGP

Query:  KGHGNSKGRSESVD-KETKTCHYCNKSDRIKSFTTVGSKNKPTNEN
        KG G SK RS+S D +E   CHYC+K   I+ F     +++   +N
Subjt:  KGHGNSKGRSESVD-KETKTCHYCNKSDRIKSFTTVGSKNKPTNEN

VFQ71237.1 unnamed protein product [Cuscuta campestris]6.4e-2050.38Show/hide
Query:  EDIINKLTTMKIDFVDELQTLFLV-------KFFVRQLGNL---GVLSLDVIKQNMFKEEIRRKEMGFDNSHALVVDNRGRNKSMGPKGHGNSKGRSESV
        +DIINK+T MKI F DELQ LFL+       +  V  + N    GVLSLDVIK++MF +E+RRK+MG D S  LVV+NRGR+KS GPKG G SK RS+S 
Subjt:  EDIINKLTTMKIDFVDELQTLFLV-------KFFVRQLGNL---GVLSLDVIKQNMFKEEIRRKEMGFDNSHALVVDNRGRNKSMGPKGHGNSKGRSESV

Query:  D-KETKTCHYCNKSDRIKSFTTVGSKNKPTNEN
        D +E   CHYC+K   I+ F     +++   +N
Subjt:  D-KETKTCHYCNKSDRIKSFTTVGSKNKPTNEN

VFQ85667.1 unnamed protein product, partial [Cuscuta campestris]5.3e-2250Show/hide
Query:  RPAKS-----EKMEDIINKLTTMKIDFVDELQTLFLVKFFVRQLGNL----------GVLSLDVIKQNMFKEEIRRKEMGFDNSHALVVDNRGRNKSMGP
        +P KS        +DIINKLT MKI F DELQ LFL+         L          GVLSLDVIK++MF EE+RRKEMG D S ALVV+NRGR+KS GP
Subjt:  RPAKS-----EKMEDIINKLTTMKIDFVDELQTLFLVKFFVRQLGNL----------GVLSLDVIKQNMFKEEIRRKEMGFDNSHALVVDNRGRNKSMGP

Query:  KGHGNSKGRSESVD-KETKTCHYCNKSDRIKSFTTVGSKNKPTNEN
        KG G SK RS+S D +E   CHYC+K   I+ F     +++   +N
Subjt:  KGHGNSKGRSESVD-KETKTCHYCNKSDRIKSFTTVGSKNKPTNEN

TrEMBL top hitse value%identityAlignment
A0A3Q7IYG7 gag_pre-integrs domain-containing protein1.1e-2049.32Show/hide
Query:  RPAKS-----EKMEDIINKLTTMKIDFVDELQTLFLV-------KFFVRQLGNL---GVLSLDVIKQNMFKEEIRRKEMGFDNSHALVVDNRGRNKSMGP
        +P KS        +DIINKLT MKI   DELQ LFL+       +  V  + N    G LSLDVIK++MF EE+RRKEMG D S ALVV+NRGR+KS GP
Subjt:  RPAKS-----EKMEDIINKLTTMKIDFVDELQTLFLV-------KFFVRQLGNL---GVLSLDVIKQNMFKEEIRRKEMGFDNSHALVVDNRGRNKSMGP

Query:  KGHGNSKGRSESVD-KETKTCHYCNKSDRIKSFTTVGSKNKPTNEN
        KG G SK RS+S D +E   CHYC+K   I+ F     +++   +N
Subjt:  KGHGNSKGRSESVD-KETKTCHYCNKSDRIKSFTTVGSKNKPTNEN

A0A484KF92 Uncharacterized protein4.8e-2151.88Show/hide
Query:  EDIINKLTTMKIDFVDELQTLFLV-------KFFVRQLGNL---GVLSLDVIKQNMFKEEIRRKEMGFDNSHALVVDNRGRNKSMGPKGHGNSKGRSESV
        +DIINKLT MKI F DELQ LFL+       +  +  + N    GVLSLDVIK++MF EE+RRKEMG D S  LVV+NRGR+KS GPKG G SK RS+S 
Subjt:  EDIINKLTTMKIDFVDELQTLFLV-------KFFVRQLGNL---GVLSLDVIKQNMFKEEIRRKEMGFDNSHALVVDNRGRNKSMGPKGHGNSKGRSESV

Query:  D-KETKTCHYCNKSDRIKSFTTVGSKNKPTNEN
        D +E   CHYC+K   I+ F     +++   +N
Subjt:  D-KETKTCHYCNKSDRIKSFTTVGSKNKPTNEN

A0A484KMK1 Uncharacterized protein7.4e-2250.68Show/hide
Query:  RPAKS-----EKMEDIINKLTTMKIDFVDELQTLFLV-------KFFVRQLGNL---GVLSLDVIKQNMFKEEIRRKEMGFDNSHALVVDNRGRNKSMGP
        +P KS        +DIINKLT MKI F DELQ LFL+       +  V  + N    GVLSLDVIK++MF EE+RRKEMG D S ALVV+NRGR+KS GP
Subjt:  RPAKS-----EKMEDIINKLTTMKIDFVDELQTLFLV-------KFFVRQLGNL---GVLSLDVIKQNMFKEEIRRKEMGFDNSHALVVDNRGRNKSMGP

Query:  KGHGNSKGRSESVD-KETKTCHYCNKSDRIKSFTTVGSKNKPTNEN
        KG G SK RS+S D +E   CHYC+K   I+ F     +++   +N
Subjt:  KGHGNSKGRSESVD-KETKTCHYCNKSDRIKSFTTVGSKNKPTNEN

A0A484KYC9 Uncharacterized protein2.6e-2242.36Show/hide
Query:  RPAKS-----EKMEDIINKLTTMKIDFVDELQTLFLVKFF----------VRQLGNLGVLSLDVIKQNMFKEEIRRKEMGFDNSHALVVDNRGRNKSMGP
        +P KS        +DIINKLT MKI F DELQ LFL+             +    + GVLSLDVIK++MF EE+RRKEMG D S ALVV+NRGR+KS GP
Subjt:  RPAKS-----EKMEDIINKLTTMKIDFVDELQTLFLVKFF----------VRQLGNLGVLSLDVIKQNMFKEEIRRKEMGFDNSHALVVDNRGRNKSMGP

Query:  KGHGNSKGRSESVD-KETKTCHYCNKSDRIKSFTTVGSKNKPTNENI-----DDVH---------DDVGKIQHGGNVPEHVDDDDFDESSSNEQIVVVIL
        KG G SK RS+S D +E   CHYC+KS  I+ F     +++   +N      DD +         D V  +   G+   HVD+ D +       +++V L
Subjt:  KGHGNSKGRSESVD-KETKTCHYCNKSDRIKSFTTVGSKNKPTNENI-----DDVH---------DDVGKIQHGGNVPEHVDDDDFDESSSNEQIVVVIL

Query:  IVS
        I S
Subjt:  IVS

A0A484MAU4 Uncharacterized protein (Fragment)2.6e-2250Show/hide
Query:  RPAKS-----EKMEDIINKLTTMKIDFVDELQTLFLVKFFVRQLGNL----------GVLSLDVIKQNMFKEEIRRKEMGFDNSHALVVDNRGRNKSMGP
        +P KS        +DIINKLT MKI F DELQ LFL+         L          GVLSLDVIK++MF EE+RRKEMG D S ALVV+NRGR+KS GP
Subjt:  RPAKS-----EKMEDIINKLTTMKIDFVDELQTLFLVKFFVRQLGNL----------GVLSLDVIKQNMFKEEIRRKEMGFDNSHALVVDNRGRNKSMGP

Query:  KGHGNSKGRSESVD-KETKTCHYCNKSDRIKSFTTVGSKNKPTNEN
        KG G SK RS+S D +E   CHYC+K   I+ F     +++   +N
Subjt:  KGHGNSKGRSESVD-KETKTCHYCNKSDRIKSFTTVGSKNKPTNEN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACATTAACAAAGATAGTGCAAGTGCTGGAGATGAAGCCATTTTTAAGGCGTCGTTGAAAGACAAAGGGAGAGACAAGAATACGAAGGCTATTTTGGGTTGGAATGA
AATGGAAGTGCTAGAAATAGTGCATATATATAGGGTCGGAGCAAAGCAATATAATACACAGCCAGGGGTAAACGCTAAACTACCATTTTTTAGTTTAACACAGCCAAGGA
AAAAGAACAAAGATATGTGTGTGGATGAAGAAAACATAGAATTGATATTTTCTCGAAGGAATCTCCTTATCTCCGTAGTTATAGCAAATTTGTTTGCCGTCAGCAGTTTT
TGGGTTCTGCAGGCATATGCTATATTCATGAATGATCCATTGGCATGTGGTGCAAAGCCCTGCATCTCTATTATGGTTGAAGACATCAAACCAGTAGATTTGGTGTTGTC
CAATCCATACGAAGCTGCAACGTCGCCCCCACGAGTTTGTATAAGGACAAAAGAAACCAGTAACATTTTCTTTGGTTGGCATAAACTGGTCAATGCCCCAAGACCATACT
CGAGACGAATGAGATGCAGAAGAGTCCCTACGCATAGATATCACGTTCATAATTGGAGTATTAGGCAGATATTTGAGCAACCCAAGAATGGATCATTAGAAAGCAGCCAA
ACGAGTTATGAGACAGATGATGGAGATTTGTTGTATTGCAAAGATTTGTTTGATCCAATTGAAATAACCACAAAAGTTTATGGCACCATTTCTAGACCTGCAAAATCTGA
GAAAATGGAGGATATTATTAACAAACTGACTACTATGAAGATTGATTTTGTTGATGAATTGCAGACTTTGTTTCTTGTTAAGTTCTTTGTCAGACAGTTAGGAAACCTTG
GTGTTCTATCTTTGGATGTTATCAAACAAAACATGTTCAAAGAAGAGATAAGAAGAAAGGAGATGGGATTTGATAATTCACATGCTCTTGTTGTTGATAATCGTGGAAGA
AACAAGAGTATGGGACCCAAAGGCCATGGTAACTCAAAGGGGAGGTCCGAGTCTGTAGACAAAGAGACTAAGACATGTCATTACTGCAACAAGTCTGACCGTATAAAAAG
TTTTACTACCGTTGGAAGCAAGAACAAGCCGACAAATGAGAATATTGATGATGTACATGATGATGTTGGTAAGATACAACATGGTGGTAATGTACCAGAGCATGTTGATG
ATGATGATTTTGACGAGTCTTCATCTAATGAACAAATTGTGGTGGTAATATTGATAGTCAGTGGCGACCAGAAGTTAGAAATGAGAAAAGAAGAAAGATGGGGAGAGGGG
CAAGGGGCGAGGGGACAGGGAAAGGAGAGGCGTGGATTTGTTGGAAGCCAGAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGAACATTAACAAAGATAGTGCAAGTGCTGGAGATGAAGCCATTTTTAAGGCGTCGTTGAAAGACAAAGGGAGAGACAAGAATACGAAGGCTATTTTGGGTTGGAATGA
AATGGAAGTGCTAGAAATAGTGCATATATATAGGGTCGGAGCAAAGCAATATAATACACAGCCAGGGGTAAACGCTAAACTACCATTTTTTAGTTTAACACAGCCAAGGA
AAAAGAACAAAGATATGTGTGTGGATGAAGAAAACATAGAATTGATATTTTCTCGAAGGAATCTCCTTATCTCCGTAGTTATAGCAAATTTGTTTGCCGTCAGCAGTTTT
TGGGTTCTGCAGGCATATGCTATATTCATGAATGATCCATTGGCATGTGGTGCAAAGCCCTGCATCTCTATTATGGTTGAAGACATCAAACCAGTAGATTTGGTGTTGTC
CAATCCATACGAAGCTGCAACGTCGCCCCCACGAGTTTGTATAAGGACAAAAGAAACCAGTAACATTTTCTTTGGTTGGCATAAACTGGTCAATGCCCCAAGACCATACT
CGAGACGAATGAGATGCAGAAGAGTCCCTACGCATAGATATCACGTTCATAATTGGAGTATTAGGCAGATATTTGAGCAACCCAAGAATGGATCATTAGAAAGCAGCCAA
ACGAGTTATGAGACAGATGATGGAGATTTGTTGTATTGCAAAGATTTGTTTGATCCAATTGAAATAACCACAAAAGTTTATGGCACCATTTCTAGACCTGCAAAATCTGA
GAAAATGGAGGATATTATTAACAAACTGACTACTATGAAGATTGATTTTGTTGATGAATTGCAGACTTTGTTTCTTGTTAAGTTCTTTGTCAGACAGTTAGGAAACCTTG
GTGTTCTATCTTTGGATGTTATCAAACAAAACATGTTCAAAGAAGAGATAAGAAGAAAGGAGATGGGATTTGATAATTCACATGCTCTTGTTGTTGATAATCGTGGAAGA
AACAAGAGTATGGGACCCAAAGGCCATGGTAACTCAAAGGGGAGGTCCGAGTCTGTAGACAAAGAGACTAAGACATGTCATTACTGCAACAAGTCTGACCGTATAAAAAG
TTTTACTACCGTTGGAAGCAAGAACAAGCCGACAAATGAGAATATTGATGATGTACATGATGATGTTGGTAAGATACAACATGGTGGTAATGTACCAGAGCATGTTGATG
ATGATGATTTTGACGAGTCTTCATCTAATGAACAAATTGTGGTGGTAATATTGATAGTCAGTGGCGACCAGAAGTTAGAAATGAGAAAAGAAGAAAGATGGGGAGAGGGG
CAAGGGGCGAGGGGACAGGGAAAGGAGAGGCGTGGATTTGTTGGAAGCCAGAAATGA
Protein sequenceShow/hide protein sequence
MNINKDSASAGDEAIFKASLKDKGRDKNTKAILGWNEMEVLEIVHIYRVGAKQYNTQPGVNAKLPFFSLTQPRKKNKDMCVDEENIELIFSRRNLLISVVIANLFAVSSF
WVLQAYAIFMNDPLACGAKPCISIMVEDIKPVDLVLSNPYEAATSPPRVCIRTKETSNIFFGWHKLVNAPRPYSRRMRCRRVPTHRYHVHNWSIRQIFEQPKNGSLESSQ
TSYETDDGDLLYCKDLFDPIEITTKVYGTISRPAKSEKMEDIINKLTTMKIDFVDELQTLFLVKFFVRQLGNLGVLSLDVIKQNMFKEEIRRKEMGFDNSHALVVDNRGR
NKSMGPKGHGNSKGRSESVDKETKTCHYCNKSDRIKSFTTVGSKNKPTNENIDDVHDDVGKIQHGGNVPEHVDDDDFDESSSNEQIVVVILIVSGDQKLEMRKEERWGEG
QGARGQGKERRGFVGSQK