; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi06G008240 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi06G008240
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionTF-B3 domain-containing protein
Genome locationchr06:17452849..17475664
RNA-Seq ExpressionLsi06G008240
SyntenyLsi06G008240
Gene Ontology termsGO:0003677 - DNA binding (molecular function)
InterPro domainsIPR005508 - B3 domain-containing protein At2g31720-like
IPR015300 - DNA-binding pseudobarrel domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043114.1 putative B3 domain-containing protein [Cucumis melo var. makuwa]4.9e-4751.56Show/hide
Query:  YVLNSLYLRK-CFDSLHMKSKSVKQSEPSESTCRFKNQFPGSTSTSIVNEQPPAINEALP-----------------NNNNENVAPVGGGARD--RIWPM
        Y+ N+  ++K  +++     +  K SEP E      NQFP STS S+V++QPP +NE  P                 NNNNENVA V    RD  R+ PM
Subjt:  YVLNSLYLRK-CFDSLHMKSKSVKQSEPSESTCRFKNQFPGSTSTSIVNEQPPAINEALP-----------------NNNNENVAPVGGGARD--RIWPM

Query:  VVIENVIGACSRPFVKQLMKSDIW-ARGRLTLQKEFVNRHLVPMFNDDEDLIEGIDVIAFDSEGRQYDMTFELWTSKLY------KEFYQTN--KQSGEY
         VI+N+IG CS PFVKQL K+D+  ++GRL L KEFVNR+LVPMFN DE L  GI V  +DSEGR+YDMTF LWTSKLY      K+FY  N   +  E+
Subjt:  VVIENVIGACSRPFVKQLMKSDIW-ARGRLTLQKEFVNRHLVPMFNDDEDLIEGIDVIAFDSEGRQYDMTFELWTSKLY------KEFYQTN--KQSGEY

Query:  VTVWMFRHVVNHKLCFAIIQGRVEG
        +T+WMFRHVVNHKLCFAI++G VEG
Subjt:  VTVWMFRHVVNHKLCFAIIQGRVEG

KAG6589940.1 putative B3 domain-containing protein, partial [Cucurbita argyrosperma subsp. sororia]5.4e-3047.31Show/hide
Query:  EPSESTCRFKNQFPGSTSTSIVNEQPPAINEALPNNNNENVAPVGGGARDRIWPMV-----VIENVIGACSRPFVKQLMKSDI-WARGRLTLQKEFVNRH
        EPS S+     Q  GSTS  + +E     NEA   N +E+VA       + + P+V     VI N+IGA S P+ K+L KSD+   +GRL ++KEFV  H
Subjt:  EPSESTCRFKNQFPGSTSTSIVNEQPPAINEALPNNNNENVAPVGGGARDRIWPMV-----VIENVIGACSRPFVKQLMKSDI-WARGRLTLQKEFVNRH

Query:  LVPMFNDDEDLIEGIDVIAFDSEGRQYDMTFELWTSKLY------KEFYQTNK--QSGEYVTVWMFRHVVNHKLCFAIIQGRVEGP
        L+PMFN DED  EGIDV  ++ EGRQYDM F+LW SKLY       +FY+TN     G YVT+WMFRHV  HK+CFA+  G+   P
Subjt:  LVPMFNDDEDLIEGIDVIAFDSEGRQYDMTFELWTSKLY------KEFYQTNK--QSGEYVTVWMFRHVVNHKLCFAIIQGRVEGP

KAG7023605.1 putative B3 domain-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma]2.7e-2949.68Show/hide
Query:  NEALPNNNNENVAPVGGGARDRIWPMV-----VIENVIGACSRPFVKQLMKSDI-WARGRLTLQKEFVNRHLVPMFNDDEDLIEGIDVIAFDSEGRQYDM
        NEA   N +E+VA       + + P+V     VI N+IGA S P+ K+L KSD+   +GRL ++KEFV  HL+PMFN DED  EGIDV  ++ EGRQYDM
Subjt:  NEALPNNNNENVAPVGGGARDRIWPMV-----VIENVIGACSRPFVKQLMKSDI-WARGRLTLQKEFVNRHLVPMFNDDEDLIEGIDVIAFDSEGRQYDM

Query:  TFELWTSKLY------KEFYQTNK--QSGEYVTVWMFRHVVNHKLCFAIIQGRVEGP
         F+LW SKLY       +FY+TN   + G YVT+WMFRHV  HK+CFA+  G+   P
Subjt:  TFELWTSKLY------KEFYQTNK--QSGEYVTVWMFRHVVNHKLCFAIIQGRVEGP

KGN56101.1 hypothetical protein Csa_010492 [Cucumis sativus]3.0e-4457.07Show/hide
Query:  SKSVKQSEPSESTCRFKNQFPGSTSTSIVNEQ-------PPAINEALPNN-----NNENVAP--VGGGARDRIWPMVVIENVIGACSRPFVKQLMKSDIW
        SKSV+  E  E   RF NQ   STSTS+VNEQ        P +NE LPNN     NNENVA   V G  + R  PM VI+N+IG CS PFVKQL K+D+ 
Subjt:  SKSVKQSEPSESTCRFKNQFPGSTSTSIVNEQ-------PPAINEALPNN-----NNENVAP--VGGGARDRIWPMVVIENVIGACSRPFVKQLMKSDIW

Query:  -ARGRLTLQKEFVNRHLVPMFNDDEDLIEGIDVIAFDSEGRQYDMTFELWTSKLY------KEFYQTN--KQSGEYVTVWMFRHVVNHKLCFAIIQGR
          +GRL L KEFVN +L PMFNDDEDL +GI VI +D EGR+YDM F+LW SKLY      KEFY+TN   Q GE+++VWMFRHVV  KLCFAI++G+
Subjt:  -ARGRLTLQKEFVNRHLVPMFNDDEDLIEGIDVIAFDSEGRQYDMTFELWTSKLY------KEFYQTN--KQSGEYVTVWMFRHVVNHKLCFAIIQGR

XP_031736688.1 uncharacterized protein LOC116402065 [Cucumis sativus]9.2e-4650.89Show/hide
Query:  VLEAHQFEISNYVLNSLYLRKCFDSLHMK-SKSVKQSEPSESTCRFKNQFPGSTSTSIVNEQP-------PAINEALPNNNNENVA-PVGGGARDRIWPM
        ++E H +E S        L  C    HMK S+ +K  E  +   R  N+F  STS SI+N+QP       P +NEALPNNNNENVA  V G    R+ PM
Subjt:  VLEAHQFEISNYVLNSLYLRKCFDSLHMK-SKSVKQSEPSESTCRFKNQFPGSTSTSIVNEQP-------PAINEALPNNNNENVA-PVGGGARDRIWPM

Query:  VVIENVIGACSRPFVKQLMKSDIW-ARGRLTLQKEFVNRHLVPMFNDDEDLIEGIDVIAFDSEGRQYDMTFELWTSKLY------KEFYQTNK--QSGEY
         VI+N+IG CS PFVKQLMK+D+  ++GRL L KEFV R+L+PMFN  E+L  GI V  +DSEGR+YDM F+ WTSKLY       +FY++N   + GE+
Subjt:  VVIENVIGACSRPFVKQLMKSDIW-ARGRLTLQKEFVNRHLVPMFNDDEDLIEGIDVIAFDSEGRQYDMTFELWTSKLY------KEFYQTNK--QSGEY

Query:  VTVWMFRHVVNHKLCFAIIQGRVE
        ++VWMFRHVVN KLCFAI++G  E
Subjt:  VTVWMFRHVVNHKLCFAIIQGRVE

TrEMBL top hitse value%identityAlignment
A0A061FAT0 TF-B3 domain-containing protein1.8e-1842.5Show/hide
Query:  PMVVIENVIGACSRPFVKQLMKSDIWARG-RLTLQKEFVNRHLVPMFNDDEDLIEGIDVIAFDSEGRQYDMTFELWTSKLY-------KEFYQTNK-QSG
        P+  + ++IG CSRP+ KQL ++D+     RL+L K  V +  +P+  + ED+ +GI VI +D EG++Y M F  WTSK+Y       K FY+ +  +  
Subjt:  PMVVIENVIGACSRPFVKQLMKSDIWARG-RLTLQKEFVNRHLVPMFNDDEDLIEGIDVIAFDSEGRQYDMTFELWTSKLY-------KEFYQTNK-QSG

Query:  EYVTVWMFRHVVNHKLCFAI
        + VTVWMFRH   H LCFAI
Subjt:  EYVTVWMFRHVVNHKLCFAI

A0A0A0L7L0 TF-B3 domain-containing protein1.4e-4457.07Show/hide
Query:  SKSVKQSEPSESTCRFKNQFPGSTSTSIVNEQ-------PPAINEALPNN-----NNENVAP--VGGGARDRIWPMVVIENVIGACSRPFVKQLMKSDIW
        SKSV+  E  E   RF NQ   STSTS+VNEQ        P +NE LPNN     NNENVA   V G  + R  PM VI+N+IG CS PFVKQL K+D+ 
Subjt:  SKSVKQSEPSESTCRFKNQFPGSTSTSIVNEQ-------PPAINEALPNN-----NNENVAP--VGGGARDRIWPMVVIENVIGACSRPFVKQLMKSDIW

Query:  -ARGRLTLQKEFVNRHLVPMFNDDEDLIEGIDVIAFDSEGRQYDMTFELWTSKLY------KEFYQTN--KQSGEYVTVWMFRHVVNHKLCFAIIQGR
          +GRL L KEFVN +L PMFNDDEDL +GI VI +D EGR+YDM F+LW SKLY      KEFY+TN   Q GE+++VWMFRHVV  KLCFAI++G+
Subjt:  -ARGRLTLQKEFVNRHLVPMFNDDEDLIEGIDVIAFDSEGRQYDMTFELWTSKLY------KEFYQTN--KQSGEYVTVWMFRHVVNHKLCFAIIQGR

A0A0A0LC65 TF-B3 domain-containing protein9.6e-3358.4Show/hide
Query:  MVVIENVIGACSRPFVKQLMKSDIW-ARGRLTLQKEFVNRHLVPMFNDDEDLIEGIDVIAFDSEGRQYDMTFELWTSKLY------KEFYQTNK--QSGE
        M VI+N+IG CS PFVKQLMK+D+  ++GRL L KEFV R+L+PMFN  E+L  GI V  +DSEGR+YDM F+ WTSKLY       +FY++N   + GE
Subjt:  MVVIENVIGACSRPFVKQLMKSDIW-ARGRLTLQKEFVNRHLVPMFNDDEDLIEGIDVIAFDSEGRQYDMTFELWTSKLY------KEFYQTNK--QSGE

Query:  YVTVWMFRHVVNHKLCFAIIQGRVE
        +++VWMFRHVVN KLCFAI++G  E
Subjt:  YVTVWMFRHVVNHKLCFAIIQGRVE

A0A5D3BAS8 Putative B3 domain-containing protein2.4e-4751.56Show/hide
Query:  YVLNSLYLRK-CFDSLHMKSKSVKQSEPSESTCRFKNQFPGSTSTSIVNEQPPAINEALP-----------------NNNNENVAPVGGGARD--RIWPM
        Y+ N+  ++K  +++     +  K SEP E      NQFP STS S+V++QPP +NE  P                 NNNNENVA V    RD  R+ PM
Subjt:  YVLNSLYLRK-CFDSLHMKSKSVKQSEPSESTCRFKNQFPGSTSTSIVNEQPPAINEALP-----------------NNNNENVAPVGGGARD--RIWPM

Query:  VVIENVIGACSRPFVKQLMKSDIW-ARGRLTLQKEFVNRHLVPMFNDDEDLIEGIDVIAFDSEGRQYDMTFELWTSKLY------KEFYQTN--KQSGEY
         VI+N+IG CS PFVKQL K+D+  ++GRL L KEFVNR+LVPMFN DE L  GI V  +DSEGR+YDMTF LWTSKLY      K+FY  N   +  E+
Subjt:  VVIENVIGACSRPFVKQLMKSDIW-ARGRLTLQKEFVNRHLVPMFNDDEDLIEGIDVIAFDSEGRQYDMTFELWTSKLY------KEFYQTN--KQSGEY

Query:  VTVWMFRHVVNHKLCFAIIQGRVEG
        +T+WMFRHVVNHKLCFAI++G VEG
Subjt:  VTVWMFRHVVNHKLCFAIIQGRVEG

A0A6J1CTE7 putative B3 domain-containing protein At4g031701.3e-2443.45Show/hide
Query:  PGSTSTSIVNEQPPAINEALPNNNNENVAPVGGGARDRIWPMVVIENVIGACSRPFVKQLMKSDI-WARGRLTLQKEFVNRHLVPMFN---DDEDLIEGI
        P S+    VN++ P      PNNNN+      G  R  + P+  I +VIG CSR + K+L  SD+  A+GRL + KEFV ++L PMFN   ++E+L EGI
Subjt:  PGSTSTSIVNEQPPAINEALPNNNNENVAPVGGGARDRIWPMVVIENVIGACSRPFVKQLMKSDI-WARGRLTLQKEFVNRHLVPMFN---DDEDLIEGI

Query:  DVIAFDSEGRQYDMTFELWTSKLY------KEFYQTNK----QSGEYVTVWMFRHVVNHKLCFAIIQG
        +V  ++ EGR++ MTF++W SKLY      K F + N      +GE++T+WMFRH   H LCFAII G
Subjt:  DVIAFDSEGRQYDMTFELWTSKLY------KEFYQTNK----QSGEYVTVWMFRHVVNHKLCFAIIQG

SwissProt top hitse value%identityAlignment
Q9LM90 B3 domain-containing protein At1g206003.3e-0639.06Show/hide
Query:  SRPFVKQLMKSDI-WARGRLTLQKEFVNRHLVPMFNDDEDLIEGIDVIAFDSEGRQYDMTFELW
        SRP  KQLM SD+   + RL L KE V   ++P   + ED ++G+DV  +  +G    M F++W
Subjt:  SRPFVKQLMKSDI-WARGRLTLQKEFVNRHLVPMFNDDEDLIEGIDVIAFDSEGRQYDMTFELW

Q9ZR14 Putative B3 domain-containing protein At4g031701.4e-1237.61Show/hide
Query:  SRPFVKQLMKSDI-WARGRLTLQKEFVNRHLVPMFNDDEDLIEGIDVIAFDSEGRQYDMTFELWT-------SKLYKEFYQTN--KQSGEYVTVWMFRHV
        SRP  KQLM SD+   +  L L KE V   ++P   D E+ ++GIDV  +  +G+   M F++W        +  +K+F +      + ++VTVWMFRH+
Subjt:  SRPFVKQLMKSDI-WARGRLTLQKEFVNRHLVPMFNDDEDLIEGIDVIAFDSEGRQYDMTFELWT-------SKLYKEFYQTN--KQSGEYVTVWMFRHV

Query:  VNHKLCFAI
           KLCFAI
Subjt:  VNHKLCFAI

Q9ZR15 Putative B3 domain-containing protein At4g031601.4e-0428.04Show/hide
Query:  RPFVKQLMKSDIW-ARGRLTLQKEFVNRHLVPMFNDDEDLIEGIDVIAFDSEGRQYDMTFELW------TSKLYKEFYQTNK--QSGEYVTVWMFRHVVN
        R   +QLM SD+   + RL L KE V + +  +   ++   +G++V  +   G  + M  ++W       +  +K F ++ K  +  +++T+WMFRH   
Subjt:  RPFVKQLMKSDIW-ARGRLTLQKEFVNRHLVPMFNDDEDLIEGIDVIAFDSEGRQYDMTFELW------TSKLYKEFYQTNK--QSGEYVTVWMFRHVVN

Query:  HKLCFAI
         ++CFAI
Subjt:  HKLCFAI

Arabidopsis top hitse value%identityAlignment
AT1G20600.1 AP2/B3-like transcriptional factor family protein2.4e-0739.06Show/hide
Query:  SRPFVKQLMKSDI-WARGRLTLQKEFVNRHLVPMFNDDEDLIEGIDVIAFDSEGRQYDMTFELW
        SRP  KQLM SD+   + RL L KE V   ++P   + ED ++G+DV  +  +G    M F++W
Subjt:  SRPFVKQLMKSDI-WARGRLTLQKEFVNRHLVPMFNDDEDLIEGIDVIAFDSEGRQYDMTFELW

AT4G03160.1 BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT4G03170.1)9.9e-0628.04Show/hide
Query:  RPFVKQLMKSDIW-ARGRLTLQKEFVNRHLVPMFNDDEDLIEGIDVIAFDSEGRQYDMTFELW------TSKLYKEFYQTNK--QSGEYVTVWMFRHVVN
        R   +QLM SD+   + RL L KE V + +  +   ++   +G++V  +   G  + M  ++W       +  +K F ++ K  +  +++T+WMFRH   
Subjt:  RPFVKQLMKSDIW-ARGRLTLQKEFVNRHLVPMFNDDEDLIEGIDVIAFDSEGRQYDMTFELW------TSKLYKEFYQTNK--QSGEYVTVWMFRHVVN

Query:  HKLCFAI
         ++CFAI
Subjt:  HKLCFAI

AT4G03170.1 AP2/B3-like transcriptional factor family protein9.9e-1437.61Show/hide
Query:  SRPFVKQLMKSDI-WARGRLTLQKEFVNRHLVPMFNDDEDLIEGIDVIAFDSEGRQYDMTFELWT-------SKLYKEFYQTN--KQSGEYVTVWMFRHV
        SRP  KQLM SD+   +  L L KE V   ++P   D E+ ++GIDV  +  +G+   M F++W        +  +K+F +      + ++VTVWMFRH+
Subjt:  SRPFVKQLMKSDI-WARGRLTLQKEFVNRHLVPMFNDDEDLIEGIDVIAFDSEGRQYDMTFELWT-------SKLYKEFYQTN--KQSGEYVTVWMFRHV

Query:  VNHKLCFAI
           KLCFAI
Subjt:  VNHKLCFAI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GCATTCGGATTAGTTTTAGAAGCACATCAGTTCGAGATTTCTAATTATGTCTTAAACTCTTTATATCTACGAAAATGCTTTGATTCTTTGCACATGAAAAGTAAAAGCGT
GAAGCAATCTGAGCCGTCAGAGTCGACATGTCGTTTCAAAAATCAATTTCCAGGTTCAACTTCTACTTCCATAGTAAACGAGCAACCTCCTGCAATCAACGAAGCTCTAC
CTAATAACAACAATGAAAATGTGGCACCGGTGGGCGGTGGAGCTCGAGATAGAATTTGGCCGATGGTAGTGATCGAAAACGTAATCGGAGCATGCAGTCGGCCATTTGTG
AAGCAATTAATGAAAAGCGACATATGGGCTAGAGGGCGATTGACACTTCAAAAGGAATTTGTGAATCGTCATTTGGTTCCAATGTTCAATGATGATGAGGATCTGATTGA
GGGGATTGATGTTATAGCTTTTGATAGTGAAGGGAGACAATACGACATGACGTTCGAGCTTTGGACTTCTAAGCTTTATAAGGAGTTTTACCAGACCAATAAGCAATCTG
GTGAGTATGTCACTGTTTGGATGTTCCGACATGTCGTCAATCACAAGCTTTGCTTTGCTATCATTCAAGGAAGGGTTGAAGGGCCT
mRNA sequenceShow/hide mRNA sequence
GCATTCGGATTAGTTTTAGAAGCACATCAGTTCGAGATTTCTAATTATGTCTTAAACTCTTTATATCTACGAAAATGCTTTGATTCTTTGCACATGAAAAGTAAAAGCGT
GAAGCAATCTGAGCCGTCAGAGTCGACATGTCGTTTCAAAAATCAATTTCCAGGTTCAACTTCTACTTCCATAGTAAACGAGCAACCTCCTGCAATCAACGAAGCTCTAC
CTAATAACAACAATGAAAATGTGGCACCGGTGGGCGGTGGAGCTCGAGATAGAATTTGGCCGATGGTAGTGATCGAAAACGTAATCGGAGCATGCAGTCGGCCATTTGTG
AAGCAATTAATGAAAAGCGACATATGGGCTAGAGGGCGATTGACACTTCAAAAGGAATTTGTGAATCGTCATTTGGTTCCAATGTTCAATGATGATGAGGATCTGATTGA
GGGGATTGATGTTATAGCTTTTGATAGTGAAGGGAGACAATACGACATGACGTTCGAGCTTTGGACTTCTAAGCTTTATAAGGAGTTTTACCAGACCAATAAGCAATCTG
GTGAGTATGTCACTGTTTGGATGTTCCGACATGTCGTCAATCACAAGCTTTGCTTTGCTATCATTCAAGGAAGGGTTGAAGGGCCT
Protein sequenceShow/hide protein sequence
AFGLVLEAHQFEISNYVLNSLYLRKCFDSLHMKSKSVKQSEPSESTCRFKNQFPGSTSTSIVNEQPPAINEALPNNNNENVAPVGGGARDRIWPMVVIENVIGACSRPFV
KQLMKSDIWARGRLTLQKEFVNRHLVPMFNDDEDLIEGIDVIAFDSEGRQYDMTFELWTSKLYKEFYQTNKQSGEYVTVWMFRHVVNHKLCFAIIQGRVEGP