; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi06G008310 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi06G008310
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionTF-B3 domain-containing protein
Genome locationchr06:17619256..17622513
RNA-Seq ExpressionLsi06G008310
SyntenyLsi06G008310
Gene Ontology termsGO:0003677 - DNA binding (molecular function)
InterPro domainsIPR003340 - B3 DNA binding domain
IPR005508 - B3 domain-containing protein At2g31720-like
IPR015300 - DNA-binding pseudobarrel domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043114.1 putative B3 domain-containing protein [Cucumis melo var. makuwa]1.7e-1940.35Show/hide
Query:  PEDIGNQFPGLTSTS-----TSIVNEQP-------------LKLNDNENATLELAEFGGAPTIIMPPMPAIVNIIKTCSPLFSKQMTKADLADGQGRLTL
        P +  NQFP  TS S       +VNEQP             L  N+N N     A         +PPM  I NII  CSP F KQ+TK D+ D QGRL L
Subjt:  PEDIGNQFPGLTSTS-----TSIVNEQP-------------LKLNDNENATLELAEFGGAPTIIMPPMPAIVNIIKTCSPLFSKQMTKADLADGQGRLTL

Query:  KKNF--------------------------ERREYDMTFKVWTSKFYVLMKGWKEFYKTNNLTQPGEYITI
         K F                          E REYDMTF++WTSK YVL K WK+FY  N LT+P E+IT+
Subjt:  KKNF--------------------------ERREYDMTFKVWTSKFYVLMKGWKEFYKTNNLTQPGEYITI

KAG6589940.1 putative B3 domain-containing protein, partial [Cucurbita argyrosperma subsp. sororia]6.3e-1938.06Show/hide
Query:  PPEDIGNQFPGLTSTSTSIVNEQPLKLNDNENATLELAEFGG-APTIIMPPMPAIVNIIKTCSPLFSKQMTKADLADGQGRLTLKKNF------------
        P      Q  G TS      NE P  +N +E+  LE+ E       +++P +  I+NII   SP + K++TK+D+++GQGRL ++K F            
Subjt:  PPEDIGNQFPGLTSTSTSIVNEQPLKLNDNENATLELAEFGG-APTIIMPPMPAIVNIIKTCSPLFSKQMTKADLADGQGRLTLKKNF------------

Query:  --------------ERREYDMTFKVWTSKFYVLMKGWKEFYKTNNLTQPGEYITI
                      E R+YDM FK+W SK YVL KGW +FYKTNNLT PG Y+T+
Subjt:  --------------ERREYDMTFKVWTSKFYVLMKGWKEFYKTNNLTQPGEYITI

KAG7023605.1 putative B3 domain-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma]4.1e-1840Show/hide
Query:  NEQPLKLNDNENATLELAEFGG-APTIIMPPMPAIVNIIKTCSPLFSKQMTKADLADGQGRLTLKKNF--------------------------ERREYD
        NE P  +N +E+  LE+ E       +++P +  I+NII   SP + K++TK+D+++GQGRL ++K F                          E R+YD
Subjt:  NEQPLKLNDNENATLELAEFGG-APTIIMPPMPAIVNIIKTCSPLFSKQMTKADLADGQGRLTLKKNF--------------------------ERREYD

Query:  MTFKVWTSKFYVLMKGWKEFYKTNNLTQPGEYITI
        M FK+W SK YVL KGW +FYKTNNLT+PG Y+T+
Subjt:  MTFKVWTSKFYVLMKGWKEFYKTNNLTQPGEYITI

KGN56101.1 hypothetical protein Csa_010492 [Cucumis sativus]8.0e-2243.53Show/hide
Query:  PPEDIGNQFPGLTSTSTSIVNEQP-------------LKLNDNENATLE---LAEFGGAPTIIMPPMPAIVNIIKTCSPLFSKQMTKADLADGQGRLTLK
        P +   NQ   L+STSTS+VNEQ              L  ND++N   E    A   G      PPM  I NII  CSP F KQ+TK D+ D QGRL L 
Subjt:  PPEDIGNQFPGLTSTSTSIVNEQP-------------LKLNDNENATLE---LAEFGGAPTIIMPPMPAIVNIIKTCSPLFSKQMTKADLADGQGRLTLK

Query:  KNF--------------------------ERREYDMTFKVWTSKFYVLMKGWKEFYKTNNLTQPGEYITI
        K F                          E REYDM FK+W SK YVL K WKEFYKTN+LTQPGE+I++
Subjt:  KNF--------------------------ERREYDMTFKVWTSKFYVLMKGWKEFYKTNNLTQPGEYITI

XP_031736688.1 uncharacterized protein LOC116402065 [Cucumis sativus]7.5e-2040.72Show/hide
Query:  PPEDIGNQFPGLTSTSTSIVNEQP-------------LKLNDNENATLELAEFGGAPTIIMPPMPAIVNIIKTCSPLFSKQMTKADLADGQGRLTLKKNF
        P   + N+F   +STS SI+N+QP             L  N+NEN  + +A   G     +PPM  I NII  CSP F KQ+ K D+ + QGRL L K F
Subjt:  PPEDIGNQFPGLTSTSTSIVNEQP-------------LKLNDNENATLELAEFGGAPTIIMPPMPAIVNIIKTCSPLFSKQMTKADLADGQGRLTLKKNF

Query:  --------------------------ERREYDMTFKVWTSKFYVLMKGWKEFYKTNNLTQPGEYITI
                                  E REYDM FK WTSK YVL K W +FYK+NNLT+PGE+I++
Subjt:  --------------------------ERREYDMTFKVWTSKFYVLMKGWKEFYKTNNLTQPGEYITI

TrEMBL top hitse value%identityAlignment
A0A067L9U6 TF-B3 domain-containing protein7.6e-1029.47Show/hide
Query:  MSSRFVEHMDTAARLPPEDIGNQFPGLTSTSTSIVNEQPLKLNDNENATLELAEFGGAPTIIMPPMPAIVNIIKTCSPLFSKQMTKADLADGQGRLTLKK
        M S F+ H  ++    P+     FPG    S +I+ +    L     + L+L      P  I PP+  +   I  CS  F KQ+T +D+   Q RLTL K
Subjt:  MSSRFVEHMDTAARLPPEDIGNQFPGLTSTSTSIVNEQPLKLNDNENATLELAEFGGAPTIIMPPMPAIVNIIKTCSPLFSKQMTKADLADGQGRLTLKK

Query:  NF---------------------------ERREYDMTFKVWTSKFYVLMKGWKEFYKTNNLTQPGEYITILIDVAINFSGYVFSFNDRGL
         +                           E  EY MT K+W SK YVLM GWKEFY+   L +  +++T      +    + F+ N R L
Subjt:  NF---------------------------ERREYDMTFKVWTSKFYVLMKGWKEFYKTNNLTQPGEYITILIDVAINFSGYVFSFNDRGL

A0A0A0L7L0 TF-B3 domain-containing protein3.9e-2243.53Show/hide
Query:  PPEDIGNQFPGLTSTSTSIVNEQP-------------LKLNDNENATLE---LAEFGGAPTIIMPPMPAIVNIIKTCSPLFSKQMTKADLADGQGRLTLK
        P +   NQ   L+STSTS+VNEQ              L  ND++N   E    A   G      PPM  I NII  CSP F KQ+TK D+ D QGRL L 
Subjt:  PPEDIGNQFPGLTSTSTSIVNEQP-------------LKLNDNENATLE---LAEFGGAPTIIMPPMPAIVNIIKTCSPLFSKQMTKADLADGQGRLTLK

Query:  KNF--------------------------ERREYDMTFKVWTSKFYVLMKGWKEFYKTNNLTQPGEYITI
        K F                          E REYDM FK+W SK YVL K WKEFYKTN+LTQPGE+I++
Subjt:  KNF--------------------------ERREYDMTFKVWTSKFYVLMKGWKEFYKTNNLTQPGEYITI

A0A0A0LC65 TF-B3 domain-containing protein3.5e-1546.15Show/hide
Query:  MPAIVNIIKTCSPLFSKQMTKADLADGQGRLTLKKNF--------------------------ERREYDMTFKVWTSKFYVLMKGWKEFYKTNNLTQPGE
        M  I NII  CSP F KQ+ K D+ + QGRL L K F                          E REYDM FK WTSK YVL K W +FYK+NNLT+PGE
Subjt:  MPAIVNIIKTCSPLFSKQMTKADLADGQGRLTLKKNF--------------------------ERREYDMTFKVWTSKFYVLMKGWKEFYKTNNLTQPGE

Query:  YITI
        +I++
Subjt:  YITI

A0A5D3BAS8 Putative B3 domain-containing protein8.1e-2040.35Show/hide
Query:  PEDIGNQFPGLTSTS-----TSIVNEQP-------------LKLNDNENATLELAEFGGAPTIIMPPMPAIVNIIKTCSPLFSKQMTKADLADGQGRLTL
        P +  NQFP  TS S       +VNEQP             L  N+N N     A         +PPM  I NII  CSP F KQ+TK D+ D QGRL L
Subjt:  PEDIGNQFPGLTSTS-----TSIVNEQP-------------LKLNDNENATLELAEFGGAPTIIMPPMPAIVNIIKTCSPLFSKQMTKADLADGQGRLTL

Query:  KKNF--------------------------ERREYDMTFKVWTSKFYVLMKGWKEFYKTNNLTQPGEYITI
         K F                          E REYDMTF++WTSK YVL K WK+FY  N LT+P E+IT+
Subjt:  KKNF--------------------------ERREYDMTFKVWTSKFYVLMKGWKEFYKTNNLTQPGEYITI

A0A6J1CTE7 putative B3 domain-containing protein At4g031702.5e-1341.07Show/hide
Query:  MPPMPAIVNIIKTCSPLFSKQMTKADLADGQGRLTLKKNF-----------------------------ERREYDMTFKVWTSKFYVLMKGWKEFYKTNN
        MPP+PAI ++I  CS  + K++T +D+A+ QGRL + K F                             E RE+ MTFK+W SK YVLMKGWK F K NN
Subjt:  MPPMPAIVNIIKTCSPLFSKQMTKADLADGQGRLTLKKNF-----------------------------ERREYDMTFKVWTSKFYVLMKGWKEFYKTNN

Query:  LT--QPGEYITI
        LT    GE++T+
Subjt:  LT--QPGEYITI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTAAGTTTTTGCCATTGTCGCCCGTCCCCGACGCCTTCTCTACCATGAGCAGCCGTTTCGTTGAGCACATGGACACTGCCGCCAGACTGCCACCAGAAGATATAGG
AAATCAATTTCCAGGTTTAACTTCAACTTCCACTTCCATAGTCAACGAACAACCTCTCAAACTCAACGACAATGAAAATGCAACCTTGGAGTTGGCGGAATTTGGTGGAG
CTCCCACGATAATAATGCCACCGATGCCGGCGATCGTGAACATAATCAAAACGTGTAGCCCACTGTTTTCGAAGCAAATGACAAAAGCTGACTTGGCAGATGGACAAGGG
CGATTGACACTTAAAAAAAATTTTGAACGAAGAGAATACGACATGACGTTCAAGGTTTGGACTTCTAAATTTTATGTGCTCATGAAAGGTTGGAAGGAGTTTTACAAGAC
CAATAATTTAACTCAACCTGGTGAATACATCACCATTTTAATTGATGTAGCCATTAATTTCAGTGGTTACGTATTTTCCTTTAATGATAGAGGTTTAAATTCAATCACTT
AA
mRNA sequenceShow/hide mRNA sequence
ATGGTTAAGTTTTTGCCATTGTCGCCCGTCCCCGACGCCTTCTCTACCATGAGCAGCCGTTTCGTTGAGCACATGGACACTGCCGCCAGACTGCCACCAGAAGATATAGG
AAATCAATTTCCAGGTTTAACTTCAACTTCCACTTCCATAGTCAACGAACAACCTCTCAAACTCAACGACAATGAAAATGCAACCTTGGAGTTGGCGGAATTTGGTGGAG
CTCCCACGATAATAATGCCACCGATGCCGGCGATCGTGAACATAATCAAAACGTGTAGCCCACTGTTTTCGAAGCAAATGACAAAAGCTGACTTGGCAGATGGACAAGGG
CGATTGACACTTAAAAAAAATTTTGAACGAAGAGAATACGACATGACGTTCAAGGTTTGGACTTCTAAATTTTATGTGCTCATGAAAGGTTGGAAGGAGTTTTACAAGAC
CAATAATTTAACTCAACCTGGTGAATACATCACCATTTTAATTGATGTAGCCATTAATTTCAGTGGTTACGTATTTTCCTTTAATGATAGAGGTTTAAATTCAATCACTT
AA
Protein sequenceShow/hide protein sequence
MVKFLPLSPVPDAFSTMSSRFVEHMDTAARLPPEDIGNQFPGLTSTSTSIVNEQPLKLNDNENATLELAEFGGAPTIIMPPMPAIVNIIKTCSPLFSKQMTKADLADGQG
RLTLKKNFERREYDMTFKVWTSKFYVLMKGWKEFYKTNNLTQPGEYITILIDVAINFSGYVFSFNDRGLNSIT