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Lsi06G008460 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi06G008460
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionAuxin-responsive protein
Genome locationchr06:17819143..17821667
RNA-Seq ExpressionLsi06G008460
SyntenyLsi06G008460
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0009734 - auxin-activated signaling pathway (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR000270 - PB1 domain
IPR003311 - AUX/IAA protein
IPR033389 - AUX/IAA domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6589929.1 Auxin-responsive protein IAA27, partial [Cucurbita argyrosperma subsp. sororia]7.2e-3997.5Show/hide
Query:  GHCGSNGVPNRDALNESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCTRMRIMKSSEAIGLAPRAMEKCKNRN
        GHCGSNG PNRDALNESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCTRMRIMKSSEAIGLAPRAMEKC+NRN
Subjt:  GHCGSNGVPNRDALNESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCTRMRIMKSSEAIGLAPRAMEKCKNRN

TYJ98063.1 auxin-responsive protein IAA27 [Cucumis melo var. makuwa]8.5e-40100Show/hide
Query:  GHCGSNGVPNRDALNESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCTRMRIMKSSEAIGLAPRAMEKCKNRN
        GHCGSNGVPNRDALNESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCTRMRIMKSSEAIGLAPRAMEKCKNRN
Subjt:  GHCGSNGVPNRDALNESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCTRMRIMKSSEAIGLAPRAMEKCKNRN

XP_008462746.1 PREDICTED: auxin-responsive protein IAA27 [Cucumis melo]8.5e-40100Show/hide
Query:  GHCGSNGVPNRDALNESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCTRMRIMKSSEAIGLAPRAMEKCKNRN
        GHCGSNGVPNRDALNESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCTRMRIMKSSEAIGLAPRAMEKCKNRN
Subjt:  GHCGSNGVPNRDALNESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCTRMRIMKSSEAIGLAPRAMEKCKNRN

XP_022144958.1 auxin-responsive protein IAA27-like [Momordica charantia]4.2e-3998.75Show/hide
Query:  GHCGSNGVPNRDALNESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCTRMRIMKSSEAIGLAPRAMEKCKNRN
        GHCGSNGVPNRDALNESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCTRMRIMKSSEAIGLAPRAM KCKNRN
Subjt:  GHCGSNGVPNRDALNESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCTRMRIMKSSEAIGLAPRAMEKCKNRN

XP_038879206.1 auxin-responsive protein IAA27 [Benincasa hispida]8.5e-40100Show/hide
Query:  GHCGSNGVPNRDALNESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCTRMRIMKSSEAIGLAPRAMEKCKNRN
        GHCGSNGVPNRDALNESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCTRMRIMKSSEAIGLAPRAMEKCKNRN
Subjt:  GHCGSNGVPNRDALNESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCTRMRIMKSSEAIGLAPRAMEKCKNRN

TrEMBL top hitse value%identityAlignment
A0A1S3CHQ1 Auxin-responsive protein4.1e-40100Show/hide
Query:  GHCGSNGVPNRDALNESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCTRMRIMKSSEAIGLAPRAMEKCKNRN
        GHCGSNGVPNRDALNESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCTRMRIMKSSEAIGLAPRAMEKCKNRN
Subjt:  GHCGSNGVPNRDALNESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCTRMRIMKSSEAIGLAPRAMEKCKNRN

A0A5D3BFM3 Auxin-responsive protein4.1e-40100Show/hide
Query:  GHCGSNGVPNRDALNESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCTRMRIMKSSEAIGLAPRAMEKCKNRN
        GHCGSNGVPNRDALNESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCTRMRIMKSSEAIGLAPRAMEKCKNRN
Subjt:  GHCGSNGVPNRDALNESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCTRMRIMKSSEAIGLAPRAMEKCKNRN

A0A6J1CTT1 Auxin-responsive protein2.0e-3998.75Show/hide
Query:  GHCGSNGVPNRDALNESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCTRMRIMKSSEAIGLAPRAMEKCKNRN
        GHCGSNGVPNRDALNESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCTRMRIMKSSEAIGLAPRAM KCKNRN
Subjt:  GHCGSNGVPNRDALNESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCTRMRIMKSSEAIGLAPRAMEKCKNRN

A0A6J1HA29 Auxin-responsive protein3.5e-3997.5Show/hide
Query:  GHCGSNGVPNRDALNESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCTRMRIMKSSEAIGLAPRAMEKCKNRN
        GHCGSNG PNRDALNESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCTRMRIMKSSEAIGLAPRAMEKC+NRN
Subjt:  GHCGSNGVPNRDALNESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCTRMRIMKSSEAIGLAPRAMEKCKNRN

A0A6J1JBD0 Auxin-responsive protein3.5e-3997.5Show/hide
Query:  GHCGSNGVPNRDALNESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCTRMRIMKSSEAIGLAPRAMEKCKNRN
        GHCGSNG PNRDALNESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCTRMRIMKSSEAIGLAPRAMEKC+NRN
Subjt:  GHCGSNGVPNRDALNESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCTRMRIMKSSEAIGLAPRAMEKCKNRN

SwissProt top hitse value%identityAlignment
O24407 Auxin-responsive protein IAA162.0e-2872.5Show/hide
Query:  GHCGSNGVPNRDALNESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCTRMRIMKSSEAIGLAPRAMEKCKNRN
        G+ G  G+  +D +NES+L+DLL+GS+YV TYEDKDGDWMLVGDVPWEMF +SC R+RIMK SEAIGLAPRA+EKCKNR+
Subjt:  GHCGSNGVPNRDALNESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCTRMRIMKSSEAIGLAPRAMEKCKNRN

P0C132 Auxin-responsive protein IAA309.8e-3177.5Show/hide
Query:  GHCGSNGVPNRDALNESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCTRMRIMKSSEAIGLAPRAMEKCKNRN
        G+CGS+GV   + +NES++ DLL+GSEYV TYEDKDGDWMLVGDVPWEMF ESC R+RIMK SEAIGLAPRAMEKCKNR+
Subjt:  GHCGSNGVPNRDALNESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCTRMRIMKSSEAIGLAPRAMEKCKNRN

Q38826 Auxin-responsive protein IAA83.8e-2765.82Show/hide
Query:  GHCGSNGVPNRDALNESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCTRMRIMKSSEAIGLAPRAMEKCKNR
        G CG +G   R+ ++E +L DLLHGSE+VLTYEDKDGDWMLVGDVPWE+FTE+C +++IMK S++IGLAP A+EK KN+
Subjt:  GHCGSNGVPNRDALNESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCTRMRIMKSSEAIGLAPRAMEKCKNR

Q5Z749 Auxin-responsive protein IAA212.9e-2770Show/hide
Query:  GHCGSNGVPNRDALNESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCTRMRIMKSSEAIGLAPRAMEKCKNRN
        GH  SNG   RD L++ RLMDL +G+E VLTYEDKD DWMLVGDVPW MFT+SC R+RIMK S+A+GLAPRA +K KNRN
Subjt:  GHCGSNGVPNRDALNESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCTRMRIMKSSEAIGLAPRAMEKCKNRN

Q9ZSY8 Auxin-responsive protein IAA271.4e-2976.25Show/hide
Query:  GHCGSNGVPNRDALNESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCTRMRIMKSSEAIGLAPRAMEKCKNRN
        G  GS+G   RD LNESRL DLL GSEYV+TYEDKD DWMLVGDVPWEMF  SC ++RIMKSSEAIGLAPR MEKC++RN
Subjt:  GHCGSNGVPNRDALNESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCTRMRIMKSSEAIGLAPRAMEKCKNRN

Arabidopsis top hitse value%identityAlignment
AT2G22670.1 indoleacetic acid-induced protein 82.7e-2865.82Show/hide
Query:  GHCGSNGVPNRDALNESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCTRMRIMKSSEAIGLAPRAMEKCKNR
        G CG +G   R+ ++E +L DLLHGSE+VLTYEDKDGDWMLVGDVPWE+FTE+C +++IMK S++IGLAP A+EK KN+
Subjt:  GHCGSNGVPNRDALNESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCTRMRIMKSSEAIGLAPRAMEKCKNR

AT2G22670.3 indoleacetic acid-induced protein 82.7e-2865.82Show/hide
Query:  GHCGSNGVPNRDALNESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCTRMRIMKSSEAIGLAPRAMEKCKNR
        G CG +G   R+ ++E +L DLLHGSE+VLTYEDKDGDWMLVGDVPWE+FTE+C +++IMK S++IGLAP A+EK KN+
Subjt:  GHCGSNGVPNRDALNESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCTRMRIMKSSEAIGLAPRAMEKCKNR

AT3G04730.1 indoleacetic acid-induced protein 161.4e-2972.5Show/hide
Query:  GHCGSNGVPNRDALNESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCTRMRIMKSSEAIGLAPRAMEKCKNRN
        G+ G  G+  +D +NES+L+DLL+GS+YV TYEDKDGDWMLVGDVPWEMF +SC R+RIMK SEAIGLAPRA+EKCKNR+
Subjt:  GHCGSNGVPNRDALNESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCTRMRIMKSSEAIGLAPRAMEKCKNRN

AT4G29080.1 phytochrome-associated protein 21.0e-3076.25Show/hide
Query:  GHCGSNGVPNRDALNESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCTRMRIMKSSEAIGLAPRAMEKCKNRN
        G  GS+G   RD LNESRL DLL GSEYV+TYEDKD DWMLVGDVPWEMF  SC ++RIMKSSEAIGLAPR MEKC++RN
Subjt:  GHCGSNGVPNRDALNESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCTRMRIMKSSEAIGLAPRAMEKCKNRN

AT5G65670.2 indole-3-acetic acid inducible 91.2e-2868.35Show/hide
Query:  GHCGSNGVPNRDALNESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCTRMRIMKSSEAIGLAPRAMEKCKNR
        G CGSNG   +D L+E++L DLL+G +YVLTYEDKDGDWMLVGDVPWEMF + C +++IMK  +AIGLAPRAMEK K R
Subjt:  GHCGSNGVPNRDALNESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCTRMRIMKSSEAIGLAPRAMEKCKNR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAGGTCATTGTGGCTCTAATGGAGTTCCCAACCGGGATGCATTAAACGAGAGTCGGTTGATGGATCTGCTCCATGGCTCTGAGTATGTACTCACCTATGAAGATAA
GGATGGTGATTGGATGCTTGTTGGTGATGTTCCATGGGAGATGTTCACTGAATCTTGCACAAGGATGAGGATCATGAAGAGTTCAGAGGCTATTGGGTTAGCTCCAAGGG
CCATGGAGAAATGCAAAAACCGTAATTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCAGGTCATTGTGGCTCTAATGGAGTTCCCAACCGGGATGCATTAAACGAGAGTCGGTTGATGGATCTGCTCCATGGCTCTGAGTATGTACTCACCTATGAAGATAA
GGATGGTGATTGGATGCTTGTTGGTGATGTTCCATGGGAGATGTTCACTGAATCTTGCACAAGGATGAGGATCATGAAGAGTTCAGAGGCTATTGGGTTAGCTCCAAGGG
CCATGGAGAAATGCAAAAACCGTAATTAGCAAACGCTTTTGCTATATCGATGCATCAATCACGCACGTTAGAGCAAATGACGTTTGAAGTAAACGTATAATCTGCCTGCT
GGAAGCGTAGATCAATCGAGAGAATCTTTACTGAGTATTGTGTTGTTCTTTGTGCATGAGTTCGAAATATTGGAGAGTTGATGTATCAAGATAACTTCTTTGTTGGCAAA
GATGATTTTCAATAGGACGATTCACAAGTTTATTAGTTTGGCCCCTTCCCCCACCTTTCTTTGTGATTTTACTTGGGTTGTTGTTGCTACACTTTTACTTTGTATTGTAA
ATGGTTTGTTTGCTATGCCAAATGTATCCCTCACCCTTCATATCTGCCTGCTTCCTCCTCCCCTTTGCTTCTTGTTGTGGCTGTTGAAAGCTTCCAAAAGAGAGTTGAAT
TATACTGATACCTTTTATTATTTATTTCCATGTCTTCTATTTC
Protein sequenceShow/hide protein sequence
MSGHCGSNGVPNRDALNESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCTRMRIMKSSEAIGLAPRAMEKCKNRN