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Lsi06G008610 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi06G008610
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionDynein light chain
Genome locationchr06:18135539..18136307
RNA-Seq ExpressionLsi06G008610
SyntenyLsi06G008610
Gene Ontology termsGO:0007017 - microtubule-based process (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005874 - microtubule (cellular component)
GO:0030286 - dynein complex (cellular component)
GO:0045505 - dynein intermediate chain binding (molecular function)
GO:0051959 - dynein light intermediate chain binding (molecular function)
InterPro domainsIPR001372 - Dynein light chain, type 1/2
IPR037177 - Dynein light chain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004150050.1 dynein light chain 1, cytoplasmic [Cucumis sativus]7.4e-4092.39Show/hide
Query:  MLEGKATLKETDMSEKMQIHAMASASQALDLFDVSDSLSLAAHIKKDFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKAPS
        MLEGKAT+KETDMSEKMQ+HAMASASQALDLFDVSDSLSLA+HIKKDFD TYGSGWQCVVGSNFGCFFTHS G+FIYFSLETLNFLIFK+PS
Subjt:  MLEGKATLKETDMSEKMQIHAMASASQALDLFDVSDSLSLAAHIKKDFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKAPS

XP_008462685.1 PREDICTED: dynein light chain 1, cytoplasmic-like [Cucumis melo]6.9e-3889.13Show/hide
Query:  MLEGKATLKETDMSEKMQIHAMASASQALDLFDVSDSLSLAAHIKKDFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKAPS
        MLEGKAT+KETDMSEKMQ+HAMASAS ALDLFDVSD LSLA++IKKDFD TYGSGWQCVVGSNFGCFFTHS G+FIYFSLETLNFLIFK+PS
Subjt:  MLEGKATLKETDMSEKMQIHAMASASQALDLFDVSDSLSLAAHIKKDFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKAPS

XP_022144999.1 dynein light chain 1, cytoplasmic-like [Momordica charantia]4.2e-3585.71Show/hide
Query:  MLEGKATLKETDMSEKMQIHAMASASQALDLFDVSDSLSLAAHIKKDFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKAP
        MLEGK  +KETDMSEKMQIHAMASAS ALDLFDVSD LSLAAHIKK+FDRTYG GWQCVVGSNFG FFTHS  +FIYF+LETLNFLIFK P
Subjt:  MLEGKATLKETDMSEKMQIHAMASASQALDLFDVSDSLSLAAHIKKDFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKAP

XP_022933771.1 dynein light chain 1, cytoplasmic-like [Cucurbita moschata]4.8e-3990.32Show/hide
Query:  MLEGKATLKETDMSEKMQIHAMASASQALDLFDVSDSLSLAAHIKKDFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKAPSN
        MLEGKAT+K+TDMSEKMQIHA ASAS ALDLFDVSD LSLAAHIKK+FDR+YGSGWQCVVGSNFGCFFTHSKG+FIYFSLETLNFLIFKA SN
Subjt:  MLEGKATLKETDMSEKMQIHAMASASQALDLFDVSDSLSLAAHIKKDFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKAPSN

XP_038878771.1 dynein light chain 1, cytoplasmic-like [Benincasa hispida]3.0e-4194.62Show/hide
Query:  MLEGKATLKETDMSEKMQIHAMASASQALDLFDVSDSLSLAAHIKKDFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKAPSN
        MLEGKAT+KETDMSEKMQ HAMASAS ALDLFDVSDSLSLAAHIKKDFDR YGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFK+PSN
Subjt:  MLEGKATLKETDMSEKMQIHAMASASQALDLFDVSDSLSLAAHIKKDFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKAPSN

TrEMBL top hitse value%identityAlignment
A0A1S3CJ38 Dynein light chain3.3e-3889.13Show/hide
Query:  MLEGKATLKETDMSEKMQIHAMASASQALDLFDVSDSLSLAAHIKKDFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKAPS
        MLEGKAT+KETDMSEKMQ+HAMASAS ALDLFDVSD LSLA++IKKDFD TYGSGWQCVVGSNFGCFFTHS G+FIYFSLETLNFLIFK+PS
Subjt:  MLEGKATLKETDMSEKMQIHAMASASQALDLFDVSDSLSLAAHIKKDFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKAPS

A0A6J0ZN37 Dynein light chain1.0e-3479.57Show/hide
Query:  MLEGKATLKETDMSEKMQIHAMASASQALDLFDVSDSLSLAAHIKKDFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKAPSN
        MLEGKA +KETDMSEKMQ  AMASASQALDL+DVSD +S+AAHIKK+FD+ YGSGWQCVVGSNFGCFFTH+KG+F+YF+L TLNFLIFK  S+
Subjt:  MLEGKATLKETDMSEKMQIHAMASASQALDLFDVSDSLSLAAHIKKDFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKAPSN

A0A6J1CTX2 Dynein light chain2.0e-3585.71Show/hide
Query:  MLEGKATLKETDMSEKMQIHAMASASQALDLFDVSDSLSLAAHIKKDFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKAP
        MLEGK  +KETDMSEKMQIHAMASAS ALDLFDVSD LSLAAHIKK+FDRTYG GWQCVVGSNFG FFTHS  +FIYF+LETLNFLIFK P
Subjt:  MLEGKATLKETDMSEKMQIHAMASASQALDLFDVSDSLSLAAHIKKDFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKAP

A0A6J1EZZ1 Dynein light chain2.3e-3990.32Show/hide
Query:  MLEGKATLKETDMSEKMQIHAMASASQALDLFDVSDSLSLAAHIKKDFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKAPSN
        MLEGKAT+K+TDMSEKMQIHA ASAS ALDLFDVSD LSLAAHIKK+FDR+YGSGWQCVVGSNFGCFFTHSKG+FIYFSLETLNFLIFKA SN
Subjt:  MLEGKATLKETDMSEKMQIHAMASASQALDLFDVSDSLSLAAHIKKDFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKAPSN

A0A6J1I806 Dynein light chain2.3e-3990.32Show/hide
Query:  MLEGKATLKETDMSEKMQIHAMASASQALDLFDVSDSLSLAAHIKKDFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKAPSN
        MLEGKAT+K+TDMSEKMQIHA ASAS ALDLFDVSD LSLAAHIKK+FDR+YGSGWQCVVGSNFGCFFTHSKG+FIYFSLETLNFLIFKA SN
Subjt:  MLEGKATLKETDMSEKMQIHAMASASQALDLFDVSDSLSLAAHIKKDFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKAPSN

SwissProt top hitse value%identityAlignment
P61273 Dynein light chain 1, cytoplasmic8.5e-1544.44Show/hide
Query:  MLEGKATLKETDMSEKMQIHAMASASQALDLFDVSDSLSLAAHIKKDFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKA
        M + KA +K  DMSE+MQ  ++  A+QAL+ +++     +AAHIKK+FD+ Y   W C+VG NFG + TH    FIYF L  +  L+FK+
Subjt:  MLEGKATLKETDMSEKMQIHAMASASQALDLFDVSDSLSLAAHIKKDFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKA

P61285 Dynein light chain 1, cytoplasmic8.5e-1544.44Show/hide
Query:  MLEGKATLKETDMSEKMQIHAMASASQALDLFDVSDSLSLAAHIKKDFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKA
        M + KA +K  DMSE+MQ  ++  A+QAL+ +++     +AAHIKK+FD+ Y   W C+VG NFG + TH    FIYF L  +  L+FK+
Subjt:  MLEGKATLKETDMSEKMQIHAMASASQALDLFDVSDSLSLAAHIKKDFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKA

P63167 Dynein light chain 1, cytoplasmic8.5e-1544.44Show/hide
Query:  MLEGKATLKETDMSEKMQIHAMASASQALDLFDVSDSLSLAAHIKKDFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKA
        M + KA +K  DMSE+MQ  ++  A+QAL+ +++     +AAHIKK+FD+ Y   W C+VG NFG + TH    FIYF L  +  L+FK+
Subjt:  MLEGKATLKETDMSEKMQIHAMASASQALDLFDVSDSLSLAAHIKKDFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKA

P63168 Dynein light chain 1, cytoplasmic8.5e-1544.44Show/hide
Query:  MLEGKATLKETDMSEKMQIHAMASASQALDLFDVSDSLSLAAHIKKDFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKA
        M + KA +K  DMSE+MQ  ++  A+QAL+ +++     +AAHIKK+FD+ Y   W C+VG NFG + TH    FIYF L  +  L+FK+
Subjt:  MLEGKATLKETDMSEKMQIHAMASASQALDLFDVSDSLSLAAHIKKDFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKA

P63169 Dynein light chain 1, cytoplasmic8.5e-1544.44Show/hide
Query:  MLEGKATLKETDMSEKMQIHAMASASQALDLFDVSDSLSLAAHIKKDFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKA
        M + KA +K  DMSE+MQ  ++  A+QAL+ +++     +AAHIKK+FD+ Y   W C+VG NFG + TH    FIYF L  +  L+FK+
Subjt:  MLEGKATLKETDMSEKMQIHAMASASQALDLFDVSDSLSLAAHIKKDFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKA

Arabidopsis top hitse value%identityAlignment
AT1G52240.1 RHO guanyl-nucleotide exchange factor 114.2e-1769.49Show/hide
Query:  MLEGKATLKETDMSEKMQIHAMASASQALDLFDVSDSLSLAAHIKKDFDRTYGSGWQCV
        MLEGKA ++++DM  KMQ+ AMA ASQALDLFDV D  S+A HIKK+FD  YGSGWQCV
Subjt:  MLEGKATLKETDMSEKMQIHAMASASQALDLFDVSDSLSLAAHIKKDFDRTYGSGWQCV

AT1G52240.2 RHO guanyl-nucleotide exchange factor 113.8e-3475Show/hide
Query:  MLEGKATLKETDMSEKMQIHAMASASQALDLFDVSDSLSLAAHIKKDFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKAPS
        MLEGKA ++++DM  KMQ+ AMA ASQALDLFDV D  S+A HIKK+FD  YGSGWQCVVGSNFGCFFTHSKG+FIYF LETL FLIFK  S
Subjt:  MLEGKATLKETDMSEKMQIHAMASASQALDLFDVSDSLSLAAHIKKDFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKAPS

AT3G16120.1 Dynein light chain type 1 family protein2.2e-3477.53Show/hide
Query:  MLEGKATLKETDMSEKMQIHAMASASQALDLFDVSDSLSLAAHIKKDFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFK
        MLEGKA ++ETDM  KMQ+ AM  ASQ+LDLFDV DS+S+AAHIKK+FD  YGSGWQCVVG+NFGCFFTHSKG+FIYF L TLNFLIFK
Subjt:  MLEGKATLKETDMSEKMQIHAMASASQALDLFDVSDSLSLAAHIKKDFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFK

AT4G27360.1 Dynein light chain type 1 family protein3.9e-2355.06Show/hide
Query:  MLEGKATLKETDMSEKMQIHAMASASQALDLFDVSDSLSLAAHIKKDFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFK
        MLEGKA + +TDM + M+  A++ AS+ALD FDV++   +A  IKK+FDR+YGSGWQC+VG++FG F TH  G FI+FS+ +L  L+FK
Subjt:  MLEGKATLKETDMSEKMQIHAMASASQALDLFDVSDSLSLAAHIKKDFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFK

AT5G20110.1 Dynein light chain type 1 family protein3.9e-1548.72Show/hide
Query:  DMSEKMQIHAMASASQALDLFDVSDSLSLAAHIKKDFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFK
        DM   MQ HA   A   LD  +   S  +A ++KK+FD+ YG  W C+VGS+FG F THS G FIYFS++ L  L+FK
Subjt:  DMSEKMQIHAMASASQALDLFDVSDSLSLAAHIKKDFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGGAAGGGAAGGCCACCTTGAAAGAAACCGACATGTCGGAAAAAATGCAGATTCACGCCATGGCCTCTGCATCTCAAGCCCTTGATCTCTTCGACGTCTCCGATTC
CCTTTCCCTTGCTGCCCATATCAAGAAGGATTTTGATCGTACTTATGGAAGTGGTTGGCAATGCGTGGTGGGTTCCAATTTCGGCTGCTTCTTCACTCATTCCAAGGGGA
GTTTCATCTATTTTTCTCTTGAAACTCTCAATTTTCTCATCTTTAAAGCCCCTTCTAATTAA
mRNA sequenceShow/hide mRNA sequence
AAAGGTTGGAAGTATTCCATACGCAAAACACCAGTCAGCTTCGAGGAGTCATTGTAGGCGGTGACAGAAGAAATAGAGAAAGATAAGAGAGTCACACACCAGAGAGAAAT
AAAAGAAGAAGCAGCCGATTCAAGATGTTGGAAGGGAAGGCCACCTTGAAAGAAACCGACATGTCGGAAAAAATGCAGATTCACGCCATGGCCTCTGCATCTCAAGCCCT
TGATCTCTTCGACGTCTCCGATTCCCTTTCCCTTGCTGCCCATATCAAGAAGGATTTTGATCGTACTTATGGAAGTGGTTGGCAATGCGTGGTGGGTTCCAATTTCGGCT
GCTTCTTCACTCATTCCAAGGGGAGTTTCATCTATTTTTCTCTTGAAACTCTCAATTTTCTCATCTTTAAAGCCCCTTCTAATTAAGTTCTTCAAGGGCATCCTCGTCTT
TTCCCCTCTCTTCATCCCCTATAATTTACATGGAACAACAAATTACAAACCGTCTATGTATTGTATTTGTCACATGTATCCTCTAATTTCTCCTTATACTATGTTTTATA
ATGATTAATTATTCTCATTTCTTTCTTAA
Protein sequenceShow/hide protein sequence
MLEGKATLKETDMSEKMQIHAMASASQALDLFDVSDSLSLAAHIKKDFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKAPSN