CuGenDBv2

Gene ID	Lsi06G008930
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Photosystem II CP43 reaction center protein
Genome location	chr06:18519976..18520789
RNA-Seq Expression	Lsi06G008930
Synteny	Lsi06G008930
Gene Ontology terms	GO:0009772 - photosynthetic electron transport in photosystem II (biological process) GO:0018298 - protein-chromophore linkage (biological process) GO:0009523 - photosystem II (cellular component) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0016168 - chlorophyll binding (molecular function) GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (molecular function) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR000932 - Photosystem antenna protein-like IPR036001 - Photosystem antenna protein-like superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG2251033.1 hypothetical protein Bca52824_081169 [Brassica carinata]

1.1e-47

90.99

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Query:  GVFVLGWRLKISLMKTLYSLRRFYHVETLFNGTLALAGRDQETT-----VGNARLINLSSKLLGAHVAHARLIVFWAGAMNLFEVTHFVSEKPMYEQGLI
        GVF LGWRLKISLMKTLYSLRRFYHVETLFNGTLALAGRDQETT      GNARLINLSSKLLGAHVAHA LIVFWAGAMNLFEV HFV EKPMYEQGLI
Subjt:  GVFVLGWRLKISLMKTLYSLRRFYHVETLFNGTLALAGRDQETT-----VGNARLINLSSKLLGAHVAHARLIVFWAGAMNLFEVTHFVSEKPMYEQGLI

Query:  LLPHLATLGWG
        LLPHLATLGWG
Subjt:  LLPHLATLGWG

KAG2275614.1 hypothetical protein Bca52824_058169 [Brassica carinata]

3.2e-47

90.09

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Query:  GVFVLGWRLKISLMKTLYSLRRFYHVETLFNGTLALAGRDQETT-----VGNARLINLSSKLLGAHVAHARLIVFWAGAMNLFEVTHFVSEKPMYEQGLI
        GVF LGWRLKISLMKTLYSLRRFYHVETLFNGTLALAGRDQETT      GNARLINLS KLLGAHVAHA LIVFWAGAMNLFEV HFV EKPMYEQGLI
Subjt:  GVFVLGWRLKISLMKTLYSLRRFYHVETLFNGTLALAGRDQETT-----VGNARLINLSSKLLGAHVAHARLIVFWAGAMNLFEVTHFVSEKPMYEQGLI

Query:  LLPHLATLGWG
        LLPHLATLGWG
Subjt:  LLPHLATLGWG

YP_009179052.1 photosystem II 44 kDa protein [Ostrya rehderiana]

2.5e-47

90.18

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Query:  MGVFVLGWRLKISLMKTLYSLRRFYHVETLFNGTLALAGRDQETT-----VGNARLINLSSKLLGAHVAHARLIVFWAGAMNLFEVTHFVSEKPMYEQGL
        M VFVLGWRLKISLMKTLYSLRRFYHVETLFNGTLALAGRDQETT      GNARLINLS KLLGAHVAHA LIVFWAGAMNLFEV HFV EKPMYEQGL
Subjt:  MGVFVLGWRLKISLMKTLYSLRRFYHVETLFNGTLALAGRDQETT-----VGNARLINLSSKLLGAHVAHARLIVFWAGAMNLFEVTHFVSEKPMYEQGL

Query:  ILLPHLATLGWG
        ILLPHLATLGWG
Subjt:  ILLPHLATLGWG

YP_009464095.1 photosystem II CP43 chlorophyll apoprotein [Trapa maximowiczii]

2.5e-47

90.18

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Query:  MGVFVLGWRLKISLMKTLYSLRRFYHVETLFNGTLALAGRDQETT-----VGNARLINLSSKLLGAHVAHARLIVFWAGAMNLFEVTHFVSEKPMYEQGL
        M VFVLGWRLKISLMKTLYSLRRFYHVETLFNGTLALAGRDQETT      GNARLINLS KLLGAHVAHA LIVFWAGAMNLFEV HFV EKPMYEQGL
Subjt:  MGVFVLGWRLKISLMKTLYSLRRFYHVETLFNGTLALAGRDQETT-----VGNARLINLSSKLLGAHVAHARLIVFWAGAMNLFEVTHFVSEKPMYEQGL

Query:  ILLPHLATLGWG
        ILLPHLATLGWG
Subjt:  ILLPHLATLGWG

YP_010046377.1 photosystem II 44 kDa protein [Trapa bispinosa]

2.5e-47

90.18

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Query:  MGVFVLGWRLKISLMKTLYSLRRFYHVETLFNGTLALAGRDQETT-----VGNARLINLSSKLLGAHVAHARLIVFWAGAMNLFEVTHFVSEKPMYEQGL
        M VFVLGWRLKISLMKTLYSLRRFYHVETLFNGTLALAGRDQETT      GNARLINLS KLLGAHVAHA LIVFWAGAMNLFEV HFV EKPMYEQGL
Subjt:  MGVFVLGWRLKISLMKTLYSLRRFYHVETLFNGTLALAGRDQETT-----VGNARLINLSSKLLGAHVAHARLIVFWAGAMNLFEVTHFVSEKPMYEQGL

Query:  ILLPHLATLGWG
        ILLPHLATLGWG
Subjt:  ILLPHLATLGWG

TrEMBL top hits

e value

%identity

Alignment

A0A076FI67 Photosystem II CP43 reaction center protein (Fragment)

2.7e-47

90.91

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Query:  VFVLGWRLKISLMKTLYSLRRFYHVETLFNGTLALAGRDQETT-----VGNARLINLSSKLLGAHVAHARLIVFWAGAMNLFEVTHFVSEKPMYEQGLIL
        VFVLGWRLKISLMKTLYSLRRFYHVETLFNGTLALAGRDQETT      GNARLINLS KLLGAHVAHA LIVFWAGAMNLFEV HFV EKPMYEQGLIL
Subjt:  VFVLGWRLKISLMKTLYSLRRFYHVETLFNGTLALAGRDQETT-----VGNARLINLSSKLLGAHVAHARLIVFWAGAMNLFEVTHFVSEKPMYEQGLIL

Query:  LPHLATLGWG
        LPHLATLGWG
Subjt:  LPHLATLGWG

A0A0P0JQH1 Photosystem II CP43 reaction center protein

1.2e-47

90.18

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Query:  MGVFVLGWRLKISLMKTLYSLRRFYHVETLFNGTLALAGRDQETT-----VGNARLINLSSKLLGAHVAHARLIVFWAGAMNLFEVTHFVSEKPMYEQGL
        M VFVLGWRLKISLMKTLYSLRRFYHVETLFNGTLALAGRDQETT      GNARLINLS KLLGAHVAHA LIVFWAGAMNLFEV HFV EKPMYEQGL
Subjt:  MGVFVLGWRLKISLMKTLYSLRRFYHVETLFNGTLALAGRDQETT-----VGNARLINLSSKLLGAHVAHARLIVFWAGAMNLFEVTHFVSEKPMYEQGL

Query:  ILLPHLATLGWG
        ILLPHLATLGWG
Subjt:  ILLPHLATLGWG

A0A1J3HJT2 Photosystem II CP43 reaction center protein (Fragment)

1.2e-47

90.18

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Query:  MGVFVLGWRLKISLMKTLYSLRRFYHVETLFNGTLALAGRDQETT-----VGNARLINLSSKLLGAHVAHARLIVFWAGAMNLFEVTHFVSEKPMYEQGL
        M VFVLGWRLKISLMKTLYSLRRFYHVETLFNGTLALAGRDQETT      GNARLINLS KLLGAHVAHA LIVFWAGAMNLFEV HFV EKPMYEQGL
Subjt:  MGVFVLGWRLKISLMKTLYSLRRFYHVETLFNGTLALAGRDQETT-----VGNARLINLSSKLLGAHVAHARLIVFWAGAMNLFEVTHFVSEKPMYEQGL

Query:  ILLPHLATLGWG
        ILLPHLATLGWG
Subjt:  ILLPHLATLGWG

A0A2L0A1B3 Photosystem II CP43 reaction center protein

1.2e-47

90.18

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Query:  MGVFVLGWRLKISLMKTLYSLRRFYHVETLFNGTLALAGRDQETT-----VGNARLINLSSKLLGAHVAHARLIVFWAGAMNLFEVTHFVSEKPMYEQGL
        M VFVLGWRLKISLMKTLYSLRRFYHVETLFNGTLALAGRDQETT      GNARLINLS KLLGAHVAHA LIVFWAGAMNLFEV HFV EKPMYEQGL
Subjt:  MGVFVLGWRLKISLMKTLYSLRRFYHVETLFNGTLALAGRDQETT-----VGNARLINLSSKLLGAHVAHARLIVFWAGAMNLFEVTHFVSEKPMYEQGL

Query:  ILLPHLATLGWG
        ILLPHLATLGWG
Subjt:  ILLPHLATLGWG

A0A7T0CNY2 Photosystem II 44 kDa protein

1.2e-47

90.18

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Query:  MGVFVLGWRLKISLMKTLYSLRRFYHVETLFNGTLALAGRDQETT-----VGNARLINLSSKLLGAHVAHARLIVFWAGAMNLFEVTHFVSEKPMYEQGL
        M VFVLGWRLKISLMKTLYSLRRFYHVETLFNGTLALAGRDQETT      GNARLINLS KLLGAHVAHA LIVFWAGAMNLFEV HFV EKPMYEQGL
Subjt:  MGVFVLGWRLKISLMKTLYSLRRFYHVETLFNGTLALAGRDQETT-----VGNARLINLSSKLLGAHVAHARLIVFWAGAMNLFEVTHFVSEKPMYEQGL

Query:  ILLPHLATLGWG
        ILLPHLATLGWG
Subjt:  ILLPHLATLGWG

SwissProt top hits

e value

%identity

Alignment

A4QJB1 Photosystem II CP43 reaction center protein

6.5e-43

89.8

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Query:  MKTLYSLRRFYHVETLFNGTLALAGRDQETT-----VGNARLINLSSKLLGAHVAHARLIVFWAGAMNLFEVTHFVSEKPMYEQGLILLPHLATLGWG
        MKTLYSLRRFYHVETLFNGTLALAGRDQETT      GNARLINLS KLLGAHVAHA LIVFWAGAMNLFEV HFV EKPMYEQGLILLPHLATLGWG
Subjt:  MKTLYSLRRFYHVETLFNGTLALAGRDQETT-----VGNARLINLSSKLLGAHVAHARLIVFWAGAMNLFEVTHFVSEKPMYEQGLILLPHLATLGWG

A4QJJ5 Photosystem II CP43 reaction center protein

6.5e-43

89.8

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Query:  MKTLYSLRRFYHVETLFNGTLALAGRDQETT-----VGNARLINLSSKLLGAHVAHARLIVFWAGAMNLFEVTHFVSEKPMYEQGLILLPHLATLGWG
        MKTLYSLRRFYHVETLFNGTLALAGRDQETT      GNARLINLS KLLGAHVAHA LIVFWAGAMNLFEV HFV EKPMYEQGLILLPHLATLGWG
Subjt:  MKTLYSLRRFYHVETLFNGTLALAGRDQETT-----VGNARLINLSSKLLGAHVAHARLIVFWAGAMNLFEVTHFVSEKPMYEQGLILLPHLATLGWG

A4QK14 Photosystem II CP43 reaction center protein

6.5e-43

89.8

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Query:  MKTLYSLRRFYHVETLFNGTLALAGRDQETT-----VGNARLINLSSKLLGAHVAHARLIVFWAGAMNLFEVTHFVSEKPMYEQGLILLPHLATLGWG
        MKTLYSLRRFYHVETLFNGTLALAGRDQETT      GNARLINLS KLLGAHVAHA LIVFWAGAMNLFEV HFV EKPMYEQGLILLPHLATLGWG
Subjt:  MKTLYSLRRFYHVETLFNGTLALAGRDQETT-----VGNARLINLSSKLLGAHVAHARLIVFWAGAMNLFEVTHFVSEKPMYEQGLILLPHLATLGWG

P56778 Photosystem II CP43 reaction center protein

6.5e-43

89.8

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Query:  MKTLYSLRRFYHVETLFNGTLALAGRDQETT-----VGNARLINLSSKLLGAHVAHARLIVFWAGAMNLFEVTHFVSEKPMYEQGLILLPHLATLGWG
        MKTLYSLRRFYHVETLFNGTLALAGRDQETT      GNARLINLS KLLGAHVAHA LIVFWAGAMNLFEV HFV EKPMYEQGLILLPHLATLGWG
Subjt:  MKTLYSLRRFYHVETLFNGTLALAGRDQETT-----VGNARLINLSSKLLGAHVAHARLIVFWAGAMNLFEVTHFVSEKPMYEQGLILLPHLATLGWG

Q8S8X7 Photosystem II CP43 reaction center protein

6.5e-43

89.8

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Query:  MKTLYSLRRFYHVETLFNGTLALAGRDQETT-----VGNARLINLSSKLLGAHVAHARLIVFWAGAMNLFEVTHFVSEKPMYEQGLILLPHLATLGWG
        MKTLYSLRRFYHVETLFNGTLALAGRDQETT      GNARLINLS KLLGAHVAHA LIVFWAGAMNLFEV HFV EKPMYEQGLILLPHLATLGWG
Subjt:  MKTLYSLRRFYHVETLFNGTLALAGRDQETT-----VGNARLINLSSKLLGAHVAHARLIVFWAGAMNLFEVTHFVSEKPMYEQGLILLPHLATLGWG

Arabidopsis top hits

e value

%identity

Alignment

ATCG00280.1 photosystem II reaction center protein C

4.6e-44

89.8

Show/hide

Query:  MKTLYSLRRFYHVETLFNGTLALAGRDQETT-----VGNARLINLSSKLLGAHVAHARLIVFWAGAMNLFEVTHFVSEKPMYEQGLILLPHLATLGWG
        MKTLYSLRRFYHVETLFNGTLALAGRDQETT      GNARLINLS KLLGAHVAHA LIVFWAGAMNLFEV HFV EKPMYEQGLILLPHLATLGWG
Subjt:  MKTLYSLRRFYHVETLFNGTLALAGRDQETT-----VGNARLINLSSKLLGAHVAHARLIVFWAGAMNLFEVTHFVSEKPMYEQGLILLPHLATLGWG

Sequences

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CDS sequence

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ATGGGTGTATTCGTGCTTGGATGGCGGCTTAAGATTAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAATGGAACTTTAGCTTT
AGCTGGTCGTGACCAAGAAACCACCGTCGGGAATGCCCGACTTATCAATTTATCCAGTAAACTACTGGGGGCTCATGTAGCCCATGCCAGATTAATCGTATTCTGGGCCG
GAGCAATGAACCTATTCGAAGTGACTCATTTCGTATCAGAGAAACCCATGTATGAACAAGGATTAATTTTACTTCCCCACCTAGCTACTTTAGGTTGGGGGTAG

mRNA sequence

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Protein sequence

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MGVFVLGWRLKISLMKTLYSLRRFYHVETLFNGTLALAGRDQETTVGNARLINLSSKLLGAHVAHARLIVFWAGAMNLFEVTHFVSEKPMYEQGLILLPHLATLGWG

Lsi06G008930 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome