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Lsi06G009460 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi06G009460
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionzinc finger Ran-binding domain-containing protein 2-like
Genome locationchr06:19397450..19398820
RNA-Seq ExpressionLsi06G009460
SyntenyLsi06G009460
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR001876 - Zinc finger, RanBP2-type
IPR036443 - Zinc finger, RanBP2-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004150016.3 zinc finger Ran-binding domain-containing protein 2 isoform X2 [Cucumis sativus]1.9e-8497.14Show/hide
Query:  MSWSAGDWICNVCQNVNFKKREACHRCAYPKYGGPDPSTYSYNKTEALAGDWYCTTISCGAHNYASRPNCFRCGAFKSVYPGDYGSYMIGSDQYGSDASI
        MSWSAGDWICNVCQNVNFKKREACHRC YPKYGGPDPSTYSYNKTEALAGDWYCTT+SCGAHNYASRPNCFRCGAFKSVYPGDYG+YM+GSDQYGSDASI
Subjt:  MSWSAGDWICNVCQNVNFKKREACHRCAYPKYGGPDPSTYSYNKTEALAGDWYCTTISCGAHNYASRPNCFRCGAFKSVYPGDYGSYMIGSDQYGSDASI

Query:  PPGWKSGDWICPRMGCGVHNYASRMECFKCKTPRDFGGAV
        PPGWKSGDWICPRMGCGVHNYASRMECFKCKTPRDFGGAV
Subjt:  PPGWKSGDWICPRMGCGVHNYASRMECFKCKTPRDFGGAV

XP_008465020.2 PREDICTED: uncharacterized protein LOC103502740 isoform X3 [Cucumis melo]1.4e-8297.08Show/hide
Query:  MSWSAGDWICNVCQNVNFKKREACHRCAYPKYGGPDPSTYSYNKTEALAGDWYCTTISCGAHNYASRPNCFRCGAFKSVYPGDYGSYMIGSDQYGSDASI
        MSWSAGDWICNVCQNVNFKKREACHRC YPKYGGPDPSTYSYNKTEALAGDWYCTT+SCGAHNYASRPNCFRCGAFKSVYPGDYG+YM+GSDQYGSDASI
Subjt:  MSWSAGDWICNVCQNVNFKKREACHRCAYPKYGGPDPSTYSYNKTEALAGDWYCTTISCGAHNYASRPNCFRCGAFKSVYPGDYGSYMIGSDQYGSDASI

Query:  PPGWKSGDWICPRMGCGVHNYASRMECFKCKTPRDFG
        PPGWKSGDWICPRMGCGVHNYASRMECFKCKTPRDFG
Subjt:  PPGWKSGDWICPRMGCGVHNYASRMECFKCKTPRDFG

XP_008465021.2 PREDICTED: uncharacterized protein LOC103502740 isoform X2 [Cucumis melo]1.9e-8497.14Show/hide
Query:  MSWSAGDWICNVCQNVNFKKREACHRCAYPKYGGPDPSTYSYNKTEALAGDWYCTTISCGAHNYASRPNCFRCGAFKSVYPGDYGSYMIGSDQYGSDASI
        MSWSAGDWICNVCQNVNFKKREACHRC YPKYGGPDPSTYSYNKTEALAGDWYCTT+SCGAHNYASRPNCFRCGAFKSVYPGDYG+YM+GSDQYGSDASI
Subjt:  MSWSAGDWICNVCQNVNFKKREACHRCAYPKYGGPDPSTYSYNKTEALAGDWYCTTISCGAHNYASRPNCFRCGAFKSVYPGDYGSYMIGSDQYGSDASI

Query:  PPGWKSGDWICPRMGCGVHNYASRMECFKCKTPRDFGGAV
        PPGWKSGDWICPRMGCGVHNYASRMECFKCKTPRDFGGAV
Subjt:  PPGWKSGDWICPRMGCGVHNYASRMECFKCKTPRDFGGAV

XP_011656267.2 zinc finger Ran-binding domain-containing protein 2 isoform X1 [Cucumis sativus]1.4e-8297.08Show/hide
Query:  MSWSAGDWICNVCQNVNFKKREACHRCAYPKYGGPDPSTYSYNKTEALAGDWYCTTISCGAHNYASRPNCFRCGAFKSVYPGDYGSYMIGSDQYGSDASI
        MSWSAGDWICNVCQNVNFKKREACHRC YPKYGGPDPSTYSYNKTEALAGDWYCTT+SCGAHNYASRPNCFRCGAFKSVYPGDYG+YM+GSDQYGSDASI
Subjt:  MSWSAGDWICNVCQNVNFKKREACHRCAYPKYGGPDPSTYSYNKTEALAGDWYCTTISCGAHNYASRPNCFRCGAFKSVYPGDYGSYMIGSDQYGSDASI

Query:  PPGWKSGDWICPRMGCGVHNYASRMECFKCKTPRDFG
        PPGWKSGDWICPRMGCGVHNYASRMECFKCKTPRDFG
Subjt:  PPGWKSGDWICPRMGCGVHNYASRMECFKCKTPRDFG

XP_038880145.1 zinc finger Ran-binding domain-containing protein 2-like isoform X2 [Benincasa hispida]1.3e-8397.14Show/hide
Query:  MSWSAGDWICNVCQNVNFKKREACHRCAYPKYGGPDPSTYSYNKTEALAGDWYCTTISCGAHNYASRPNCFRCGAFKSVYPGDYGSYMIGSDQYGSDASI
        MSWSAGDWICNVCQNVNFKKREACHRC YPKYGGPDPSTYSYNKTEALAGDWYCTT SCGAHNYASRPNCFRCGAFKSVYPGDYG+YM+GSDQYGSDASI
Subjt:  MSWSAGDWICNVCQNVNFKKREACHRCAYPKYGGPDPSTYSYNKTEALAGDWYCTTISCGAHNYASRPNCFRCGAFKSVYPGDYGSYMIGSDQYGSDASI

Query:  PPGWKSGDWICPRMGCGVHNYASRMECFKCKTPRDFGGAV
        PPGWKSGDWICPRMGCGVHNYASRMECFKCKTPRDFGGAV
Subjt:  PPGWKSGDWICPRMGCGVHNYASRMECFKCKTPRDFGGAV

TrEMBL top hitse value%identityAlignment
A0A0A0LWE1 Uncharacterized protein9.4e-8597.14Show/hide
Query:  MSWSAGDWICNVCQNVNFKKREACHRCAYPKYGGPDPSTYSYNKTEALAGDWYCTTISCGAHNYASRPNCFRCGAFKSVYPGDYGSYMIGSDQYGSDASI
        MSWSAGDWICNVCQNVNFKKREACHRC YPKYGGPDPSTYSYNKTEALAGDWYCTT+SCGAHNYASRPNCFRCGAFKSVYPGDYG+YM+GSDQYGSDASI
Subjt:  MSWSAGDWICNVCQNVNFKKREACHRCAYPKYGGPDPSTYSYNKTEALAGDWYCTTISCGAHNYASRPNCFRCGAFKSVYPGDYGSYMIGSDQYGSDASI

Query:  PPGWKSGDWICPRMGCGVHNYASRMECFKCKTPRDFGGAV
        PPGWKSGDWICPRMGCGVHNYASRMECFKCKTPRDFGGAV
Subjt:  PPGWKSGDWICPRMGCGVHNYASRMECFKCKTPRDFGGAV

A0A1S3CMY6 uncharacterized protein LOC103502740 isoform X29.4e-8597.14Show/hide
Query:  MSWSAGDWICNVCQNVNFKKREACHRCAYPKYGGPDPSTYSYNKTEALAGDWYCTTISCGAHNYASRPNCFRCGAFKSVYPGDYGSYMIGSDQYGSDASI
        MSWSAGDWICNVCQNVNFKKREACHRC YPKYGGPDPSTYSYNKTEALAGDWYCTT+SCGAHNYASRPNCFRCGAFKSVYPGDYG+YM+GSDQYGSDASI
Subjt:  MSWSAGDWICNVCQNVNFKKREACHRCAYPKYGGPDPSTYSYNKTEALAGDWYCTTISCGAHNYASRPNCFRCGAFKSVYPGDYGSYMIGSDQYGSDASI

Query:  PPGWKSGDWICPRMGCGVHNYASRMECFKCKTPRDFGGAV
        PPGWKSGDWICPRMGCGVHNYASRMECFKCKTPRDFGGAV
Subjt:  PPGWKSGDWICPRMGCGVHNYASRMECFKCKTPRDFGGAV

A0A1S3CNB1 uncharacterized protein LOC103502740 isoform X16.7e-8397.08Show/hide
Query:  MSWSAGDWICNVCQNVNFKKREACHRCAYPKYGGPDPSTYSYNKTEALAGDWYCTTISCGAHNYASRPNCFRCGAFKSVYPGDYGSYMIGSDQYGSDASI
        MSWSAGDWICNVCQNVNFKKREACHRC YPKYGGPDPSTYSYNKTEALAGDWYCTT+SCGAHNYASRPNCFRCGAFKSVYPGDYG+YM+GSDQYGSDASI
Subjt:  MSWSAGDWICNVCQNVNFKKREACHRCAYPKYGGPDPSTYSYNKTEALAGDWYCTTISCGAHNYASRPNCFRCGAFKSVYPGDYGSYMIGSDQYGSDASI

Query:  PPGWKSGDWICPRMGCGVHNYASRMECFKCKTPRDFG
        PPGWKSGDWICPRMGCGVHNYASRMECFKCKTPRDFG
Subjt:  PPGWKSGDWICPRMGCGVHNYASRMECFKCKTPRDFG

A0A1S3CPF6 uncharacterized protein LOC103502740 isoform X36.7e-8397.08Show/hide
Query:  MSWSAGDWICNVCQNVNFKKREACHRCAYPKYGGPDPSTYSYNKTEALAGDWYCTTISCGAHNYASRPNCFRCGAFKSVYPGDYGSYMIGSDQYGSDASI
        MSWSAGDWICNVCQNVNFKKREACHRC YPKYGGPDPSTYSYNKTEALAGDWYCTT+SCGAHNYASRPNCFRCGAFKSVYPGDYG+YM+GSDQYGSDASI
Subjt:  MSWSAGDWICNVCQNVNFKKREACHRCAYPKYGGPDPSTYSYNKTEALAGDWYCTTISCGAHNYASRPNCFRCGAFKSVYPGDYGSYMIGSDQYGSDASI

Query:  PPGWKSGDWICPRMGCGVHNYASRMECFKCKTPRDFG
        PPGWKSGDWICPRMGCGVHNYASRMECFKCKTPRDFG
Subjt:  PPGWKSGDWICPRMGCGVHNYASRMECFKCKTPRDFG

A0A5D3E0T0 Zinc finger Ran-binding domain-containing protein 2-like isoform X39.4e-8597.14Show/hide
Query:  MSWSAGDWICNVCQNVNFKKREACHRCAYPKYGGPDPSTYSYNKTEALAGDWYCTTISCGAHNYASRPNCFRCGAFKSVYPGDYGSYMIGSDQYGSDASI
        MSWSAGDWICNVCQNVNFKKREACHRC YPKYGGPDPSTYSYNKTEALAGDWYCTT+SCGAHNYASRPNCFRCGAFKSVYPGDYG+YM+GSDQYGSDASI
Subjt:  MSWSAGDWICNVCQNVNFKKREACHRCAYPKYGGPDPSTYSYNKTEALAGDWYCTTISCGAHNYASRPNCFRCGAFKSVYPGDYGSYMIGSDQYGSDASI

Query:  PPGWKSGDWICPRMGCGVHNYASRMECFKCKTPRDFGGAV
        PPGWKSGDWICPRMGCGVHNYASRMECFKCKTPRDFGGAV
Subjt:  PPGWKSGDWICPRMGCGVHNYASRMECFKCKTPRDFGGAV

SwissProt top hitse value%identityAlignment
O13801 Uncharacterized RNA-binding protein C17H9.04c1.2e-0726.15Show/hide
Query:  GDWICNVCQNVNFKKREACHRCAYPKYGGPDPSTYSYN-KTEALAGDWYCTTISCGAHNYASRPNCFRCGAFKSVYPGDYGSYMIGSDQYGSDASIPPGW
        GDW C +C   NF++R +C RC++P       +T S     +   G+ Y    S    NY    +       +S      G+  +              +
Subjt:  GDWICNVCQNVNFKKREACHRCAYPKYGGPDPSTYSYN-KTEALAGDWYCTTISCGAHNYASRPNCFRCGAFKSVYPGDYGSYMIGSDQYGSDASIPPGW

Query:  KSGDWICPRMGCGVHNYASRMECFKCKTPR
        ++GDW C   GCG HN+A  + C +C   R
Subjt:  KSGDWICPRMGCGVHNYASRMECFKCKTPR

O95218 Zinc finger Ran-binding domain-containing protein 25.4e-0534.48Show/hide
Query:  GDWYCTTISCGAHNYASRPNCFRCGAFKSVYPGDYGSYMIGSDQYGSD-ASIPPG-WKSGDWICPRMGCGVHNYASRMECFKCKTPR
        GDW C    CG  N+A R +C RCG  K+    +      G  + G   A    G + + DW C    C   N+A R EC  C TP+
Subjt:  GDWYCTTISCGAHNYASRPNCFRCGAFKSVYPGDYGSYMIGSDQYGSD-ASIPPG-WKSGDWICPRMGCGVHNYASRMECFKCKTPR

Q19QU3 Zinc finger Ran-binding domain-containing protein 25.4e-0534.48Show/hide
Query:  GDWYCTTISCGAHNYASRPNCFRCGAFKSVYPGDYGSYMIGSDQYGSD-ASIPPG-WKSGDWICPRMGCGVHNYASRMECFKCKTPR
        GDW C    CG  N+A R +C RCG  K+    +      G  + G   A    G + + DW C    C   N+A R EC  C TP+
Subjt:  GDWYCTTISCGAHNYASRPNCFRCGAFKSVYPGDYGSYMIGSDQYGSD-ASIPPG-WKSGDWICPRMGCGVHNYASRMECFKCKTPR

Q5ZLX5 Zinc finger Ran-binding domain-containing protein 21.1e-0535.63Show/hide
Query:  GDWYCTTISCGAHNYASRPNCFRCGAFKSVYPGDYGSYMIGSDQYGSD-ASIPPG-WKSGDWICPRMGCGVHNYASRMECFKCKTPR
        GDW C    CG  N+A R +C RCG  K+    +      G  + G   A    G + + DW C    CG  N+A R EC  C TP+
Subjt:  GDWYCTTISCGAHNYASRPNCFRCGAFKSVYPGDYGSYMIGSDQYGSD-ASIPPG-WKSGDWICPRMGCGVHNYASRMECFKCKTPR

Q9R020 Zinc finger Ran-binding domain-containing protein 25.4e-0534.48Show/hide
Query:  GDWYCTTISCGAHNYASRPNCFRCGAFKSVYPGDYGSYMIGSDQYGSD-ASIPPG-WKSGDWICPRMGCGVHNYASRMECFKCKTPR
        GDW C    CG  N+A R +C RCG  K+    +      G  + G   A    G + + DW C    C   N+A R EC  C TP+
Subjt:  GDWYCTTISCGAHNYASRPNCFRCGAFKSVYPGDYGSYMIGSDQYGSD-ASIPPG-WKSGDWICPRMGCGVHNYASRMECFKCKTPR

Arabidopsis top hitse value%identityAlignment
AT1G70650.1 Ran BP2/NZF zinc finger-like superfamily protein2.8e-0427.71Show/hide
Query:  GDWICNVCQNVNFKKREACHRC-AYPKYGGPDPSTYSYNKTEALAGDWYCTTISCGAHNYASRPNCFRC---GAFKSVYPGDY
        GDW C  C+ +NF K   C RC  + +           +      GDW C T  C   N++    C RC      + + PG++
Subjt:  GDWICNVCQNVNFKKREACHRC-AYPKYGGPDPSTYSYNKTEALAGDWYCTTISCGAHNYASRPNCFRC---GAFKSVYPGDY

AT2G17975.1 zinc finger (Ran-binding) family protein2.6e-1835.57Show/hide
Query:  GDWICNVCQNVNFKKREACHRCAYPKYGGPDPSTYSYNKTEALAGDWYCTTISCGAHNYASRPNCFRCGAFKSV-------YPG----------------
        GDW C  C+N N+  R  C+RC  P+    D +T   +K     GDW CT   C  +NYASR  C +CG  K V        PG                
Subjt:  GDWICNVCQNVNFKKREACHRCAYPKYGGPDPSTYSYNKTEALAGDWYCTTISCGAHNYASRPNCFRCGAFKSV-------YPG----------------

Query:  -DYGSYMIGSDQYGSDASIPPGWKSGDWICPRMGCGVHNYASRMECFKC
         D    ++      + AS+   W+SGDWIC    CG HNY+SR++C KC
Subjt:  -DYGSYMIGSDQYGSDASIPPGWKSGDWICPRMGCGVHNYASRMECFKC

AT2G26695.1 Ran BP2/NZF zinc finger-like superfamily protein3.7e-5763.57Show/hide
Query:  MSWSAGDWICNVCQNVNFKKREACHRCAYPKYGGPDPSTYSYNKTEALAGDWYCTTISCGAHNYASRPNCFRCGAFKSVYPGD-YGSYMIGSDQYGSD-A
        MSW+ GDW+C  CQ+ NFKKRE+C +C YPK+GG D STY YN+TE +AGDWYC  ++CG+HNYASR +C+RCG  K  Y    YG+ M+    YG+D A
Subjt:  MSWSAGDWICNVCQNVNFKKREACHRCAYPKYGGPDPSTYSYNKTEALAGDWYCTTISCGAHNYASRPNCFRCGAFKSVYPGD-YGSYMIGSDQYGSD-A

Query:  SIPPGWKSGDWICPRMGCGVHNYASRMECFKCKTPRDFGG
        + PPGWK+GDW+CPR+GCGVHNYASR ECFKCKT RD+GG
Subjt:  SIPPGWKSGDWICPRMGCGVHNYASRMECFKCKTPRDFGG

AT3G15680.1 Ran BP2/NZF zinc finger-like superfamily protein1.1e-3242.21Show/hide
Query:  GDWICNVCQNVNFKKREACHRCA-------------YPKYGGPDPSTYSYNK-TEALAGDWYCTTISCGAHNYASRPNCFRCGAFK-SVYPGDYGSYMIG
        GDW C  C ++NF++R++C RC              +  +GG   S + +   ++   GDWYCT  +CG HN+ASR  CF+CG FK     G  G  + G
Subjt:  GDWICNVCQNVNFKKREACHRCA-------------YPKYGGPDPSTYSYNK-TEALAGDWYCTTISCGAHNYASRPNCFRCGAFK-SVYPGDYGSYMIG

Query:  SDQYGSD--ASIPPG------WKSGDWICPRMGCGVHNYASRMECFKCKTPRDF
           + +D   S  PG      WKSGDWIC R+GC  HN+ASRMECF+C  PRDF
Subjt:  SDQYGSD--ASIPPG------WKSGDWICPRMGCGVHNYASRMECFKCKTPRDF

AT5G25490.1 Ran BP2/NZF zinc finger-like superfamily protein5.9e-3137.11Show/hide
Query:  GDWICNVCQNVNFKKREACHRCAYPKYGG------------PDPSTYSYNK-TEALAGDWYCTTISCGAHNYASRPNCFRCGAFKSVYPGD---------
        GDW C +C ++NF++R++C RC  P+ GG            P  S++ +N   +   GDWYC    CG HN+A+R +CF+CGA K  +            
Subjt:  GDWICNVCQNVNFKKREACHRCAYPKYGG------------PDPSTYSYNK-TEALAGDWYCTTISCGAHNYASRPNCFRCGAFKSVYPGD---------

Query:  -------YGSYMIGSDQYGSDASIPPGWKSGDWICPRMGCGVHNYASRMECFKCKTPRD
                G +  G    G   +    WKSGDWICPR GC  HN+ASR ECF+C  P++
Subjt:  -------YGSYMIGSDQYGSDASIPPGWKSGDWICPRMGCGVHNYASRMECFKCKTPRD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCTGGTCAGCAGGAGATTGGATATGCAACGTTTGCCAGAACGTAAACTTCAAAAAAAGAGAAGCATGCCATCGTTGTGCTTACCCCAAGTATGGAGGCCCAGACCC
TTCAACTTACAGTTACAACAAGACGGAGGCGTTGGCCGGAGACTGGTACTGCACCACCATCAGCTGCGGAGCTCACAATTATGCCAGCCGCCCCAACTGCTTTAGATGTG
GTGCATTTAAGTCCGTCTATCCTGGTGATTATGGCTCCTACATGATCGGTTCCGATCAGTATGGATCTGATGCAAGCATCCCACCTGGATGGAAATCTGGAGACTGGATT
TGCCCTAGAATGGGATGCGGAGTACATAATTATGCAAGCAGGATGGAGTGTTTTAAATGCAAAACACCAAGAGATTTCGGTGGTGCAGTTTAA
mRNA sequenceShow/hide mRNA sequence
CCAACAAAATTTAAATTCAAATTCACCTATTACCCAACAGAACCATTCATTATTCCATCCATCTTCTTTTCTTCATCAAGAAGGGAATGAGCTGGTCAGCAGGAGATTGG
ATATGCAACGTTTGCCAGAACGTAAACTTCAAAAAAAGAGAAGCATGCCATCGTTGTGCTTACCCCAAGTATGGAGGCCCAGACCCTTCAACTTACAGTTACAACAAGAC
GGAGGCGTTGGCCGGAGACTGGTACTGCACCACCATCAGCTGCGGAGCTCACAATTATGCCAGCCGCCCCAACTGCTTTAGATGTGGTGCATTTAAGTCCGTCTATCCTG
GTGATTATGGCTCCTACATGATCGGTTCCGATCAGTATGGATCTGATGCAAGCATCCCACCTGGATGGAAATCTGGAGACTGGATTTGCCCTAGAATGGGATGCGGAGTA
CATAATTATGCAAGCAGGATGGAGTGTTTTAAATGCAAAACACCAAGAGATTTCGGTGGTGCAGTTTAAAGCG
Protein sequenceShow/hide protein sequence
MSWSAGDWICNVCQNVNFKKREACHRCAYPKYGGPDPSTYSYNKTEALAGDWYCTTISCGAHNYASRPNCFRCGAFKSVYPGDYGSYMIGSDQYGSDASIPPGWKSGDWI
CPRMGCGVHNYASRMECFKCKTPRDFGGAV