CuGenDBv2

Gene ID	Lsi06G009730
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Ribosomal protein
Genome location	chr06:19714657..19716675
RNA-Seq Expression	Lsi06G009730
Synteny	Lsi06G009730
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005840 - ribosome (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR000473 - Ribosomal protein L36 IPR035977 - Ribosomal protein L36 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7023520.1 rpmJ, partial [Cucurbita argyrosperma subsp. argyrosperma]

3.2e-41

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Query:  MKVRASVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRNEVKQEVLPSHSSGRGLASLIPQKQEPTMLPGWRMGLASILLKKHS
        MKVRASVKKMCEFCRTVKRRGRVY+YCSSNPKHKQRQGLST ASEGPSP LF  +EVKQE+LPSHSS  GLASL+PQK EPTML GWRMGLASILLKKH+
Subjt:  MKVRASVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRNEVKQEVLPSHSSGRGLASLIPQKQEPTMLPGWRMGLASILLKKHS

XP_004150587.2 uncharacterized protein LOC101223220 [Cucumis sativus]

2.6e-43

84.4

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Query:  FSDGIGIDAMKVRASVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRNEVKQEVLPSHSSGRGLASLIPQKQEPTMLPGWRMGL
        FS  + I+AMKVR+SVKKMCEFCRTVKR+GRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSR EVKQE+LPS S   GLASLIPQK EPTM  GWRMGL
Subjt:  FSDGIGIDAMKVRASVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRNEVKQEVLPSHSSGRGLASLIPQKQEPTMLPGWRMGL

Query:  ASILLKKHS
        ASILLKKH+
Subjt:  ASILLKKHS

XP_008443993.2 PREDICTED: uncharacterized protein LOC103487446 [Cucumis melo]

1.4e-41

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Query:  MKVRASVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRNEVKQEVLPSHSSGRGLASLIPQKQEPTMLPGWRMGLASILLKKHS
        MKVR+SVKKMCEFCRTVKR+GRVYIYCSSNPKHKQRQGLSTFA EGPSPSLFSR EVKQE+LPS  S  GLASLIPQK EPTML GWRMGLASILLKKH+
Subjt:  MKVRASVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRNEVKQEVLPSHSSGRGLASLIPQKQEPTMLPGWRMGLASILLKKHS

XP_022933442.1 uncharacterized protein LOC111440855 [Cucurbita moschata]

3.2e-41

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Query:  MKVRASVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRNEVKQEVLPSHSSGRGLASLIPQKQEPTMLPGWRMGLASILLKKHS
        MKVRASVKKMCEFCRTV+RRGRVYIYCS+NPKHKQRQGLSTFASE PSPSLFSR+EVKQE+LPSHSS  GLASLIPQK EPTML GWRMGLASIL KK +
Subjt:  MKVRASVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRNEVKQEVLPSHSSGRGLASLIPQKQEPTMLPGWRMGLASILLKKHS

XP_038879717.1 uncharacterized protein LOC120071478 [Benincasa hispida]

1.7e-42

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Query:  MKVRASVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRNEVKQEVLPSHSSGRGLASLIPQKQEPTMLPGWRMGLASILLKKHS
        MKVRASVKKMCEFCRTVKRRGRVY+YCSSNPKHKQRQGLSTFASEGP PSLFSR+EVKQE+LPSHSS  GLASLIPQK EPTML GWRMGLASILLKK +
Subjt:  MKVRASVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRNEVKQEVLPSHSSGRGLASLIPQKQEPTMLPGWRMGLASILLKKHS

TrEMBL top hits

e value

%identity

Alignment

A0A1S3B8W2 Ribosomal protein

6.9e-42

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Query:  MKVRASVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRNEVKQEVLPSHSSGRGLASLIPQKQEPTMLPGWRMGLASILLKKHS
        MKVR+SVKKMCEFCRTVKR+GRVYIYCSSNPKHKQRQGLSTFA EGPSPSLFSR EVKQE+LPS  S  GLASLIPQK EPTML GWRMGLASILLKKH+
Subjt:  MKVRASVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRNEVKQEVLPSHSSGRGLASLIPQKQEPTMLPGWRMGLASILLKKHS

A0A5A7U4L3 Ribosomal protein

6.9e-42

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Query:  MKVRASVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRNEVKQEVLPSHSSGRGLASLIPQKQEPTMLPGWRMGLASILLKKHS
        MKVR+SVKKMCEFCRTVKR+GRVYIYCSSNPKHKQRQGLSTFA EGPSPSLFSR EVKQE+LPS  S  GLASLIPQK EPTML GWRMGLASILLKKH+
Subjt:  MKVRASVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRNEVKQEVLPSHSSGRGLASLIPQKQEPTMLPGWRMGLASILLKKHS

A0A6J1CT08 Ribosomal protein

2.6e-41

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Query:  MKVRASVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRNEVKQEVLPSHSSGRGLASLIPQKQEPTMLPGWRMGLASILLKKHS
        MKVR+SVKKMCEFCRTVKRRGRVY+YCSSNPKHKQRQGLSTFASEGPSP LFSR+EVKQE+LPS+S   GLASLIPQK EPT + GWRMGLASILLKKH+
Subjt:  MKVRASVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRNEVKQEVLPSHSSGRGLASLIPQKQEPTMLPGWRMGLASILLKKHS

A0A6J1EZS5 Ribosomal protein

1.5e-41

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Query:  MKVRASVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRNEVKQEVLPSHSSGRGLASLIPQKQEPTMLPGWRMGLASILLKKHS
        MKVRASVKKMCEFCRTV+RRGRVYIYCS+NPKHKQRQGLSTFASE PSPSLFSR+EVKQE+LPSHSS  GLASLIPQK EPTML GWRMGLASIL KK +
Subjt:  MKVRASVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRNEVKQEVLPSHSSGRGLASLIPQKQEPTMLPGWRMGLASILLKKHS

A0A6J1JBN8 Ribosomal protein

2.0e-41

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Query:  MKVRASVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRNEVKQEVLPSHSSGRGLASLIPQKQEPTMLPGWRMGLASILLKKHS
        MKVRASVKKMCEFCRTVKRRGRVY+YCSSNPKHKQRQGLST ASEGPSP LF  +EVKQE+LPSHSS  GLASL+PQK EPTML GWRMGLASILLKKH+
Subjt:  MKVRASVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRNEVKQEVLPSHSSGRGLASLIPQKQEPTMLPGWRMGLASILLKKHS

SwissProt top hits

e value

%identity

Alignment

A5VLI2 50S ribosomal protein L36

6.7e-10

76.32

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Query:  MKVRASVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQG
        MKVR SVKKMCE C+ VKR GRV + CS+NPKHKQRQG
Subjt:  MKVRASVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQG

B2G8V5 50S ribosomal protein L36

6.7e-10

76.32

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Query:  MKVRASVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQG
        MKVR SVKKMCE C+ VKR GRV + CS+NPKHKQRQG
Subjt:  MKVRASVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQG

B3WAJ5 50S ribosomal protein L36

5.1e-10

76.32

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Query:  MKVRASVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQG
        MKVR SVKKMCE C+ V+R+GRV I CS+NPKHKQRQG
Subjt:  MKVRASVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQG

P73300 50S ribosomal protein L36

1.8e-10

76.32

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Query:  MKVRASVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQG
        MKVRASVKKMC+ CR ++RRGRV + CS+NPKHKQRQG
Subjt:  MKVRASVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQG

Q035A6 50S ribosomal protein L36

5.1e-10

76.32

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Query:  MKVRASVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQG
        MKVR SVKKMCE C+ V+R+GRV I CS+NPKHKQRQG
Subjt:  MKVRASVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQG

Arabidopsis top hits

e value

%identity

Alignment

AT5G20180.1 Ribosomal protein L36

1.2e-27

63.37

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Query:  MKVRASVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPS-LFSRNEVKQEV--LPSHSSGRGLASLIPQKQEPTMLPGWRMGLASILLK
        MKVR+SVKKMCEFC+TVKRRGRVY+ CSSNPKHKQRQG S+FA EG +PS LF+     QE+  LP      GLASL+ ++  PT   GWR GLASIL K
Subjt:  MKVRASVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPS-LFSRNEVKQEV--LPSHSSGRGLASLIPQKQEPTMLPGWRMGLASILLK

Query:  K
        +
Subjt:  K

AT5G20180.2 Ribosomal protein L36

1.2e-27

63.37

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Query:  MKVRASVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPS-LFSRNEVKQEV--LPSHSSGRGLASLIPQKQEPTMLPGWRMGLASILLK
        MKVR+SVKKMCEFC+TVKRRGRVY+ CSSNPKHKQRQG S+FA EG +PS LF+     QE+  LP      GLASL+ ++  PT   GWR GLASIL K
Subjt:  MKVRASVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPS-LFSRNEVKQEV--LPSHSSGRGLASLIPQKQEPTMLPGWRMGLASILLK

Query:  K
        +
Subjt:  K

ATCG00760.1 ribosomal protein L36

5.8e-09

65.79

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Query:  MKVRASVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQG
        MK+RASV+K+CE CR ++RRGR+ + C SNP+HKQRQG
Subjt:  MKVRASVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQG

Sequences

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CDS sequence

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mRNA sequence

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AACGAAATTCCATACCGTGTTCAAACGTTCATCTCAGCTGCTGGCCGTCGCTCTCGATTCCAAGGTATTACGCTAAGAAATCATTCATCTTCTCAGTTAAGCTTTGCCTC
AACACTATATCAGAGACAACCTTGCGATCATGATCTAATTTATTGTGTCCTTACTATTTTCCTTCATTTCAGTGATGGAATTGGAATTGACGCCATGAAAGTCCGTGCTT
CAGTGAAAAAGATGTGCGAGTTTTGTAGGACAGTTAAGCGTCGAGGCCGAGTATATATATACTGTTCATCCAATCCCAAACACAAGCAACGCCAAGGCCTATCTACATTT
GCAAGTGAAGGTCCTTCTCCTTCCTTGTTCTCAAGAAATGAGGTGAAGCAAGAGGTTCTTCCCAGTCATAGCTCGGGAAGGGGGCTGGCTTCTCTCATCCCCCAAAAGCA
AGAGCCAACAATGTTGCCTGGTTGGAGAATGGGTCTGGCTTCAATCCTGTTGAAGAAACACAGTTAGCTTAGTAAACAAAAGGAAATCGATATCTGAGTGCCATGGCAAT
CCTACCAATATAGATTATTACTTATTGGTTCGTCTTTGACTTTCATTTGCAATATCCGTATTTACAACAAGGATTCTGCTTCTAAAAAGAAATAAGCACTGCTACTCTGA
GTTTTGTTCTGTTTGAGTTGGTTTTGATACGTAGAATTGGAGGAAGAGAAGGTGTTACATTGGATATCGTAATTGTGTTAATTGTTTGGTTATTGTTTTATTCCTTTCTA
CACTCCAATCTTTGTCAATTGTCATTTTCATTTTCAGCTCCAGACCAGAGAGTCAGTGATCTGCTAGCCATCTGCTATGTTGTGATTTTCAATCCTTAATTTTCCTCTAT
ATAATTCTTACATCTTCCAATATATAATTAATTAAGTTGTATGCTAAAACGAGCATAGTTATGTACTATATTATCTCAACCTTGAAGTTAGAGGCTCAATTTTTCTATTC
ACATATTGTCAAATAAAAGTTTAAATTATAT

Protein sequence

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NEIPYRVQTFISAAGRRSRFQGITLRNHSSSQLSFASTLYQRQPCDHDLIYCVLTIFLHFSDGIGIDAMKVRASVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTF
ASEGPSPSLFSRNEVKQEVLPSHSSGRGLASLIPQKQEPTMLPGWRMGLASILLKKHS

Lsi06G009730 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome