; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi06G009920 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi06G009920
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionAuxin-responsive protein
Genome locationchr06:19935478..19936834
RNA-Seq ExpressionLsi06G009920
SyntenyLsi06G009920
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0006487 - protein N-linked glycosylation (biological process)
GO:0009734 - auxin-activated signaling pathway (biological process)
GO:0005634 - nucleus (cellular component)
GO:0016020 - membrane (cellular component)
GO:0003830 - beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity (molecular function)
InterPro domainsIPR003311 - AUX/IAA protein
IPR033389 - AUX/IAA domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN65132.1 hypothetical protein Csa_023489 [Cucumis sativus]2.4e-5978.21Show/hide
Query:  MSMELQLGLALIPTNPSKPFDLLDTHHTNPLSFDFHSITHKKRSRHFDSSAAFRRTLPLLLWNDHPNNDDDDDFNDPHSASSNDSDEEEERENGLVGWPP
        M+MELQLGLALIPTNP KPFD L+TH+ NP+S  F SI HKKRSRH DS A FR+TLPLLLWNDHPN+ DDDD NDPHSASSNDSDEEEE ENGLVGWPP
Subjt:  MSMELQLGLALIPTNPSKPFDLLDTHHTNPLSFDFHSITHKKRSRHFDSSAAFRRTLPLLLWNDHPNNDDDDDFNDPHSASSNDSDEEEERENGLVGWPP

Query:  LKKRRKSLFMQKRLGRGTVIRRPAVENGGGFYRGLNSNYSRYVKVKMDGVGIARKM
        LKKRRKSLFM++ +GR  VIRRPAV+N G F+RGL+ N SRYVKVKM+GVGIARK+
Subjt:  LKKRRKSLFMQKRLGRGTVIRRPAVENGGGFYRGLNSNYSRYVKVKMDGVGIARKM

XP_004150206.2 auxin-responsive protein IAA29 [Cucumis sativus]2.4e-5978.21Show/hide
Query:  MSMELQLGLALIPTNPSKPFDLLDTHHTNPLSFDFHSITHKKRSRHFDSSAAFRRTLPLLLWNDHPNNDDDDDFNDPHSASSNDSDEEEERENGLVGWPP
        M+MELQLGLALIPTNP KPFD L+TH+ NP+S  F SI HKKRSRH DS A FR+TLPLLLWNDHPN+ DDDD NDPHSASSNDSDEEEE ENGLVGWPP
Subjt:  MSMELQLGLALIPTNPSKPFDLLDTHHTNPLSFDFHSITHKKRSRHFDSSAAFRRTLPLLLWNDHPNNDDDDDFNDPHSASSNDSDEEEERENGLVGWPP

Query:  LKKRRKSLFMQKRLGRGTVIRRPAVENGGGFYRGLNSNYSRYVKVKMDGVGIARKM
        LKKRRKSLFM++ +GR  VIRRPAV+N G F+RGL+ N SRYVKVKM+GVGIARK+
Subjt:  LKKRRKSLFMQKRLGRGTVIRRPAVENGGGFYRGLNSNYSRYVKVKMDGVGIARKM

XP_008443966.1 PREDICTED: auxin-responsive protein IAA29-like [Cucumis melo]4.3e-5677.22Show/hide
Query:  MSMELQLGLALIPTNPSKPFDLLDTHHTNPLSFDFHSITHKKRSRHFDSSAAF-RRTLPLLLWNDHPNNDDDDDFNDPHSASSNDSD-EEEERENGLVGW
        M+MELQLGLALIPTNP KPFD L+TH+ NP+S  F SI HKKRSRH DSS  F R TLPLLLWNDHPN+ D DD NDP SASSNDSD EEEERENGLVGW
Subjt:  MSMELQLGLALIPTNPSKPFDLLDTHHTNPLSFDFHSITHKKRSRHFDSSAAF-RRTLPLLLWNDHPNNDDDDDFNDPHSASSNDSD-EEEERENGLVGW

Query:  PPLKKRRKSLFMQKRLGRGTVIRRPAVENGGGFYRGLNSNYSRYVKVKMDGVGIARKM
        PPLKKRRKSLFM++ +GR  VIRRPAV+N GGF+RGL+ N SRYVKVKM+GVGIARK+
Subjt:  PPLKKRRKSLFMQKRLGRGTVIRRPAVENGGGFYRGLNSNYSRYVKVKMDGVGIARKM

XP_023515749.1 uncharacterized protein LOC111779818 isoform X2 [Cucurbita pepo subsp. pepo]1.3e-4970.51Show/hide
Query:  MSMELQLGLALIPTNPSKPFDLLDTHHTNPLSFDFHSITHKKRSRHFDSSAAFRRTLPLLLWNDHPNNDDDDDFNDPHSASSNDSDEEEERENGLVGWPP
        M+MELQL LAL PTNP+KPFD L+THH     FDF SI+ KKR    D S+AFRRTLPLLLWNDHPNNDDDD  NDP+SASSN  +  EE+E  LVGWPP
Subjt:  MSMELQLGLALIPTNPSKPFDLLDTHHTNPLSFDFHSITHKKRSRHFDSSAAFRRTLPLLLWNDHPNNDDDDDFNDPHSASSNDSDEEEERENGLVGWPP

Query:  LKKRRKSLFMQKRLGRGTVIRRPAVENGGGFYRGLNSNYSRYVKVKMDGVGIARKM
        LKKRRK+LF+QKR+GR   IRRPA EN GG YR LN N SRYVKVKM+GVGI RK+
Subjt:  LKKRRKSLFMQKRLGRGTVIRRPAVENGGGFYRGLNSNYSRYVKVKMDGVGIARKM

XP_038879327.1 auxin-responsive protein IAA29-like [Benincasa hispida]2.7e-6684.28Show/hide
Query:  MSMELQLGLALIPTNPSKPFDLLDTHHT---NPLSFDFHSITHKKRSRHFDSSAAFRRTLPLLLWNDHPNNDDDDDFNDPHSASSNDSDEEEERENGLVG
        M+MELQLGLAL PTNP KPFD L+THH    NPL FDF SITHKKRSR F+ SAAFRRTLPLLLWNDHPN+ DDDD NDPHSASSNDSDEEEERENGLVG
Subjt:  MSMELQLGLALIPTNPSKPFDLLDTHHT---NPLSFDFHSITHKKRSRHFDSSAAFRRTLPLLLWNDHPNNDDDDDFNDPHSASSNDSDEEEERENGLVG

Query:  WPPLKKRRKSLFMQKRLGRGTVIRRPAVENGGGFYRGLNSNYSRYVKVKMDGVGIARKM
        WPPLKKRRKSLFM+K +GR  VIRRP VENGGGFYRGLNSNYSRYVKVKM+GVGIARK+
Subjt:  WPPLKKRRKSLFMQKRLGRGTVIRRPAVENGGGFYRGLNSNYSRYVKVKMDGVGIARKM

TrEMBL top hitse value%identityAlignment
A0A0A0LWC5 Auxin-responsive protein1.2e-5978.21Show/hide
Query:  MSMELQLGLALIPTNPSKPFDLLDTHHTNPLSFDFHSITHKKRSRHFDSSAAFRRTLPLLLWNDHPNNDDDDDFNDPHSASSNDSDEEEERENGLVGWPP
        M+MELQLGLALIPTNP KPFD L+TH+ NP+S  F SI HKKRSRH DS A FR+TLPLLLWNDHPN+ DDDD NDPHSASSNDSDEEEE ENGLVGWPP
Subjt:  MSMELQLGLALIPTNPSKPFDLLDTHHTNPLSFDFHSITHKKRSRHFDSSAAFRRTLPLLLWNDHPNNDDDDDFNDPHSASSNDSDEEEERENGLVGWPP

Query:  LKKRRKSLFMQKRLGRGTVIRRPAVENGGGFYRGLNSNYSRYVKVKMDGVGIARKM
        LKKRRKSLFM++ +GR  VIRRPAV+N G F+RGL+ N SRYVKVKM+GVGIARK+
Subjt:  LKKRRKSLFMQKRLGRGTVIRRPAVENGGGFYRGLNSNYSRYVKVKMDGVGIARKM

A0A1S3B8T8 Auxin-responsive protein2.1e-5677.22Show/hide
Query:  MSMELQLGLALIPTNPSKPFDLLDTHHTNPLSFDFHSITHKKRSRHFDSSAAF-RRTLPLLLWNDHPNNDDDDDFNDPHSASSNDSD-EEEERENGLVGW
        M+MELQLGLALIPTNP KPFD L+TH+ NP+S  F SI HKKRSRH DSS  F R TLPLLLWNDHPN+ D DD NDP SASSNDSD EEEERENGLVGW
Subjt:  MSMELQLGLALIPTNPSKPFDLLDTHHTNPLSFDFHSITHKKRSRHFDSSAAF-RRTLPLLLWNDHPNNDDDDDFNDPHSASSNDSD-EEEERENGLVGW

Query:  PPLKKRRKSLFMQKRLGRGTVIRRPAVENGGGFYRGLNSNYSRYVKVKMDGVGIARKM
        PPLKKRRKSLFM++ +GR  VIRRPAV+N GGF+RGL+ N SRYVKVKM+GVGIARK+
Subjt:  PPLKKRRKSLFMQKRLGRGTVIRRPAVENGGGFYRGLNSNYSRYVKVKMDGVGIARKM

A0A6J1F6G3 Auxin-responsive protein4.0e-3663.46Show/hide
Query:  MELQLGLALIPTNPSKPFDLLDT--HHTNPLSFDFHSITHKKRSRHFDSSAAFRRTLPLLLWNDHPNNDDDDDFNDPHSASSNDSDEEEERENGLVGWPP
        MELQLGL+LI   P+KPFDL ++   H      D +S   KKR  H D S AFRRTLPLLLWNDHPNN DDDD NDPHSAS++  +EEEE +N LVGWPP
Subjt:  MELQLGLALIPTNPSKPFDLLDT--HHTNPLSFDFHSITHKKRSRHFDSSAAFRRTLPLLLWNDHPNNDDDDDFNDPHSASSNDSDEEEERENGLVGWPP

Query:  LKKRRKSLFMQKRLGRGTVIRRPAVENGGGFYRGLNSNYSRYVKVKMDGVGIARKM
        LKKR+    MQKR GRG    RPAV NGGG     NSN SRYVKVKM+GVGI RK+
Subjt:  LKKRRKSLFMQKRLGRGTVIRRPAVENGGGFYRGLNSNYSRYVKVKMDGVGIARKM

A0A6J1HA19 Auxin-responsive protein5.4e-4969.87Show/hide
Query:  MSMELQLGLALIPTNPSKPFDLLDTHHTNPLSFDFHSITHKKRSRHFDSSAAFRRTLPLLLWNDHPNNDDDDDFNDPHSASSNDSDEEEERENGLVGWPP
        M+MELQL LAL PTNP+KPFD L+THH      DF SI+ KKR    D S+AFRRTLPLLLWNDHPNN DDD  N P+SASSN  D  EE+E  LVGWPP
Subjt:  MSMELQLGLALIPTNPSKPFDLLDTHHTNPLSFDFHSITHKKRSRHFDSSAAFRRTLPLLLWNDHPNNDDDDDFNDPHSASSNDSDEEEERENGLVGWPP

Query:  LKKRRKSLFMQKRLGRGTVIRRPAVENGGGFYRGLNSNYSRYVKVKMDGVGIARKM
        LKKRRK+LF+QKR+GR   IRRPA+EN GG YR LNSN SRYVKVKM+GVGI RK+
Subjt:  LKKRRKSLFMQKRLGRGTVIRRPAVENGGGFYRGLNSNYSRYVKVKMDGVGIARKM

A0A6J1JF88 Auxin-responsive protein1.0e-4769.23Show/hide
Query:  MSMELQLGLALIPTNPSKPFDLLDTHHTNPLSFDFHSITHKKRSRHFDSSAAFRRTLPLLLWNDHPNNDDDDDFNDPHSASSNDSDEEEERENGLVGWPP
        M+MELQLGLAL PTNP+KPF  L+THH      DF SI+ KKR    D S+AFRRTLPLLLWNDHP ND DDD NDP+SASSN  D  +E+E  LVGWPP
Subjt:  MSMELQLGLALIPTNPSKPFDLLDTHHTNPLSFDFHSITHKKRSRHFDSSAAFRRTLPLLLWNDHPNNDDDDDFNDPHSASSNDSDEEEERENGLVGWPP

Query:  LKKRRKSLFMQKRLGRGTVIRRPAVENGGGFYRGLNSNYSRYVKVKMDGVGIARKM
        LKKRRK+LF+QKR+ R  VIRRPA+ENGGG +R LNSN S YVKVKM+GVGI RK+
Subjt:  LKKRRKSLFMQKRLGRGTVIRRPAVENGGGFYRGLNSNYSRYVKVKMDGVGIARKM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTATGGAGCTTCAACTGGGCCTTGCTTTAATCCCCACCAATCCCAGCAAACCCTTCGACTTATTAGACACCCATCACACCAATCCCCTTTCTTTCGATTTCCATTC
CATCACTCACAAAAAGCGTTCTCGTCATTTCGACTCCTCTGCGGCATTTCGTCGAACACTTCCTCTGCTTCTCTGGAATGACCATCCCAATAATGACGATGACGACGATT
TTAATGACCCCCATTCCGCTTCCTCTAATGATTCAGACGAGGAGGAGGAACGGGAGAATGGGCTTGTGGGATGGCCGCCGCTTAAGAAGAGGAGGAAGAGTCTTTTCATG
CAGAAACGCCTCGGACGGGGCACGGTGATCCGACGTCCGGCGGTGGAGAACGGTGGCGGGTTTTACAGAGGATTGAACTCGAATTATTCTCGATACGTGAAGGTGAAGAT
GGATGGAGTGGGAATTGCTAGGAAGATGAAACGGATTCCGACGGTTACAGACTCAAATACCAGAATATCGACGGTGACTGGGATTTCATCGGAAATGTTCAACGGATCAA
ACTGGAAAAGAAGAGCGACTGATGAGGGGTTACCGGCGGAGGCGGTCAGAGAATCAGATGCTGTCTAA
mRNA sequenceShow/hide mRNA sequence
CAATGTGAGTGATAAAAAAGGAACATCAGGGCAACTGGGTCGGCCAAAGCCAGAGCATTGATACGGACATCTTAGACGTTTTTCGCCTCACTCTCCAACACTTTGTCCCC
ATCCTCATTCTTGTCCCACAGCCCGCACGCACGACCCCTTCTCCTTTTAATCCCCCCCTCTTCCTCATCACCAACAACACCCACATCTCTCTTCAATTCTCTATATTCAA
TCATCTTTCTTCTTTTCCTGTTACTTAATACATATGTCTATGGAGCTTCAACTGGGCCTTGCTTTAATCCCCACCAATCCCAGCAAACCCTTCGACTTATTAGACACCCA
TCACACCAATCCCCTTTCTTTCGATTTCCATTCCATCACTCACAAAAAGCGTTCTCGTCATTTCGACTCCTCTGCGGCATTTCGTCGAACACTTCCTCTGCTTCTCTGGA
ATGACCATCCCAATAATGACGATGACGACGATTTTAATGACCCCCATTCCGCTTCCTCTAATGATTCAGACGAGGAGGAGGAACGGGAGAATGGGCTTGTGGGATGGCCG
CCGCTTAAGAAGAGGAGGAAGAGTCTTTTCATGCAGAAACGCCTCGGACGGGGCACGGTGATCCGACGTCCGGCGGTGGAGAACGGTGGCGGGTTTTACAGAGGATTGAA
CTCGAATTATTCTCGATACGTGAAGGTGAAGATGGATGGAGTGGGAATTGCTAGGAAGATGAAACGGATTCCGACGGTTACAGACTCAAATACCAGAATATCGACGGTGA
CTGGGATTTCATCGGAAATGTTCAACGGATCAAACTGGAAAAGAAGAGCGACTGATGAGGGGTTACCGGCGGAGGCGGTCAGAGAATCAGATGCTGTCTAATTAATTAAA
TAGATTTCTATCTATTTTGTTTTGTTTTGTTTTGTTTTTTTTTTTTTTTT
Protein sequenceShow/hide protein sequence
MSMELQLGLALIPTNPSKPFDLLDTHHTNPLSFDFHSITHKKRSRHFDSSAAFRRTLPLLLWNDHPNNDDDDDFNDPHSASSNDSDEEEERENGLVGWPPLKKRRKSLFM
QKRLGRGTVIRRPAVENGGGFYRGLNSNYSRYVKVKMDGVGIARKMKRIPTVTDSNTRISTVTGISSEMFNGSNWKRRATDEGLPAEAVRESDAV