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Lsi06G010080 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi06G010080
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUPF0481 protein At3g47200-like
Genome locationchr06:20170361..20171054
RNA-Seq ExpressionLsi06G010080
SyntenyLsi06G010080
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064941.1 UPF0481 protein [Cucumis melo var. makuwa]1.1e-0877.27Show/hide
Query:  QVQASLKHNYFNTPWALISFSATTFLILLTILQTIFSVIAAFPN
        + +ASLKHNYFNTPWA+ISF A  FLI+LTILQTIFS I+AFPN
Subjt:  QVQASLKHNYFNTPWALISFSATTFLILLTILQTIFSVIAAFPN

KAE8652198.1 hypothetical protein Csa_022607, partial [Cucumis sativus]8.7e-0946.51Show/hide
Query:  NNKHINEENTKKKPWIQPPPISELYEVDVTIKKIYALQWMVEQVQASLKHNYFNTPWALISFSATTFLILLTILQTIFSVIAAFPN
        ++K I E       ++  P  S   ++   ++K    +W   +  ASLKHNYFNTPWA+ISF A T LI LTILQTIFS I+ FPN
Subjt:  NNKHINEENTKKKPWIQPPPISELYEVDVTIKKIYALQWMVEQVQASLKHNYFNTPWALISFSATTFLILLTILQTIFSVIAAFPN

XP_011650198.1 UPF0481 protein At3g47200 [Cucumis sativus]8.7e-0946.51Show/hide
Query:  NNKHINEENTKKKPWIQPPPISELYEVDVTIKKIYALQWMVEQVQASLKHNYFNTPWALISFSATTFLILLTILQTIFSVIAAFPN
        ++K I E       ++  P  S   ++   ++K    +W   +  ASLKHNYFNTPWA+ISF A T LI LTILQTIFS I+ FPN
Subjt:  NNKHINEENTKKKPWIQPPPISELYEVDVTIKKIYALQWMVEQVQASLKHNYFNTPWALISFSATTFLILLTILQTIFSVIAAFPN

XP_031737062.1 UPF0481 protein At3g47200 [Cucumis sativus]8.7e-0977.27Show/hide
Query:  QVQASLKHNYFNTPWALISFSATTFLILLTILQTIFSVIAAFPN
        + +ASLKH+YFNTPWA+ISF A TFLI+LTILQTIFS I+AFPN
Subjt:  QVQASLKHNYFNTPWALISFSATTFLILLTILQTIFSVIAAFPN

XP_038890800.1 UPF0481 protein At3g47200-like [Benincasa hispida]9.3e-1129.31Show/hide
Query:  ISKYEICYELLEEPTHLVDFFCFHFFPLPHRDINNKHINEENTKKKPWIQPPPISELYEVDVTIKKI---------------------------------
        + KYEI  +L +EP HLVD   F+F PLP  D+ NKH   +N ++  WI PP I+EL E  VTIKK                                  
Subjt:  ISKYEICYELLEEPTHLVDFFCFHFFPLPHRDINNKHINEENTKKKPWIQPPPISELYEVDVTIKKI---------------------------------

Query:  --------------YALQWMV------------------------------------------------------------------EQVQASLKHNYFN
                      Y +Q+++                                                                   + +ASLKHNYFN
Subjt:  --------------YALQWMV------------------------------------------------------------------EQVQASLKHNYFN

Query:  TPWALISFSATTFLILLTILQTIFSVIAAFPN
        TPWA IS  A + LILLTILQTIFS I+AFP+
Subjt:  TPWALISFSATTFLILLTILQTIFSVIAAFPN

TrEMBL top hitse value%identityAlignment
A0A0A0LPJ5 Uncharacterized protein4.2e-0946.51Show/hide
Query:  NNKHINEENTKKKPWIQPPPISELYEVDVTIKKIYALQWMVEQVQASLKHNYFNTPWALISFSATTFLILLTILQTIFSVIAAFPN
        ++K I E       ++  P  S   ++   ++K    +W   +  ASLKHNYFNTPWA+ISF A T LI LTILQTIFS I+ FPN
Subjt:  NNKHINEENTKKKPWIQPPPISELYEVDVTIKKIYALQWMVEQVQASLKHNYFNTPWALISFSATTFLILLTILQTIFSVIAAFPN

A0A0A0LQ57 Uncharacterized protein4.2e-0977.27Show/hide
Query:  QVQASLKHNYFNTPWALISFSATTFLILLTILQTIFSVIAAFPN
        + +ASLKH+YFNTPWA+ISF A TFLI+LTILQTIFS I+AFPN
Subjt:  QVQASLKHNYFNTPWALISFSATTFLILLTILQTIFSVIAAFPN

A0A1S4DVI1 UPF0481 protein At3g47200-like5.5e-0977.27Show/hide
Query:  QVQASLKHNYFNTPWALISFSATTFLILLTILQTIFSVIAAFPN
        + +ASLKHNYFNTPWA+ISF A  FLI+LTILQTIFS I+AFPN
Subjt:  QVQASLKHNYFNTPWALISFSATTFLILLTILQTIFSVIAAFPN

A0A1S4DW65 UPF0481 protein At3g47200-like9.4e-0945.35Show/hide
Query:  NNKHINEENTKKKPWIQPPPISELYEVDVTIKKIYALQWMVEQVQASLKHNYFNTPWALISFSATTFLILLTILQTIFSVIAAFPN
        ++K I E   +   ++  P  S   +++  ++     +W     +ASLKHNYFNTPWA+ISF A TFLI+LTILQTIFS I+ F N
Subjt:  NNKHINEENTKKKPWIQPPPISELYEVDVTIKKIYALQWMVEQVQASLKHNYFNTPWALISFSATTFLILLTILQTIFSVIAAFPN

A0A5A7VGS6 UPF0481 protein5.5e-0977.27Show/hide
Query:  QVQASLKHNYFNTPWALISFSATTFLILLTILQTIFSVIAAFPN
        + +ASLKHNYFNTPWA+ISF A  FLI+LTILQTIFS I+AFPN
Subjt:  QVQASLKHNYFNTPWALISFSATTFLILLTILQTIFSVIAAFPN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G50120.1 Plant protein of unknown function (DUF247)1.6e-0536.51Show/hide
Query:  SELYEVDVTIKKIYALQWMVEQVQASLKHNYFNTPWALISFSATTFLILLTILQTIFSVIAAF
        S L  + + + + Y  +W     +A+LKH YFN PWA++SF A   L++LT  Q+ ++V A +
Subjt:  SELYEVDVTIKKIYALQWMVEQVQASLKHNYFNTPWALISFSATTFLILLTILQTIFSVIAAF

AT3G50130.1 Plant protein of unknown function (DUF247)6.2e-0537.88Show/hide
Query:  PPISELYEVDVTIKKIYALQWMVEQVQASLKHNYFNTPWALISFSATTFLILLTILQTIFSVIAAF
        P  S L ++   + + Y+ +W V  ++A LKH YFN PWA  SF A   L++LT+ Q+ F+    F
Subjt:  PPISELYEVDVTIKKIYALQWMVEQVQASLKHNYFNTPWALISFSATTFLILLTILQTIFSVIAAF

AT3G50140.1 Plant protein of unknown function (DUF247)4.8e-0541.07Show/hide
Query:  LYEVDVTIKKIYALQWMVEQVQASLKHNYFNTPWALISFSATTFLILLTILQTIFS
        L E+   + + Y  +W V  ++A+LKH YF+ PWA  SF A   L+LLT+ Q+ F+
Subjt:  LYEVDVTIKKIYALQWMVEQVQASLKHNYFNTPWALISFSATTFLILLTILQTIFS

AT3G50150.1 Plant protein of unknown function (DUF247)4.8e-0534.72Show/hide
Query:  KPWIQPPPISELYEVDVTIKKIYALQWMVEQVQASLKHNYFNTPWALISFSATTFLILLTILQTIFSVIAAF
        K  I  P    L ++   + + Y+ +W    ++A+L+  YFN PWA  SFSA   L+ LT  Q+ F+V A +
Subjt:  KPWIQPPPISELYEVDVTIKKIYALQWMVEQVQASLKHNYFNTPWALISFSATTFLILLTILQTIFSVIAAF

AT3G50170.1 Plant protein of unknown function (DUF247)1.9e-0640.58Show/hide
Query:  PPISELYEVDVTIKKIYALQWMVEQVQASLKHNYFNTPWALISFSATTFLILLTILQTIFSVIAAF-PN
        P  S L  +   + + Y  +W V  ++A+L H YFN PWA  SFSA   L+LLT+ Q+ ++V A + PN
Subjt:  PPISELYEVDVTIKKIYALQWMVEQVQASLKHNYFNTPWALISFSATTFLILLTILQTIFSVIAAF-PN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTTATAAGTAAATATGAAATTTGTTATGAGTTGTTGGAAGAACCAACCCACTTAGTGGATTTCTTCTGCTTCCACTTCTTTCCCTTACCTCATCGTGATATCAACAACAA
ACACATCAATGAGGAAAACACTAAGAAAAAGCCATGGATTCAGCCTCCACCGATATCTGAGCTCTACGAGGTTGATGTCACCATCAAGAAAATTTATGCACTACAATGGA
TGGTGGAACAAGTCCAAGCTTCACTCAAACATAACTATTTCAATACGCCATGGGCTTTGATCTCCTTCTCTGCTACAACCTTCCTCATTCTTCTCACCATCCTTCAAACC
ATATTCTCTGTTATAGCTGCATTTCCTAAC
mRNA sequenceShow/hide mRNA sequence
TTTATAAGTAAATATGAAATTTGTTATGAGTTGTTGGAAGAACCAACCCACTTAGTGGATTTCTTCTGCTTCCACTTCTTTCCCTTACCTCATCGTGATATCAACAACAA
ACACATCAATGAGGAAAACACTAAGAAAAAGCCATGGATTCAGCCTCCACCGATATCTGAGCTCTACGAGGTTGATGTCACCATCAAGAAAATTTATGCACTACAATGGA
TGGTGGAACAAGTCCAAGCTTCACTCAAACATAACTATTTCAATACGCCATGGGCTTTGATCTCCTTCTCTGCTACAACCTTCCTCATTCTTCTCACCATCCTTCAAACC
ATATTCTCTGTTATAGCTGCATTTCCTAAC
Protein sequenceShow/hide protein sequence
FISKYEICYELLEEPTHLVDFFCFHFFPLPHRDINNKHINEENTKKKPWIQPPPISELYEVDVTIKKIYALQWMVEQVQASLKHNYFNTPWALISFSATTFLILLTILQT
IFSVIAAFPN