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Lsi06G010240 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi06G010240
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Genome locationchr06:20408147..20408416
RNA-Seq ExpressionLsi06G010240
SyntenyLsi06G010240
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050063.1 hypothetical protein E6C27_scaffold675G00440 [Cucumis melo var. makuwa]9.6e-1345.79Show/hide
Query:  LILVFLGCIAIFTQPATAR----TAAAPTQFDPFVTEDISFFPCISF----------------APHPACCKAISKMSHCSSSFFNGIPSADIILIKSVCA
        L L+ L CIAI     TAR     AA P      +++D S FPCISF                APHP+CC+AIS++  CSS F   IPS D+IL+KS+CA
Subjt:  LILVFLGCIAIFTQPATAR----TAAAPTQFDPFVTEDISFFPCISF----------------APHPACCKAISKMSHCSSSFFNGIPSADIILIKSVCA

Query:  SWGAPIS
        SWG  IS
Subjt:  SWGAPIS

KAA0050081.1 hypothetical protein E6C27_scaffold675G00650 [Cucumis melo var. makuwa]9.0e-2766.04Show/hide
Query:  MNLILVFLGCIAIFTQPATA-RTAAAPTQFDPFVTEDISFFPCISF----------------APHPACCKAISKMSHCSSSFFNGIPSADIILIKSVCAS
        M LIL+FL C AIFT PA A + A APTQ DPF+TEDISFFPC SF                APHP CCKAISK+  CSSSFFNGIPSAD+ILIKSVC S
Subjt:  MNLILVFLGCIAIFTQPATA-RTAAAPTQFDPFVTEDISFFPCISF----------------APHPACCKAISKMSHCSSSFFNGIPSADIILIKSVCAS

Query:  WGAPIS
        WGA IS
Subjt:  WGAPIS

KAE8653021.1 hypothetical protein Csa_004567 [Cucumis sativus]8.7e-1450Show/hide
Query:  MNLILVFLGCIAIFTQPATARTAA-APTQFDPFVTEDISFFPCISF----------------APHPACCKAISKMSHCSSSFFNGIPSADIILIKSVCAS
        M L LVFL CIAI      A T A AP   DPF  E+ S   C SF                APHP+CCKA SK++ CSS F  GIPSAD+ILIK +CA 
Subjt:  MNLILVFLGCIAIFTQPATARTAA-APTQFDPFVTEDISFFPCISF----------------APHPACCKAISKMSHCSSSFFNGIPSADIILIKSVCAS

Query:  WG
        WG
Subjt:  WG

KGN65096.1 hypothetical protein Csa_004577 [Cucumis sativus]2.4e-2462.26Show/hide
Query:  MNLILVFLGCIAIFTQPATA-RTAAAPTQFDPFVTEDISFFPCISFAP----------------HPACCKAISKMSHCSSSFFNGIPSADIILIKSVCAS
        M LILVF+ C AIF  PA A + A APTQ  PF TEDISFFPC SF P                HP CCKAISK+  CSSSFFNGIPSAD+I+IKSVC S
Subjt:  MNLILVFLGCIAIFTQPATA-RTAAAPTQFDPFVTEDISFFPCISFAP----------------HPACCKAISKMSHCSSSFFNGIPSADIILIKSVCAS

Query:  WGAPIS
        WGA IS
Subjt:  WGAPIS

TYK10345.1 hypothetical protein E5676_scaffold367G00210 [Cucumis melo var. makuwa]8.7e-1448.6Show/hide
Query:  LILVFLGCIAIFTQPATAR----TAAAPTQFDPFVTEDISFFPCISF----------------APHPACCKAISKMSHCSSSFFNGIPSADIILIKSVCA
        L LV L CIAI     TAR     AA PT      +ED S FPCISF                APHP+CC+AIS++  CSS F   IPS+D+IL+KS+CA
Subjt:  LILVFLGCIAIFTQPATAR----TAAAPTQFDPFVTEDISFFPCISF----------------APHPACCKAISKMSHCSSSFFNGIPSADIILIKSVCA

Query:  SWGAPIS
        SWG  IS
Subjt:  SWGAPIS

TrEMBL top hitse value%identityAlignment
A0A0A0LYQ3 Uncharacterized protein1.2e-2462.26Show/hide
Query:  MNLILVFLGCIAIFTQPATA-RTAAAPTQFDPFVTEDISFFPCISFAP----------------HPACCKAISKMSHCSSSFFNGIPSADIILIKSVCAS
        M LILVF+ C AIF  PA A + A APTQ  PF TEDISFFPC SF P                HP CCKAISK+  CSSSFFNGIPSAD+I+IKSVC S
Subjt:  MNLILVFLGCIAIFTQPATA-RTAAAPTQFDPFVTEDISFFPCISFAP----------------HPACCKAISKMSHCSSSFFNGIPSADIILIKSVCAS

Query:  WGAPIS
        WGA IS
Subjt:  WGAPIS

A0A5A7U2D8 Uncharacterized protein4.7e-1345.79Show/hide
Query:  LILVFLGCIAIFTQPATAR----TAAAPTQFDPFVTEDISFFPCISF----------------APHPACCKAISKMSHCSSSFFNGIPSADIILIKSVCA
        L L+ L CIAI     TAR     AA P      +++D S FPCISF                APHP+CC+AIS++  CSS F   IPS D+IL+KS+CA
Subjt:  LILVFLGCIAIFTQPATAR----TAAAPTQFDPFVTEDISFFPCISF----------------APHPACCKAISKMSHCSSSFFNGIPSADIILIKSVCA

Query:  SWGAPIS
        SWG  IS
Subjt:  SWGAPIS

A0A5A7U904 Uncharacterized protein4.3e-2766.04Show/hide
Query:  MNLILVFLGCIAIFTQPATA-RTAAAPTQFDPFVTEDISFFPCISF----------------APHPACCKAISKMSHCSSSFFNGIPSADIILIKSVCAS
        M LIL+FL C AIFT PA A + A APTQ DPF+TEDISFFPC SF                APHP CCKAISK+  CSSSFFNGIPSAD+ILIKSVC S
Subjt:  MNLILVFLGCIAIFTQPATA-RTAAAPTQFDPFVTEDISFFPCISF----------------APHPACCKAISKMSHCSSSFFNGIPSADIILIKSVCAS

Query:  WGAPIS
        WGA IS
Subjt:  WGAPIS

A0A5D3CFS6 Uncharacterized protein4.2e-1448.6Show/hide
Query:  LILVFLGCIAIFTQPATAR----TAAAPTQFDPFVTEDISFFPCISF----------------APHPACCKAISKMSHCSSSFFNGIPSADIILIKSVCA
        L LV L CIAI     TAR     AA PT      +ED S FPCISF                APHP+CC+AIS++  CSS F   IPS+D+IL+KS+CA
Subjt:  LILVFLGCIAIFTQPATAR----TAAAPTQFDPFVTEDISFFPCISF----------------APHPACCKAISKMSHCSSSFFNGIPSADIILIKSVCA

Query:  SWGAPIS
        SWG  IS
Subjt:  SWGAPIS

A0A5D3CG41 Uncharacterized protein4.7e-1347.06Show/hide
Query:  MNLILVFLGCIAIFTQPATART-AAAPTQFDPFVTEDISFFPCISF----------------APHPACCKAISKMSHCSSSFFNGIPSADIILIKSVCAS
        + L LVF  C+AI      A T AAAP+  DPF  E++S   C SF                APHP+CCKA SK++ CS  F  GIPSAD+ILIK +CA 
Subjt:  MNLILVFLGCIAIFTQPATART-AAAPTQFDPFVTEDISFFPCISF----------------APHPACCKAISKMSHCSSSFFNGIPSADIILIKSVCAS

Query:  WG
        WG
Subjt:  WG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATCTAATCCTCGTATTCCTAGGCTGTATAGCCATTTTCACACAACCAGCGACGGCTCGCACGGCGGCGGCGCCAACTCAATTTGATCCATTCGTAACAGAGGATAT
CTCTTTTTTCCCCTGTATTTCATTTGCTCCTCATCCCGCTTGTTGCAAGGCCATTTCTAAGATGAGCCATTGTTCTTCATCGTTTTTCAATGGCATTCCTTCTGCTGATA
TAATTCTGATTAAGAGTGTTTGTGCTTCGTGGGGCGCTCCAATTTCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAATCTAATCCTCGTATTCCTAGGCTGTATAGCCATTTTCACACAACCAGCGACGGCTCGCACGGCGGCGGCGCCAACTCAATTTGATCCATTCGTAACAGAGGATAT
CTCTTTTTTCCCCTGTATTTCATTTGCTCCTCATCCCGCTTGTTGCAAGGCCATTTCTAAGATGAGCCATTGTTCTTCATCGTTTTTCAATGGCATTCCTTCTGCTGATA
TAATTCTGATTAAGAGTGTTTGTGCTTCGTGGGGCGCTCCAATTTCTTAG
Protein sequenceShow/hide protein sequence
MNLILVFLGCIAIFTQPATARTAAAPTQFDPFVTEDISFFPCISFAPHPACCKAISKMSHCSSSFFNGIPSADIILIKSVCASWGAPIS