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Lsi06G010280 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi06G010280
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Genome locationchr06:20443523..20443840
RNA-Seq ExpressionLsi06G010280
SyntenyLsi06G010280
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050064.1 hypothetical protein E6C27_scaffold675G00450 [Cucumis melo var. makuwa]3.0e-3780.19Show/hide
Query:  AKTMIASTIRLALVFLVCIVILTPSVTARTIAAAPSPLVL---EDLSFSNCAPFILEATLCVVDVIKLPVAPHPACCKAISELNDCSPEIYQHISGMDVI
        AK+  ASTIRLALVFLVCIVIL PSVTA T+A APSPL++   +D SFSNCAPFILEAT+C+VDVIKLPVAPHP+CCKAIS+LNDC+PEIY HI GMDVI
Subjt:  AKTMIASTIRLALVFLVCIVILTPSVTARTIAAAPSPLVL---EDLSFSNCAPFILEATLCVVDVIKLPVAPHPACCKAISELNDCSPEIYQHISGMDVI

Query:  KKICGL
        KKICGL
Subjt:  KKICGL

KAA0050068.1 hypothetical protein E6C27_scaffold675G00490 [Cucumis melo var. makuwa]4.4e-3371.15Show/hide
Query:  EAKTMIASTIRLALVFLVCIVILTPSVTARTIAAAPSPLVLEDLSFSNCAPFILEATLCVVDVIKLPVAPHPACCKAISELNDCSPEIYQHISGMDVIKK
        E + M    ++++L FLV + IL PS TA T+AAAPSPL LEDLSFSNC PFIL+AT+CVV VIK PVAPHP+CCKAIS+LNDCSPE+YQHI GMDVIKK
Subjt:  EAKTMIASTIRLALVFLVCIVILTPSVTARTIAAAPSPLVLEDLSFSNCAPFILEATLCVVDVIKLPVAPHPACCKAISELNDCSPEIYQHISGMDVIKK

Query:  ICGL
        IC L
Subjt:  ICGL

KAA0050069.1 hypothetical protein E6C27_scaffold675G00500 [Cucumis melo var. makuwa]1.2e-2766.67Show/hide
Query:  MEAKTMIASTIRLALVFLVCIVILTPSVT-ARTIAAAPSPLVLEDLSFSNCAPFILEATLCVVDVIKLPVAPHPACCKAISELNDCSPEIYQHISG--MD
        M A+++  S ++L LVFLVCI IL PS T A T AAAPSP V ++  F  CAPFILEATLCV DVIK P+APHP+CCKAIS+LNDC+PEIYQ I    MD
Subjt:  MEAKTMIASTIRLALVFLVCIVILTPSVT-ARTIAAAPSPLVLEDLSFSNCAPFILEATLCVVDVIKLPVAPHPACCKAISELNDCSPEIYQHISG--MD

Query:  VIKKICGL
        VIKKIC L
Subjt:  VIKKICGL

TYK10334.1 hypothetical protein E5676_scaffold367G00080 [Cucumis melo var. makuwa]8.4e-2466.33Show/hide
Query:  IRLALVFLVCIVILTPSVT-ARTIAAAPSPLVLEDLSFSNCAPFILEATLCVVDVIKLPVAPHPACCKAISELNDCSPEIYQHI--SGMDVIKKICGL
        ++L LVFLVCI IL PS T A T AAAPSP V ++  F  CAPFILEATLCV  VIK P+APHP+CCKAIS+L DC+P+IYQ I  S M+VIKK C L
Subjt:  IRLALVFLVCIVILTPSVT-ARTIAAAPSPLVLEDLSFSNCAPFILEATLCVVDVIKLPVAPHPACCKAISELNDCSPEIYQHI--SGMDVIKKICGL

TYK10344.1 hypothetical protein E5676_scaffold367G00200 [Cucumis melo var. makuwa]7.8e-3881.13Show/hide
Query:  AKTMIASTIRLALVFLVCIVILTPSVTARTIAAAPSPLVL---EDLSFSNCAPFILEATLCVVDVIKLPVAPHPACCKAISELNDCSPEIYQHISGMDVI
        AK+  ASTIRLALVFLVCIVIL PSVTA T+A APSPL++   +D SFSNCAPFILEAT+C+VDVIKLPVAPHP+CCKAIS+LNDC+PEIYQHI GMDVI
Subjt:  AKTMIASTIRLALVFLVCIVILTPSVTARTIAAAPSPLVL---EDLSFSNCAPFILEATLCVVDVIKLPVAPHPACCKAISELNDCSPEIYQHISGMDVI

Query:  KKICGL
        KKICGL
Subjt:  KKICGL

TrEMBL top hitse value%identityAlignment
A0A0A0LTD6 Uncharacterized protein4.6e-3677.27Show/hide
Query:  MEA-KTMIASTIRLALVFLVCIVILTPSVTARTIAAAPSPLVL----EDLSFSNCAPFILEATLCVVDVIKLPVAPHPACCKAISELNDCSPEIYQHISG
        MEA K+  ASTIRLA+VFLVCIVIL PSVTART+A APSP+++    +D SFSNCAPFILEAT+CVVDVIKLPVA HP+CCKAIS+LNDC+P+IYQHI  
Subjt:  MEA-KTMIASTIRLALVFLVCIVILTPSVTARTIAAAPSPLVL----EDLSFSNCAPFILEATLCVVDVIKLPVAPHPACCKAISELNDCSPEIYQHISG

Query:  MDVIKKICGL
        MDVIKKICGL
Subjt:  MDVIKKICGL

A0A5A7U475 Uncharacterized protein2.1e-3371.15Show/hide
Query:  EAKTMIASTIRLALVFLVCIVILTPSVTARTIAAAPSPLVLEDLSFSNCAPFILEATLCVVDVIKLPVAPHPACCKAISELNDCSPEIYQHISGMDVIKK
        E + M    ++++L FLV + IL PS TA T+AAAPSPL LEDLSFSNC PFIL+AT+CVV VIK PVAPHP+CCKAIS+LNDCSPE+YQHI GMDVIKK
Subjt:  EAKTMIASTIRLALVFLVCIVILTPSVTARTIAAAPSPLVLEDLSFSNCAPFILEATLCVVDVIKLPVAPHPACCKAISELNDCSPEIYQHISGMDVIKK

Query:  ICGL
        IC L
Subjt:  ICGL

A0A5A7U4A7 Uncharacterized protein1.4e-3780.19Show/hide
Query:  AKTMIASTIRLALVFLVCIVILTPSVTARTIAAAPSPLVL---EDLSFSNCAPFILEATLCVVDVIKLPVAPHPACCKAISELNDCSPEIYQHISGMDVI
        AK+  ASTIRLALVFLVCIVIL PSVTA T+A APSPL++   +D SFSNCAPFILEAT+C+VDVIKLPVAPHP+CCKAIS+LNDC+PEIY HI GMDVI
Subjt:  AKTMIASTIRLALVFLVCIVILTPSVTARTIAAAPSPLVL---EDLSFSNCAPFILEATLCVVDVIKLPVAPHPACCKAISELNDCSPEIYQHISGMDVI

Query:  KKICGL
        KKICGL
Subjt:  KKICGL

A0A5A7U9A1 Uncharacterized protein6.0e-2866.67Show/hide
Query:  MEAKTMIASTIRLALVFLVCIVILTPSVT-ARTIAAAPSPLVLEDLSFSNCAPFILEATLCVVDVIKLPVAPHPACCKAISELNDCSPEIYQHISG--MD
        M A+++  S ++L LVFLVCI IL PS T A T AAAPSP V ++  F  CAPFILEATLCV DVIK P+APHP+CCKAIS+LNDC+PEIYQ I    MD
Subjt:  MEAKTMIASTIRLALVFLVCIVILTPSVT-ARTIAAAPSPLVLEDLSFSNCAPFILEATLCVVDVIKLPVAPHPACCKAISELNDCSPEIYQHISG--MD

Query:  VIKKICGL
        VIKKIC L
Subjt:  VIKKICGL

A0A5D3CGL7 Uncharacterized protein3.8e-3881.13Show/hide
Query:  AKTMIASTIRLALVFLVCIVILTPSVTARTIAAAPSPLVL---EDLSFSNCAPFILEATLCVVDVIKLPVAPHPACCKAISELNDCSPEIYQHISGMDVI
        AK+  ASTIRLALVFLVCIVIL PSVTA T+A APSPL++   +D SFSNCAPFILEAT+C+VDVIKLPVAPHP+CCKAIS+LNDC+PEIYQHI GMDVI
Subjt:  AKTMIASTIRLALVFLVCIVILTPSVTARTIAAAPSPLVL---EDLSFSNCAPFILEATLCVVDVIKLPVAPHPACCKAISELNDCSPEIYQHISGMDVI

Query:  KKICGL
        KKICGL
Subjt:  KKICGL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGCAAAGACGATGATCGCATCCACAATAAGGTTAGCACTTGTATTCCTAGTTTGCATAGTCATTTTAACACCATCAGTGACGGCTCGCACGATAGCAGCAGCACC
AAGTCCATTAGTGTTAGAGGATTTATCTTTCTCAAATTGCGCACCCTTTATTTTAGAGGCAACATTGTGTGTGGTAGATGTGATCAAGCTTCCAGTTGCTCCTCATCCTG
CTTGTTGTAAAGCTATTTCTGAACTCAACGACTGTTCTCCTGAAATTTATCAACATATTTCTGGCATGGATGTGATTAAGAAAATATGTGGTCTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGGCAAAGACGATGATCGCATCCACAATAAGGTTAGCACTTGTATTCCTAGTTTGCATAGTCATTTTAACACCATCAGTGACGGCTCGCACGATAGCAGCAGCACC
AAGTCCATTAGTGTTAGAGGATTTATCTTTCTCAAATTGCGCACCCTTTATTTTAGAGGCAACATTGTGTGTGGTAGATGTGATCAAGCTTCCAGTTGCTCCTCATCCTG
CTTGTTGTAAAGCTATTTCTGAACTCAACGACTGTTCTCCTGAAATTTATCAACATATTTCTGGCATGGATGTGATTAAGAAAATATGTGGTCTGTGA
Protein sequenceShow/hide protein sequence
MEAKTMIASTIRLALVFLVCIVILTPSVTARTIAAAPSPLVLEDLSFSNCAPFILEATLCVVDVIKLPVAPHPACCKAISELNDCSPEIYQHISGMDVIKKICGL