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Lsi06G010300 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi06G010300
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Genome locationchr06:20456242..20456559
RNA-Seq ExpressionLsi06G010300
SyntenyLsi06G010300
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050064.1 hypothetical protein E6C27_scaffold675G00450 [Cucumis melo var. makuwa]3.2e-3168.27Show/hide
Query:  KPMSTSTIKISLIFFVCIDILAPLVTARTVAVAPSP---LVPEDLSFSNCTPFILDATMCVVSVIKLSTGPHPSCCKAISELNNCSPEIYQHIPDMDVIK
        K  S STI+++L+F VCI ILAP VTA T+A APSP   L+ +D SFSNC PFIL+ATMC+V VIKL   PHPSCCKAIS+LN+C+PEIY HIP MDVIK
Subjt:  KPMSTSTIKISLIFFVCIDILAPLVTARTVAVAPSP---LVPEDLSFSNCTPFILDATMCVVSVIKLSTGPHPSCCKAISELNNCSPEIYQHIPDMDVIK

Query:  KFCG
        K CG
Subjt:  KFCG

KAA0050068.1 hypothetical protein E6C27_scaffold675G00490 [Cucumis melo var. makuwa]1.5e-3374.51Show/hide
Query:  ETKPMSTSTIKISLIFFVCIDILAPLVTARTVAVAPSPLVPEDLSFSNCTPFILDATMCVVSVIKLSTGPHPSCCKAISELNNCSPEIYQHIPDMDVIKK
        E + MST  +KISL F V + ILAP  TA TVA APSPL  EDLSFSNCTPFILDATMCVVSVIK    PHPSCCKAIS+LN+CSPE+YQHIP MDVIKK
Subjt:  ETKPMSTSTIKISLIFFVCIDILAPLVTARTVAVAPSPLVPEDLSFSNCTPFILDATMCVVSVIKLSTGPHPSCCKAISELNNCSPEIYQHIPDMDVIKK

Query:  FC
         C
Subjt:  FC

KAA0050069.1 hypothetical protein E6C27_scaffold675G00500 [Cucumis melo var. makuwa]3.4e-2559.43Show/hide
Query:  METKPMSTSTIKISLIFFVCIDILAPLVT-ARTVAVAPSPLVPEDLSFSNCTPFILDATMCVVSVIKLSTGPHPSCCKAISELNNCSPEIYQHI--PDMD
        M  + ++ S +K+ L+F VCI ILAP  T A T A APSP VP++  F  C PFIL+AT+CV  VIK    PHPSCCKAIS+LN+C+PEIYQ I  PDMD
Subjt:  METKPMSTSTIKISLIFFVCIDILAPLVT-ARTVAVAPSPLVPEDLSFSNCTPFILDATMCVVSVIKLSTGPHPSCCKAISELNNCSPEIYQHI--PDMD

Query:  VIKKFC
        VIKK C
Subjt:  VIKKFC

TYK10334.1 hypothetical protein E5676_scaffold367G00080 [Cucumis melo var. makuwa]4.6e-2260.42Show/hide
Query:  IKISLIFFVCIDILAPLVT-ARTVAVAPSPLVPEDLSFSNCTPFILDATMCVVSVIKLSTGPHPSCCKAISELNNCSPEIYQHIP--DMDVIKKFC
        +K+ L+F VCI ILAP  T A T A APSP VP++  F  C PFIL+AT+CV  VIK    PHPSCCKAIS+L +C+P+IYQ IP  DM+VIKK C
Subjt:  IKISLIFFVCIDILAPLVT-ARTVAVAPSPLVPEDLSFSNCTPFILDATMCVVSVIKLSTGPHPSCCKAISELNNCSPEIYQHIP--DMDVIKKFC

TYK10344.1 hypothetical protein E5676_scaffold367G00200 [Cucumis melo var. makuwa]8.3e-3269.23Show/hide
Query:  KPMSTSTIKISLIFFVCIDILAPLVTARTVAVAPSP---LVPEDLSFSNCTPFILDATMCVVSVIKLSTGPHPSCCKAISELNNCSPEIYQHIPDMDVIK
        K  S STI+++L+F VCI ILAP VTA T+A APSP   L+ +D SFSNC PFIL+ATMC+V VIKL   PHPSCCKAIS+LN+C+PEIYQHIP MDVIK
Subjt:  KPMSTSTIKISLIFFVCIDILAPLVTARTVAVAPSP---LVPEDLSFSNCTPFILDATMCVVSVIKLSTGPHPSCCKAISELNNCSPEIYQHIPDMDVIK

Query:  KFCG
        K CG
Subjt:  KFCG

TrEMBL top hitse value%identityAlignment
A0A0A0LTD6 Uncharacterized protein1.8e-3267.92Show/hide
Query:  TKPMSTSTIKISLIFFVCIDILAPLVTARTVAVAPSPLV----PEDLSFSNCTPFILDATMCVVSVIKLSTGPHPSCCKAISELNNCSPEIYQHIPDMDV
        TK  S STI+++++F VCI ILAP VTART+A APSP++     +D SFSNC PFIL+ATMCVV VIKL    HPSCCKAIS+LN+C+P+IYQHIPDMDV
Subjt:  TKPMSTSTIKISLIFFVCIDILAPLVTARTVAVAPSPLV----PEDLSFSNCTPFILDATMCVVSVIKLSTGPHPSCCKAISELNNCSPEIYQHIPDMDV

Query:  IKKFCG
        IKK CG
Subjt:  IKKFCG

A0A5A7U475 Uncharacterized protein7.4e-3474.51Show/hide
Query:  ETKPMSTSTIKISLIFFVCIDILAPLVTARTVAVAPSPLVPEDLSFSNCTPFILDATMCVVSVIKLSTGPHPSCCKAISELNNCSPEIYQHIPDMDVIKK
        E + MST  +KISL F V + ILAP  TA TVA APSPL  EDLSFSNCTPFILDATMCVVSVIK    PHPSCCKAIS+LN+CSPE+YQHIP MDVIKK
Subjt:  ETKPMSTSTIKISLIFFVCIDILAPLVTARTVAVAPSPLVPEDLSFSNCTPFILDATMCVVSVIKLSTGPHPSCCKAISELNNCSPEIYQHIPDMDVIKK

Query:  FC
         C
Subjt:  FC

A0A5A7U4A7 Uncharacterized protein1.5e-3168.27Show/hide
Query:  KPMSTSTIKISLIFFVCIDILAPLVTARTVAVAPSP---LVPEDLSFSNCTPFILDATMCVVSVIKLSTGPHPSCCKAISELNNCSPEIYQHIPDMDVIK
        K  S STI+++L+F VCI ILAP VTA T+A APSP   L+ +D SFSNC PFIL+ATMC+V VIKL   PHPSCCKAIS+LN+C+PEIY HIP MDVIK
Subjt:  KPMSTSTIKISLIFFVCIDILAPLVTARTVAVAPSP---LVPEDLSFSNCTPFILDATMCVVSVIKLSTGPHPSCCKAISELNNCSPEIYQHIPDMDVIK

Query:  KFCG
        K CG
Subjt:  KFCG

A0A5A7U9A1 Uncharacterized protein1.6e-2559.43Show/hide
Query:  METKPMSTSTIKISLIFFVCIDILAPLVT-ARTVAVAPSPLVPEDLSFSNCTPFILDATMCVVSVIKLSTGPHPSCCKAISELNNCSPEIYQHI--PDMD
        M  + ++ S +K+ L+F VCI ILAP  T A T A APSP VP++  F  C PFIL+AT+CV  VIK    PHPSCCKAIS+LN+C+PEIYQ I  PDMD
Subjt:  METKPMSTSTIKISLIFFVCIDILAPLVT-ARTVAVAPSPLVPEDLSFSNCTPFILDATMCVVSVIKLSTGPHPSCCKAISELNNCSPEIYQHI--PDMD

Query:  VIKKFC
        VIKK C
Subjt:  VIKKFC

A0A5D3CGL7 Uncharacterized protein4.0e-3269.23Show/hide
Query:  KPMSTSTIKISLIFFVCIDILAPLVTARTVAVAPSP---LVPEDLSFSNCTPFILDATMCVVSVIKLSTGPHPSCCKAISELNNCSPEIYQHIPDMDVIK
        K  S STI+++L+F VCI ILAP VTA T+A APSP   L+ +D SFSNC PFIL+ATMC+V VIKL   PHPSCCKAIS+LN+C+PEIYQHIP MDVIK
Subjt:  KPMSTSTIKISLIFFVCIDILAPLVTARTVAVAPSP---LVPEDLSFSNCTPFILDATMCVVSVIKLSTGPHPSCCKAISELNNCSPEIYQHIPDMDVIK

Query:  KFCG
        K CG
Subjt:  KFCG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGACCAAGCCTATGAGCACATCCACAATAAAGATATCACTTATATTCTTTGTATGCATAGACATTTTGGCACCATTAGTGACGGCTCGCACAGTGGCAGTAGCACC
TAGTCCATTAGTACCAGAAGATTTATCTTTCTCTAACTGCACACCGTTTATCTTAGATGCGACAATGTGTGTGGTAAGTGTGATCAAACTTTCAACTGGTCCTCATCCTT
CATGTTGCAAAGCCATTTCTGAGCTCAACAACTGCTCCCCCGAAATTTACCAACATATTCCTGACATGGATGTGATTAAGAAATTTTGTGGTCACTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGACCAAGCCTATGAGCACATCCACAATAAAGATATCACTTATATTCTTTGTATGCATAGACATTTTGGCACCATTAGTGACGGCTCGCACAGTGGCAGTAGCACC
TAGTCCATTAGTACCAGAAGATTTATCTTTCTCTAACTGCACACCGTTTATCTTAGATGCGACAATGTGTGTGGTAAGTGTGATCAAACTTTCAACTGGTCCTCATCCTT
CATGTTGCAAAGCCATTTCTGAGCTCAACAACTGCTCCCCCGAAATTTACCAACATATTCCTGACATGGATGTGATTAAGAAATTTTGTGGTCACTGA
Protein sequenceShow/hide protein sequence
METKPMSTSTIKISLIFFVCIDILAPLVTARTVAVAPSPLVPEDLSFSNCTPFILDATMCVVSVIKLSTGPHPSCCKAISELNNCSPEIYQHIPDMDVIKKFCGH