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Lsi06G010310 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi06G010310
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Genome locationchr06:20461923..20462222
RNA-Seq ExpressionLsi06G010310
SyntenyLsi06G010310
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050078.1 hypothetical protein E6C27_scaffold675G00620 [Cucumis melo var. makuwa]2.1e-3274.26Show/hide
Query:  MKLALVFLVCIAVLVLSTMAHT--APVPDPFTTEDFSLLDCASFISDATKCVIDVMKNAIAPHPSCCKAISKLKDCSSEFLKNVPSADMILIKGICALWG
        +KL LVF VC+A+L +S +AHT  A   DPFT E  SLL C SFIS+ATKCVIDVMKNA+APHPSCCKA SKL DCS EFLK +PSADMILIKGICALWG
Subjt:  MKLALVFLVCIAVLVLSTMAHT--APVPDPFTTEDFSLLDCASFISDATKCVIDVMKNAIAPHPSCCKAISKLKDCSSEFLKNVPSADMILIKGICALWG

Query:  V
        V
Subjt:  V

KAE8653021.1 hypothetical protein Csa_004567 [Cucumis sativus]1.3e-3476.24Show/hide
Query:  MKLALVFLVCIAVLVLSTMAHTAPV--PDPFTTEDFSLLDCASFISDATKCVIDVMKNAIAPHPSCCKAISKLKDCSSEFLKNVPSADMILIKGICALWG
        MKL LVFLVCIA+L +S MAHT  +   DPFT E+FSLL C SFIS+AT C++DVMKNA+APHPSCCKA SKL DCSSEFLK +PSADMILIKGICALWG
Subjt:  MKLALVFLVCIAVLVLSTMAHTAPV--PDPFTTEDFSLLDCASFISDATKCVIDVMKNAIAPHPSCCKAISKLKDCSSEFLKNVPSADMILIKGICALWG

Query:  V
        V
Subjt:  V

KAG6589812.1 hypothetical protein SDJN03_15235, partial [Cucurbita argyrosperma subsp. sororia]6.5e-2665.66Show/hide
Query:  MKLALVFLVCIAVLVLSTMAHTAPVPDPFTTEDFSLLDCASFISDATKCVIDVMKNAIAPHPSCCKAISKLKDCSSEFLKNVPSADMILIKGICALWGV
        MKLA   LVCIA+L    MA     PDPF  E FSL  C S +S+ TKCV+DVMK A+APHPSCC+AISKL  CSS FLK+VPSADM LIK +CALWGV
Subjt:  MKLALVFLVCIAVLVLSTMAHTAPVPDPFTTEDFSLLDCASFISDATKCVIDVMKNAIAPHPSCCKAISKLKDCSSEFLKNVPSADMILIKGICALWGV

TYK10330.1 hypothetical protein E5676_scaffold367G00010 [Cucumis melo var. makuwa]9.3e-3374.26Show/hide
Query:  MKLALVFLVCIAVLVLSTMAHT--APVPDPFTTEDFSLLDCASFISDATKCVIDVMKNAIAPHPSCCKAISKLKDCSSEFLKNVPSADMILIKGICALWG
        +KL LVF VC+A+L +S +AHT  A   DPFT E+ SLL C SFIS+ATKCVIDVMKNA+APHPSCCKA SKL DCS EFLK +PSADMILIKGICALWG
Subjt:  MKLALVFLVCIAVLVLSTMAHT--APVPDPFTTEDFSLLDCASFISDATKCVIDVMKNAIAPHPSCCKAISKLKDCSSEFLKNVPSADMILIKGICALWG

Query:  V
        V
Subjt:  V

TYK10345.1 hypothetical protein E5676_scaffold367G00210 [Cucumis melo var. makuwa]1.9e-2564.65Show/hide
Query:  KLALVFLVCIAVLVLSTMAH-TAPVPDPFTTEDFSLLDCASFISDATKCVIDVMKNAIAPHPSCCKAISKLKDCSSEFLKNVPSADMILIKGICALWGV
        KL LV LVCIA+L  S  A  T       T+EDFSL  C SF+  ATKCVIDV+KNA+APHPSCC+AIS+L DCSS+FLK++PS+DMIL+K ICA WGV
Subjt:  KLALVFLVCIAVLVLSTMAH-TAPVPDPFTTEDFSLLDCASFISDATKCVIDVMKNAIAPHPSCCKAISKLKDCSSEFLKNVPSADMILIKGICALWGV

TrEMBL top hitse value%identityAlignment
A0A5A7U471 Uncharacterized protein3.8e-2458.59Show/hide
Query:  MKLALVFLVCIAVLVLSTMAHTAPVPDPFTTEDFSLLDCASFISDATKCVIDVMKNAIAPHPSCCKAISKLKDCSSEFLKNVPSADMILIKGICALWGV
        MK+ L+FLVCIA+L L  MA T    D F  +DF+ ++C  F  +ATKC+IDVMKN++ PHPSCC+AI KL DC+ E  K+VPSAD  L+K ICALWGV
Subjt:  MKLALVFLVCIAVLVLSTMAHTAPVPDPFTTEDFSLLDCASFISDATKCVIDVMKNAIAPHPSCCKAISKLKDCSSEFLKNVPSADMILIKGICALWGV

A0A5A7U483 Uncharacterized protein1.0e-3274.26Show/hide
Query:  MKLALVFLVCIAVLVLSTMAHT--APVPDPFTTEDFSLLDCASFISDATKCVIDVMKNAIAPHPSCCKAISKLKDCSSEFLKNVPSADMILIKGICALWG
        +KL LVF VC+A+L +S +AHT  A   DPFT E  SLL C SFIS+ATKCVIDVMKNA+APHPSCCKA SKL DCS EFLK +PSADMILIKGICALWG
Subjt:  MKLALVFLVCIAVLVLSTMAHT--APVPDPFTTEDFSLLDCASFISDATKCVIDVMKNAIAPHPSCCKAISKLKDCSSEFLKNVPSADMILIKGICALWG

Query:  V
        V
Subjt:  V

A0A5A7U904 Uncharacterized protein7.7e-2559.8Show/hide
Query:  MKLALVFLVCIAVLVLSTMAHTAPV----PDPFTTEDFSLLDCASFISDATKCVIDVMKNAIAPHPSCCKAISKLKDCSSEFLKNVPSADMILIKGICAL
        MKL L+FL C A+  L   A  A V    PDPF TED S   C SF+ +ATKC+IDV K+ IAPHP+CCKAISKLK CSS F   +PSADMILIK +C  
Subjt:  MKLALVFLVCIAVLVLSTMAHTAPV----PDPFTTEDFSLLDCASFISDATKCVIDVMKNAIAPHPSCCKAISKLKDCSSEFLKNVPSADMILIKGICAL

Query:  WG
        WG
Subjt:  WG

A0A5D3CFS6 Uncharacterized protein9.1e-2664.65Show/hide
Query:  KLALVFLVCIAVLVLSTMAH-TAPVPDPFTTEDFSLLDCASFISDATKCVIDVMKNAIAPHPSCCKAISKLKDCSSEFLKNVPSADMILIKGICALWGV
        KL LV LVCIA+L  S  A  T       T+EDFSL  C SF+  ATKCVIDV+KNA+APHPSCC+AIS+L DCSS+FLK++PS+DMIL+K ICA WGV
Subjt:  KLALVFLVCIAVLVLSTMAH-TAPVPDPFTTEDFSLLDCASFISDATKCVIDVMKNAIAPHPSCCKAISKLKDCSSEFLKNVPSADMILIKGICALWGV

A0A5D3CG41 Uncharacterized protein4.5e-3374.26Show/hide
Query:  MKLALVFLVCIAVLVLSTMAHT--APVPDPFTTEDFSLLDCASFISDATKCVIDVMKNAIAPHPSCCKAISKLKDCSSEFLKNVPSADMILIKGICALWG
        +KL LVF VC+A+L +S +AHT  A   DPFT E+ SLL C SFIS+ATKCVIDVMKNA+APHPSCCKA SKL DCS EFLK +PSADMILIKGICALWG
Subjt:  MKLALVFLVCIAVLVLSTMAHT--APVPDPFTTEDFSLLDCASFISDATKCVIDVMKNAIAPHPSCCKAISKLKDCSSEFLKNVPSADMILIKGICALWG

Query:  V
        V
Subjt:  V

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGCTTGCACTTGTATTCCTAGTATGCATAGCCGTTTTAGTATTATCCACAATGGCACATACCGCGCCAGTGCCTGATCCATTCACAACAGAGGATTTTTCATTGTT
GGACTGCGCATCGTTTATTTCTGATGCAACGAAATGTGTGATTGATGTGATGAAAAATGCGATTGCTCCTCATCCGTCATGTTGCAAAGCCATTTCTAAGCTCAAGGATT
GTTCCTCTGAGTTTCTCAAAAACGTTCCTTCTGCTGACATGATTTTGATTAAAGGCATTTGTGCTTTGTGGGGTGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGCTTGCACTTGTATTCCTAGTATGCATAGCCGTTTTAGTATTATCCACAATGGCACATACCGCGCCAGTGCCTGATCCATTCACAACAGAGGATTTTTCATTGTT
GGACTGCGCATCGTTTATTTCTGATGCAACGAAATGTGTGATTGATGTGATGAAAAATGCGATTGCTCCTCATCCGTCATGTTGCAAAGCCATTTCTAAGCTCAAGGATT
GTTCCTCTGAGTTTCTCAAAAACGTTCCTTCTGCTGACATGATTTTGATTAAAGGCATTTGTGCTTTGTGGGGTGTTTGA
Protein sequenceShow/hide protein sequence
MKLALVFLVCIAVLVLSTMAHTAPVPDPFTTEDFSLLDCASFISDATKCVIDVMKNAIAPHPSCCKAISKLKDCSSEFLKNVPSADMILIKGICALWGV