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Lsi06G010320 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi06G010320
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Genome locationchr06:20465642..20465959
RNA-Seq ExpressionLsi06G010320
SyntenyLsi06G010320
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050064.1 hypothetical protein E6C27_scaffold675G00450 [Cucumis melo var. makuwa]7.1e-3167.31Show/hide
Query:  KSMSTSTIKISLIFLVCVAILAPSATARTVEAAPSP---LVSEDLSFSNCTPFILDATMCVVSVIKLPTGAHPSCCKAISELNNCSPEIYQHISSMDVIK
        KS S STI+++L+FLVC+ ILAPS TA T+  APSP   L+ +D SFSNC PFIL+ATMC+V VIKLP   HPSCCKAIS+LN+C+PEIY HI  MDVIK
Subjt:  KSMSTSTIKISLIFLVCVAILAPSATARTVEAAPSP---LVSEDLSFSNCTPFILDATMCVVSVIKLPTGAHPSCCKAISELNNCSPEIYQHISSMDVIK

Query:  KFCG
        K CG
Subjt:  KFCG

KAA0050068.1 hypothetical protein E6C27_scaffold675G00490 [Cucumis melo var. makuwa]5.2e-3476.47Show/hide
Query:  KTKSMSTSTIKISLIFLVCVAILAPSATARTVEAAPSPLVSEDLSFSNCTPFILDATMCVVSVIKLPTGAHPSCCKAISELNNCSPEIYQHISSMDVIKK
        + + MST  +KISL FLV +AILAPSATA TV AAPSPL  EDLSFSNCTPFILDATMCVVSVIK P   HPSCCKAIS+LN+CSPE+YQHI  MDVIKK
Subjt:  KTKSMSTSTIKISLIFLVCVAILAPSATARTVEAAPSPLVSEDLSFSNCTPFILDATMCVVSVIKLPTGAHPSCCKAISELNNCSPEIYQHISSMDVIKK

Query:  FC
         C
Subjt:  FC

KAA0050069.1 hypothetical protein E6C27_scaffold675G00500 [Cucumis melo var. makuwa]1.7e-2460.38Show/hide
Query:  MKTKSMSTSTIKISLIFLVCVAILAPSAT-ARTVEAAPSPLVSEDLSFSNCTPFILDATMCVVSVIKLPTGAHPSCCKAISELNNCSPEIYQHISS--MD
        M  +S++ S +K+ L+FLVC+AILAPS T A T  AAPSP V ++  F  C PFIL+AT+CV  VIK P   HPSCCKAIS+LN+C+PEIYQ I S  MD
Subjt:  MKTKSMSTSTIKISLIFLVCVAILAPSAT-ARTVEAAPSPLVSEDLSFSNCTPFILDATMCVVSVIKLPTGAHPSCCKAISELNNCSPEIYQHISS--MD

Query:  VIKKFC
        VIKK C
Subjt:  VIKKFC

TYK10334.1 hypothetical protein E5676_scaffold367G00080 [Cucumis melo var. makuwa]3.0e-2160.42Show/hide
Query:  IKISLIFLVCVAILAPSAT-ARTVEAAPSPLVSEDLSFSNCTPFILDATMCVVSVIKLPTGAHPSCCKAISELNNCSPEIYQHI--SSMDVIKKFC
        +K+ L+FLVC+AILAPS T A T  AAPSP V ++  F  C PFIL+AT+CV  VIK P   HPSCCKAIS+L +C+P+IYQ I  S M+VIKK C
Subjt:  IKISLIFLVCVAILAPSAT-ARTVEAAPSPLVSEDLSFSNCTPFILDATMCVVSVIKLPTGAHPSCCKAISELNNCSPEIYQHI--SSMDVIKKFC

TYK10344.1 hypothetical protein E5676_scaffold367G00200 [Cucumis melo var. makuwa]1.9e-3168.27Show/hide
Query:  KSMSTSTIKISLIFLVCVAILAPSATARTVEAAPSP---LVSEDLSFSNCTPFILDATMCVVSVIKLPTGAHPSCCKAISELNNCSPEIYQHISSMDVIK
        KS S STI+++L+FLVC+ ILAPS TA T+  APSP   L+ +D SFSNC PFIL+ATMC+V VIKLP   HPSCCKAIS+LN+C+PEIYQHI  MDVIK
Subjt:  KSMSTSTIKISLIFLVCVAILAPSATARTVEAAPSP---LVSEDLSFSNCTPFILDATMCVVSVIKLPTGAHPSCCKAISELNNCSPEIYQHISSMDVIK

Query:  KFCG
        K CG
Subjt:  KFCG

TrEMBL top hitse value%identityAlignment
A0A0A0LTD6 Uncharacterized protein1.8e-3266.98Show/hide
Query:  TKSMSTSTIKISLIFLVCVAILAPSATARTVEAAPSPLV----SEDLSFSNCTPFILDATMCVVSVIKLPTGAHPSCCKAISELNNCSPEIYQHISSMDV
        TKS S STI+++++FLVC+ ILAPS TART+  APSP++     +D SFSNC PFIL+ATMCVV VIKLP  +HPSCCKAIS+LN+C+P+IYQHI  MDV
Subjt:  TKSMSTSTIKISLIFLVCVAILAPSATARTVEAAPSPLV----SEDLSFSNCTPFILDATMCVVSVIKLPTGAHPSCCKAISELNNCSPEIYQHISSMDV

Query:  IKKFCG
        IKK CG
Subjt:  IKKFCG

A0A5A7U475 Uncharacterized protein2.5e-3476.47Show/hide
Query:  KTKSMSTSTIKISLIFLVCVAILAPSATARTVEAAPSPLVSEDLSFSNCTPFILDATMCVVSVIKLPTGAHPSCCKAISELNNCSPEIYQHISSMDVIKK
        + + MST  +KISL FLV +AILAPSATA TV AAPSPL  EDLSFSNCTPFILDATMCVVSVIK P   HPSCCKAIS+LN+CSPE+YQHI  MDVIKK
Subjt:  KTKSMSTSTIKISLIFLVCVAILAPSATARTVEAAPSPLVSEDLSFSNCTPFILDATMCVVSVIKLPTGAHPSCCKAISELNNCSPEIYQHISSMDVIKK

Query:  FC
         C
Subjt:  FC

A0A5A7U4A7 Uncharacterized protein3.4e-3167.31Show/hide
Query:  KSMSTSTIKISLIFLVCVAILAPSATARTVEAAPSP---LVSEDLSFSNCTPFILDATMCVVSVIKLPTGAHPSCCKAISELNNCSPEIYQHISSMDVIK
        KS S STI+++L+FLVC+ ILAPS TA T+  APSP   L+ +D SFSNC PFIL+ATMC+V VIKLP   HPSCCKAIS+LN+C+PEIY HI  MDVIK
Subjt:  KSMSTSTIKISLIFLVCVAILAPSATARTVEAAPSP---LVSEDLSFSNCTPFILDATMCVVSVIKLPTGAHPSCCKAISELNNCSPEIYQHISSMDVIK

Query:  KFCG
        K CG
Subjt:  KFCG

A0A5A7U9A1 Uncharacterized protein8.2e-2560.38Show/hide
Query:  MKTKSMSTSTIKISLIFLVCVAILAPSAT-ARTVEAAPSPLVSEDLSFSNCTPFILDATMCVVSVIKLPTGAHPSCCKAISELNNCSPEIYQHISS--MD
        M  +S++ S +K+ L+FLVC+AILAPS T A T  AAPSP V ++  F  C PFIL+AT+CV  VIK P   HPSCCKAIS+LN+C+PEIYQ I S  MD
Subjt:  MKTKSMSTSTIKISLIFLVCVAILAPSAT-ARTVEAAPSPLVSEDLSFSNCTPFILDATMCVVSVIKLPTGAHPSCCKAISELNNCSPEIYQHISS--MD

Query:  VIKKFC
        VIKK C
Subjt:  VIKKFC

A0A5D3CGL7 Uncharacterized protein9.0e-3268.27Show/hide
Query:  KSMSTSTIKISLIFLVCVAILAPSATARTVEAAPSP---LVSEDLSFSNCTPFILDATMCVVSVIKLPTGAHPSCCKAISELNNCSPEIYQHISSMDVIK
        KS S STI+++L+FLVC+ ILAPS TA T+  APSP   L+ +D SFSNC PFIL+ATMC+V VIKLP   HPSCCKAIS+LN+C+PEIYQHI  MDVIK
Subjt:  KSMSTSTIKISLIFLVCVAILAPSATARTVEAAPSP---LVSEDLSFSNCTPFILDATMCVVSVIKLPTGAHPSCCKAISELNNCSPEIYQHISSMDVIK

Query:  KFCG
        K CG
Subjt:  KFCG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGACCAAGTCGATGAGCACATCCACAATAAAGATATCACTTATATTCCTAGTATGCGTAGCCATTTTAGCACCATCAGCGACAGCTCGCACAGTAGAAGCAGCACC
TAGTCCATTAGTATCAGAAGATTTATCTTTCTCTAACTGCACACCATTTATCTTAGATGCTACAATGTGTGTGGTAAGTGTGATCAAACTTCCAACTGGTGCTCATCCTT
CTTGTTGCAAAGCCATTTCTGAGCTCAACAATTGCTCCCCCGAAATTTACCAACATATTTCCAGCATGGATGTGATTAAGAAATTTTGTGGTCAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGACCAAGTCGATGAGCACATCCACAATAAAGATATCACTTATATTCCTAGTATGCGTAGCCATTTTAGCACCATCAGCGACAGCTCGCACAGTAGAAGCAGCACC
TAGTCCATTAGTATCAGAAGATTTATCTTTCTCTAACTGCACACCATTTATCTTAGATGCTACAATGTGTGTGGTAAGTGTGATCAAACTTCCAACTGGTGCTCATCCTT
CTTGTTGCAAAGCCATTTCTGAGCTCAACAATTGCTCCCCCGAAATTTACCAACATATTTCCAGCATGGATGTGATTAAGAAATTTTGTGGTCAGTGA
Protein sequenceShow/hide protein sequence
MKTKSMSTSTIKISLIFLVCVAILAPSATARTVEAAPSPLVSEDLSFSNCTPFILDATMCVVSVIKLPTGAHPSCCKAISELNNCSPEIYQHISSMDVIKKFCGQ