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Lsi06G010340 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi06G010340
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Genome locationchr06:20491629..20491946
RNA-Seq ExpressionLsi06G010340
SyntenyLsi06G010340
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050078.1 hypothetical protein E6C27_scaffold675G00620 [Cucumis melo var. makuwa]2.3e-1654.81Show/hide
Query:  MTSMKLALISLVSIAILALPAMARTTVAVPNPNPFTTEDLSLL--------------------VAPHLSCCKAISKLNDCSSEFLKNVPSADMILIKDIC
        M S+KL L+  V +AILA+  +A T  A P+ +PFT E LSLL                    VAPH SCCKA SKLNDCS EFLK +PSADMILIK IC
Subjt:  MTSMKLALISLVSIAILALPAMARTTVAVPNPNPFTTEDLSLL--------------------VAPHLSCCKAISKLNDCSSEFLKNVPSADMILIKDIC

Query:  ALWG
        ALWG
Subjt:  ALWG

KAA0050081.1 hypothetical protein E6C27_scaffold675G00650 [Cucumis melo var. makuwa]1.2e-1246.67Show/hide
Query:  TSMKLALISLVSIAILALPAMA-RTTVAVPNPNPFTTEDLSLL--------------------VAPHLSCCKAISKLNDCSSEFLKNVPSADMILIKDIC
        ++MKL LI L   AI  LPA A +  VA   P+PF TED+S                      +APH +CCKAISKL  CSS F   +PSADMILIK +C
Subjt:  TSMKLALISLVSIAILALPAMA-RTTVAVPNPNPFTTEDLSLL--------------------VAPHLSCCKAISKLNDCSSEFLKNVPSADMILIKDIC

Query:  ALWGA
          WGA
Subjt:  ALWGA

KAE8653021.1 hypothetical protein Csa_004567 [Cucumis sativus]1.2e-1757.69Show/hide
Query:  MTSMKLALISLVSIAILALPAMARTTVAVPNPNPFTTEDLSLL--------------------VAPHLSCCKAISKLNDCSSEFLKNVPSADMILIKDIC
        M SMKL L+ LV IAILA+  MA T    P  +PFT E+ SLL                    VAPH SCCKA SKLNDCSSEFLK +PSADMILIK IC
Subjt:  MTSMKLALISLVSIAILALPAMARTTVAVPNPNPFTTEDLSLL--------------------VAPHLSCCKAISKLNDCSSEFLKNVPSADMILIKDIC

Query:  ALWG
        ALWG
Subjt:  ALWG

KAG6589812.1 hypothetical protein SDJN03_15235, partial [Cucurbita argyrosperma subsp. sororia]2.4e-1353.47Show/hide
Query:  MKLALISLVSIAILALPAMARTTVAVPNPNPFTTEDLSLL--------------------VAPHLSCCKAISKLNDCSSEFLKNVPSADMILIKDICALW
        MKLA   LV IAILA PAMA        P+PF  E  SL                     VAPH SCC+AISKLN CSS FLK+VPSADM LIK +CALW
Subjt:  MKLALISLVSIAILALPAMARTTVAVPNPNPFTTEDLSLL--------------------VAPHLSCCKAISKLNDCSSEFLKNVPSADMILIKDICALW

Query:  G
        G
Subjt:  G

TYK10330.1 hypothetical protein E5676_scaffold367G00010 [Cucumis melo var. makuwa]1.0e-1654.81Show/hide
Query:  MTSMKLALISLVSIAILALPAMARTTVAVPNPNPFTTEDLSLL--------------------VAPHLSCCKAISKLNDCSSEFLKNVPSADMILIKDIC
        M S+KL L+  V +AILA+  +A T  A P+ +PFT E+LSLL                    VAPH SCCKA SKLNDCS EFLK +PSADMILIK IC
Subjt:  MTSMKLALISLVSIAILALPAMARTTVAVPNPNPFTTEDLSLL--------------------VAPHLSCCKAISKLNDCSSEFLKNVPSADMILIKDIC

Query:  ALWG
        ALWG
Subjt:  ALWG

TrEMBL top hitse value%identityAlignment
A0A0A0LTE1 Uncharacterized protein2.4e-1149.02Show/hide
Query:  MTSMKLALISLVSIAILALPAMARTT----------VAVPNPNPFTTEDLSLLV-------APHLSCCKAISKLNDCSSEFLKNVPSADMILIKDICALW
        + S+KL +I LV IAILALP M RTT          VA  N   FT E    ++        PH SCC+AI KLNDC+ E  K+VPS D  LIK IC LW
Subjt:  MTSMKLALISLVSIAILALPAMARTT----------VAVPNPNPFTTEDLSLLV-------APHLSCCKAISKLNDCSSEFLKNVPSADMILIKDICALW

Query:  GA
        GA
Subjt:  GA

A0A5A7U483 Uncharacterized protein1.1e-1654.81Show/hide
Query:  MTSMKLALISLVSIAILALPAMARTTVAVPNPNPFTTEDLSLL--------------------VAPHLSCCKAISKLNDCSSEFLKNVPSADMILIKDIC
        M S+KL L+  V +AILA+  +A T  A P+ +PFT E LSLL                    VAPH SCCKA SKLNDCS EFLK +PSADMILIK IC
Subjt:  MTSMKLALISLVSIAILALPAMARTTVAVPNPNPFTTEDLSLL--------------------VAPHLSCCKAISKLNDCSSEFLKNVPSADMILIKDIC

Query:  ALWG
        ALWG
Subjt:  ALWG

A0A5A7U904 Uncharacterized protein5.8e-1346.67Show/hide
Query:  TSMKLALISLVSIAILALPAMA-RTTVAVPNPNPFTTEDLSLL--------------------VAPHLSCCKAISKLNDCSSEFLKNVPSADMILIKDIC
        ++MKL LI L   AI  LPA A +  VA   P+PF TED+S                      +APH +CCKAISKL  CSS F   +PSADMILIK +C
Subjt:  TSMKLALISLVSIAILALPAMA-RTTVAVPNPNPFTTEDLSLL--------------------VAPHLSCCKAISKLNDCSSEFLKNVPSADMILIKDIC

Query:  ALWGA
          WGA
Subjt:  ALWGA

A0A5D3CFS6 Uncharacterized protein8.4e-1250.5Show/hide
Query:  KLALISLVSIAILALPAMAR-TTVAVPNPNPFTTEDLSLL--------------------VAPHLSCCKAISKLNDCSSEFLKNVPSADMILIKDICALW
        KL L+ LV IAILA    AR T VA   P   T+ED SL                     VAPH SCC+AIS+L+DCSS+FLK++PS+DMIL+K ICA W
Subjt:  KLALISLVSIAILALPAMAR-TTVAVPNPNPFTTEDLSLL--------------------VAPHLSCCKAISKLNDCSSEFLKNVPSADMILIKDICALW

Query:  G
        G
Subjt:  G

A0A5D3CG41 Uncharacterized protein5.1e-1754.81Show/hide
Query:  MTSMKLALISLVSIAILALPAMARTTVAVPNPNPFTTEDLSLL--------------------VAPHLSCCKAISKLNDCSSEFLKNVPSADMILIKDIC
        M S+KL L+  V +AILA+  +A T  A P+ +PFT E+LSLL                    VAPH SCCKA SKLNDCS EFLK +PSADMILIK IC
Subjt:  MTSMKLALISLVSIAILALPAMARTTVAVPNPNPFTTEDLSLL--------------------VAPHLSCCKAISKLNDCSSEFLKNVPSADMILIKDIC

Query:  ALWG
        ALWG
Subjt:  ALWG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACCTCAATGAAGCTAGCACTTATATCTCTAGTCTCCATAGCCATTTTAGCATTACCCGCGATGGCACGTACCACAGTGGCAGTGCCTAATCCGAATCCGTTCACAAC
AGAGGATTTATCATTATTAGTTGCTCCTCATCTGTCATGTTGCAAAGCCATCTCTAAGCTCAACGATTGTTCCTCCGAGTTTCTCAAAAACGTTCCCTCTGCTGACATGA
TTTTGATTAAGGACATTTGTGCATTGTGGGGTGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGACCTCAATGAAGCTAGCACTTATATCTCTAGTCTCCATAGCCATTTTAGCATTACCCGCGATGGCACGTACCACAGTGGCAGTGCCTAATCCGAATCCGTTCACAAC
AGAGGATTTATCATTATTAGTTGCTCCTCATCTGTCATGTTGCAAAGCCATCTCTAAGCTCAACGATTGTTCCTCCGAGTTTCTCAAAAACGTTCCCTCTGCTGACATGA
TTTTGATTAAGGACATTTGTGCATTGTGGGGTGCTTGA
Protein sequenceShow/hide protein sequence
MTSMKLALISLVSIAILALPAMARTTVAVPNPNPFTTEDLSLLVAPHLSCCKAISKLNDCSSEFLKNVPSADMILIKDICALWGA