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Lsi06G010350 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi06G010350
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Genome locationchr06:20493737..20495554
RNA-Seq ExpressionLsi06G010350
SyntenyLsi06G010350
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050064.1 hypothetical protein E6C27_scaffold675G00450 [Cucumis melo var. makuwa]3.2e-3372.82Show/hide
Query:  KSMSTSTIKISLILLVCIAIFAPSATARTMAAAPSP---LVPEDLSFSNCAPFILEATMCVVSVIKLPTGPHPSCCKAISELNDCSPEIYQHIPGIDVIK
        KS S STI+++L+ LVCI I APS TA TMA APSP   L+ +D SFSNCAPFILEATMC+V VIKLP  PHPSCCKAIS+LNDC+PEIY HIPG+DVIK
Subjt:  KSMSTSTIKISLILLVCIAIFAPSATARTMAAAPSP---LVPEDLSFSNCAPFILEATMCVVSVIKLPTGPHPSCCKAISELNDCSPEIYQHIPGIDVIK

Query:  KFC
        K C
Subjt:  KFC

KAA0050068.1 hypothetical protein E6C27_scaffold675G00490 [Cucumis melo var. makuwa]5.8e-3576.47Show/hide
Query:  ETKSMSTSTIKISLILLVCIAIFAPSATARTMAAAPSPLVPEDLSFSNCAPFILEATMCVVSVIKLPTGPHPSCCKAISELNDCSPEIYQHIPGIDVIKK
        E + MST  +KISL  LV +AI APSATA T+AAAPSPL  EDLSFSNC PFIL+ATMCVVSVIK P  PHPSCCKAIS+LNDCSPE+YQHIPG+DVIKK
Subjt:  ETKSMSTSTIKISLILLVCIAIFAPSATARTMAAAPSPLVPEDLSFSNCAPFILEATMCVVSVIKLPTGPHPSCCKAISELNDCSPEIYQHIPGIDVIKK

Query:  FC
         C
Subjt:  FC

TYK10330.1 hypothetical protein E5676_scaffold367G00010 [Cucumis melo var. makuwa]1.9e-3066.99Show/hide
Query:  KLPLVLLLCFAILASSSITARSKTMPTVAPDPFVTEDFSLFSCISFVSEATKCMIDVLKHAVAPHPSCCKAIAKLYDCSPEFLKGIPSTDMILIKGVCAM
        KLPLV  +C AILA S I       P+   DPF  E+ SL  C SF+SEATKC+IDV+K+AVAPHPSCCKA +KL DCSPEFLKGIPS DMILIKG+CA+
Subjt:  KLPLVLLLCFAILASSSITARSKTMPTVAPDPFVTEDFSLFSCISFVSEATKCMIDVLKHAVAPHPSCCKAIAKLYDCSPEFLKGIPSTDMILIKGVCAM

Query:  WGV
        WGV
Subjt:  WGV

TYK10344.1 hypothetical protein E5676_scaffold367G00200 [Cucumis melo var. makuwa]8.3e-3473.79Show/hide
Query:  KSMSTSTIKISLILLVCIAIFAPSATARTMAAAPSP---LVPEDLSFSNCAPFILEATMCVVSVIKLPTGPHPSCCKAISELNDCSPEIYQHIPGIDVIK
        KS S STI+++L+ LVCI I APS TA TMA APSP   L+ +D SFSNCAPFILEATMC+V VIKLP  PHPSCCKAIS+LNDC+PEIYQHIPG+DVIK
Subjt:  KSMSTSTIKISLILLVCIAIFAPSATARTMAAAPSP---LVPEDLSFSNCAPFILEATMCVVSVIKLPTGPHPSCCKAISELNDCSPEIYQHIPGIDVIK

Query:  KFC
        K C
Subjt:  KFC

TYK10345.1 hypothetical protein E5676_scaffold367G00210 [Cucumis melo var. makuwa]8.6e-3166.67Show/hide
Query:  TTTPTKLPLVLLLCFAILASSSITARSKTMPTVAPDPFVTEDFSLFSCISFVSEATKCMIDVLKHAVAPHPSCCKAIAKLYDCSPEFLKGIPSTDMILIK
        T+  TKLPLVLL+C AILA SS+TAR   +    P    +EDFSLF CISFV +ATKC+IDVLK+AVAPHPSCC+AI++L+DCS +FLK IPS+DMIL+K
Subjt:  TTTPTKLPLVLLLCFAILASSSITARSKTMPTVAPDPFVTEDFSLFSCISFVSEATKCMIDVLKHAVAPHPSCCKAIAKLYDCSPEFLKGIPSTDMILIK

Query:  GVCAMWGVSIS
         +CA WGVSIS
Subjt:  GVCAMWGVSIS

TrEMBL top hitse value%identityAlignment
A0A0A0LTD6 Uncharacterized protein7.6e-3370.48Show/hide
Query:  TKSMSTSTIKISLILLVCIAIFAPSATARTMAAAPSPLV----PEDLSFSNCAPFILEATMCVVSVIKLPTGPHPSCCKAISELNDCSPEIYQHIPGIDV
        TKS S STI+++++ LVCI I APS TARTMA APSP++     +D SFSNCAPFILEATMCVV VIKLP   HPSCCKAIS+LNDC+P+IYQHIP +DV
Subjt:  TKSMSTSTIKISLILLVCIAIFAPSATARTMAAAPSPLV----PEDLSFSNCAPFILEATMCVVSVIKLPTGPHPSCCKAISELNDCSPEIYQHIPGIDV

Query:  IKKFC
        IKK C
Subjt:  IKKFC

A0A5A7U475 Uncharacterized protein2.8e-3576.47Show/hide
Query:  ETKSMSTSTIKISLILLVCIAIFAPSATARTMAAAPSPLVPEDLSFSNCAPFILEATMCVVSVIKLPTGPHPSCCKAISELNDCSPEIYQHIPGIDVIKK
        E + MST  +KISL  LV +AI APSATA T+AAAPSPL  EDLSFSNC PFIL+ATMCVVSVIK P  PHPSCCKAIS+LNDCSPE+YQHIPG+DVIKK
Subjt:  ETKSMSTSTIKISLILLVCIAIFAPSATARTMAAAPSPLVPEDLSFSNCAPFILEATMCVVSVIKLPTGPHPSCCKAISELNDCSPEIYQHIPGIDVIKK

Query:  FC
         C
Subjt:  FC

A0A5A7U4A7 Uncharacterized protein1.5e-3372.82Show/hide
Query:  KSMSTSTIKISLILLVCIAIFAPSATARTMAAAPSP---LVPEDLSFSNCAPFILEATMCVVSVIKLPTGPHPSCCKAISELNDCSPEIYQHIPGIDVIK
        KS S STI+++L+ LVCI I APS TA TMA APSP   L+ +D SFSNCAPFILEATMC+V VIKLP  PHPSCCKAIS+LNDC+PEIY HIPG+DVIK
Subjt:  KSMSTSTIKISLILLVCIAIFAPSATARTMAAAPSP---LVPEDLSFSNCAPFILEATMCVVSVIKLPTGPHPSCCKAISELNDCSPEIYQHIPGIDVIK

Query:  KFC
        K C
Subjt:  KFC

A0A5D3CFS6 Uncharacterized protein4.2e-3166.67Show/hide
Query:  TTTPTKLPLVLLLCFAILASSSITARSKTMPTVAPDPFVTEDFSLFSCISFVSEATKCMIDVLKHAVAPHPSCCKAIAKLYDCSPEFLKGIPSTDMILIK
        T+  TKLPLVLL+C AILA SS+TAR   +    P    +EDFSLF CISFV +ATKC+IDVLK+AVAPHPSCC+AI++L+DCS +FLK IPS+DMIL+K
Subjt:  TTTPTKLPLVLLLCFAILASSSITARSKTMPTVAPDPFVTEDFSLFSCISFVSEATKCMIDVLKHAVAPHPSCCKAIAKLYDCSPEFLKGIPSTDMILIK

Query:  GVCAMWGVSIS
         +CA WGVSIS
Subjt:  GVCAMWGVSIS

A0A5D3CGL7 Uncharacterized protein4.0e-3473.79Show/hide
Query:  KSMSTSTIKISLILLVCIAIFAPSATARTMAAAPSP---LVPEDLSFSNCAPFILEATMCVVSVIKLPTGPHPSCCKAISELNDCSPEIYQHIPGIDVIK
        KS S STI+++L+ LVCI I APS TA TMA APSP   L+ +D SFSNCAPFILEATMC+V VIKLP  PHPSCCKAIS+LNDC+PEIYQHIPG+DVIK
Subjt:  KSMSTSTIKISLILLVCIAIFAPSATARTMAAAPSP---LVPEDLSFSNCAPFILEATMCVVSVIKLPTGPHPSCCKAISELNDCSPEIYQHIPGIDVIK

Query:  KFC
        K C
Subjt:  KFC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGACCAAGTCTATGAGCACATCCACAATAAAGATATCACTTATATTACTAGTATGCATAGCTATTTTTGCACCATCAGCGACGGCTCGTACGATGGCAGCAGCACC
TAGTCCATTAGTACCAGAAGATTTATCTTTCTCTAACTGCGCACCGTTTATCTTAGAGGCAACAATGTGTGTGGTAAGTGTGATCAAACTTCCAACTGGTCCTCATCCTT
CTTGTTGCAAAGCCATTTCTGAGCTCAACGACTGCTCTCCCGAAATTTACCAACATATTCCTGGCATAGATGTGATTAAGAAATTTTGTGTACCAACAATGACAACAACA
CCCACCAAGTTACCACTTGTACTTCTACTCTGCTTTGCCATTTTAGCATCATCATCGATAACGGCTCGCTCAAAAACGATGCCAACAGTAGCGCCTGATCCATTTGTAAC
TGAGGATTTCTCTTTGTTCTCCTGCATATCATTTGTTTCTGAGGCAACAAAATGTATGATTGATGTGCTTAAGCACGCAGTTGCTCCTCATCCTTCTTGTTGCAAAGCCA
TTGCTAAACTCTATGATTGTTCACCCGAGTTTCTCAAAGGCATTCCCTCTACCGATATGATTTTGATTAAGGGTGTTTGTGCTATGTGGGGAGTTTCTATTTCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGACCAAGTCTATGAGCACATCCACAATAAAGATATCACTTATATTACTAGTATGCATAGCTATTTTTGCACCATCAGCGACGGCTCGTACGATGGCAGCAGCACC
TAGTCCATTAGTACCAGAAGATTTATCTTTCTCTAACTGCGCACCGTTTATCTTAGAGGCAACAATGTGTGTGGTAAGTGTGATCAAACTTCCAACTGGTCCTCATCCTT
CTTGTTGCAAAGCCATTTCTGAGCTCAACGACTGCTCTCCCGAAATTTACCAACATATTCCTGGCATAGATGTGATTAAGAAATTTTGTGTACCAACAATGACAACAACA
CCCACCAAGTTACCACTTGTACTTCTACTCTGCTTTGCCATTTTAGCATCATCATCGATAACGGCTCGCTCAAAAACGATGCCAACAGTAGCGCCTGATCCATTTGTAAC
TGAGGATTTCTCTTTGTTCTCCTGCATATCATTTGTTTCTGAGGCAACAAAATGTATGATTGATGTGCTTAAGCACGCAGTTGCTCCTCATCCTTCTTGTTGCAAAGCCA
TTGCTAAACTCTATGATTGTTCACCCGAGTTTCTCAAAGGCATTCCCTCTACCGATATGATTTTGATTAAGGGTGTTTGTGCTATGTGGGGAGTTTCTATTTCTTAG
Protein sequenceShow/hide protein sequence
METKSMSTSTIKISLILLVCIAIFAPSATARTMAAAPSPLVPEDLSFSNCAPFILEATMCVVSVIKLPTGPHPSCCKAISELNDCSPEIYQHIPGIDVIKKFCVPTMTTT
PTKLPLVLLLCFAILASSSITARSKTMPTVAPDPFVTEDFSLFSCISFVSEATKCMIDVLKHAVAPHPSCCKAIAKLYDCSPEFLKGIPSTDMILIKGVCAMWGVSIS