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Lsi06G010360 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi06G010360
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Genome locationchr06:20505108..20509338
RNA-Seq ExpressionLsi06G010360
SyntenyLsi06G010360
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050069.1 hypothetical protein E6C27_scaffold675G00500 [Cucumis melo var. makuwa]3.1e-3473.15Show/hide
Query:  MAVKSLNASTMTLTFVFLVCMVILAPS-----TMAVVPYPSVPQNFPFSSCVPFILDATLCVVDVIKFPIAPHPSCCKAILKLNDCAPQIFQKIPPADMD
        MA +SLN S M L  VFLVC+ ILAPS     T A  P PSVPQNFPF  C PFIL+ATLCV DVIKFPIAPHPSCCKAI KLNDCAP+I+QKIP  DMD
Subjt:  MAVKSLNASTMTLTFVFLVCMVILAPS-----TMAVVPYPSVPQNFPFSSCVPFILDATLCVVDVIKFPIAPHPSCCKAILKLNDCAPQIFQKIPPADMD

Query:  VIKKICAL
        VIKKIC+L
Subjt:  VIKKICAL

KAA0050072.1 hypothetical protein E6C27_scaffold675G00540 [Cucumis melo var. makuwa]1.5e-2562.96Show/hide
Query:  MAVKSLNASTMTLTFVFLVCMVILAPSTMA------VVPYPSVPQNFPFSSCVPFILDATLCVVDVIKFPIAPHPSCCKAILKLNDCAPQIFQKIPPADM
        MAVKSL AS +    VF+V + ILA S  A          PS+ QN  F SC PFI D TLC+VDV KFPI+PHP CCKAI KLNDCAP +FQ IPPADM
Subjt:  MAVKSLNASTMTLTFVFLVCMVILAPSTMA------VVPYPSVPQNFPFSSCVPFILDATLCVVDVIKFPIAPHPSCCKAILKLNDCAPQIFQKIPPADM

Query:  DVIKKICA
        DVIKKICA
Subjt:  DVIKKICA

KAE8653023.1 hypothetical protein Csa_023561, partial [Cucumis sativus]2.0e-2562.62Show/hide
Query:  KSLNASTMTLTFVFLVCMVILAPSTMA-------VVPYPSVPQNFPFSSCVPFILDATLCVVDVIKFPIAPHPSCCKAILKLNDCAPQIFQKIPPADMDV
        KSL AS M L  VF+V + ILA S  A           PS+ Q+  F SC PFILDATLC+VDV KFPIAPHP CCKAI KLNDCAP +FQ IP ADMDV
Subjt:  KSLNASTMTLTFVFLVCMVILAPSTMA-------VVPYPSVPQNFPFSSCVPFILDATLCVVDVIKFPIAPHPSCCKAILKLNDCAPQIFQKIPPADMDV

Query:  IKKICAL
        +K ICAL
Subjt:  IKKICAL

TYK10334.1 hypothetical protein E5676_scaffold367G00080 [Cucumis melo var. makuwa]1.5e-2870.41Show/hide
Query:  MTLTFVFLVCMVILAPS-----TMAVVPYPSVPQNFPFSSCVPFILDATLCVVDVIKFPIAPHPSCCKAILKLNDCAPQIFQKIPPADMDVIKKICAL
        M L  VFLVC+ ILAPS     T A  P PSVPQNFPF  C PFIL+ATLCV  VIKFPIAPHPSCCKAI KL DCAP I+QKIP +DM+VIKK C+L
Subjt:  MTLTFVFLVCMVILAPS-----TMAVVPYPSVPQNFPFSSCVPFILDATLCVVDVIKFPIAPHPSCCKAILKLNDCAPQIFQKIPPADMDVIKKICAL

TYK10344.1 hypothetical protein E5676_scaffold367G00200 [Cucumis melo var. makuwa]5.9e-2563.3Show/hide
Query:  AVKSLNASTMTLTFVFLVCMVILAPS----TMAVVPYP---SVPQNFPFSSCVPFILDATLCVVDVIKFPIAPHPSCCKAILKLNDCAPQIFQKIPPADM
        A KS +AST+ L  VFLVC+VILAPS    TMA  P P    + Q+  FS+C PFIL+AT+C+VDVIK P+APHPSCCKAI  LNDCAP+I+Q IP   M
Subjt:  AVKSLNASTMTLTFVFLVCMVILAPS----TMAVVPYP---SVPQNFPFSSCVPFILDATLCVVDVIKFPIAPHPSCCKAILKLNDCAPQIFQKIPPADM

Query:  DVIKKICAL
        DVIKKIC L
Subjt:  DVIKKICAL

TrEMBL top hitse value%identityAlignment
A0A0A0LTD6 Uncharacterized protein3.7e-2563.64Show/hide
Query:  AVKSLNASTMTLTFVFLVCMVILAPS----TMAVVPYPSV----PQNFPFSSCVPFILDATLCVVDVIKFPIAPHPSCCKAILKLNDCAPQIFQKIPPAD
        A KS +AST+ L  VFLVC+VILAPS    TMA  P P +      +  FS+C PFIL+AT+CVVDVIK P+A HPSCCKAI  LNDCAPQI+Q IP  D
Subjt:  AVKSLNASTMTLTFVFLVCMVILAPS----TMAVVPYPSV----PQNFPFSSCVPFILDATLCVVDVIKFPIAPHPSCCKAILKLNDCAPQIFQKIPPAD

Query:  MDVIKKICAL
        MDVIKKIC L
Subjt:  MDVIKKICAL

A0A5A7U2L3 Uncharacterized protein7.5e-2662.96Show/hide
Query:  MAVKSLNASTMTLTFVFLVCMVILAPSTMA------VVPYPSVPQNFPFSSCVPFILDATLCVVDVIKFPIAPHPSCCKAILKLNDCAPQIFQKIPPADM
        MAVKSL AS +    VF+V + ILA S  A          PS+ QN  F SC PFI D TLC+VDV KFPI+PHP CCKAI KLNDCAP +FQ IPPADM
Subjt:  MAVKSLNASTMTLTFVFLVCMVILAPSTMA------VVPYPSVPQNFPFSSCVPFILDATLCVVDVIKFPIAPHPSCCKAILKLNDCAPQIFQKIPPADM

Query:  DVIKKICA
        DVIKKICA
Subjt:  DVIKKICA

A0A5A7U9A1 Uncharacterized protein1.5e-3473.15Show/hide
Query:  MAVKSLNASTMTLTFVFLVCMVILAPS-----TMAVVPYPSVPQNFPFSSCVPFILDATLCVVDVIKFPIAPHPSCCKAILKLNDCAPQIFQKIPPADMD
        MA +SLN S M L  VFLVC+ ILAPS     T A  P PSVPQNFPF  C PFIL+ATLCV DVIKFPIAPHPSCCKAI KLNDCAP+I+QKIP  DMD
Subjt:  MAVKSLNASTMTLTFVFLVCMVILAPS-----TMAVVPYPSVPQNFPFSSCVPFILDATLCVVDVIKFPIAPHPSCCKAILKLNDCAPQIFQKIPPADMD

Query:  VIKKICAL
        VIKKIC+L
Subjt:  VIKKICAL

A0A5D3CGK9 Uncharacterized protein7.2e-2970.41Show/hide
Query:  MTLTFVFLVCMVILAPS-----TMAVVPYPSVPQNFPFSSCVPFILDATLCVVDVIKFPIAPHPSCCKAILKLNDCAPQIFQKIPPADMDVIKKICAL
        M L  VFLVC+ ILAPS     T A  P PSVPQNFPF  C PFIL+ATLCV  VIKFPIAPHPSCCKAI KL DCAP I+QKIP +DM+VIKK C+L
Subjt:  MTLTFVFLVCMVILAPS-----TMAVVPYPSVPQNFPFSSCVPFILDATLCVVDVIKFPIAPHPSCCKAILKLNDCAPQIFQKIPPADMDVIKKICAL

A0A5D3CGL7 Uncharacterized protein2.8e-2563.3Show/hide
Query:  AVKSLNASTMTLTFVFLVCMVILAPS----TMAVVPYP---SVPQNFPFSSCVPFILDATLCVVDVIKFPIAPHPSCCKAILKLNDCAPQIFQKIPPADM
        A KS +AST+ L  VFLVC+VILAPS    TMA  P P    + Q+  FS+C PFIL+AT+C+VDVIK P+APHPSCCKAI  LNDCAP+I+Q IP   M
Subjt:  AVKSLNASTMTLTFVFLVCMVILAPS----TMAVVPYP---SVPQNFPFSSCVPFILDATLCVVDVIKFPIAPHPSCCKAILKLNDCAPQIFQKIPPADM

Query:  DVIKKICAL
        DVIKKIC L
Subjt:  DVIKKICAL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAAGAATGGCGGTCAAGTCACTGAATGCATCCACAATGACGTTAACATTTGTATTCCTTGTCTGCATGGTTATTTTAGCACCATCAACGATGGCTGTAGTGCCATA
TCCATCAGTGCCACAAAATTTTCCTTTCTCTAGTTGTGTTCCATTTATTTTGGATGCGACATTGTGTGTGGTAGATGTGATCAAGTTTCCAATTGCTCCTCATCCTTCTT
GTTGCAAAGCCATTTTGAAGCTTAATGACTGTGCTCCTCAAATTTTCCAAAAGATTCCTCCTGCTGACATGGACGTGATTAAGAAGATTTGTGCTTTATAA
mRNA sequenceShow/hide mRNA sequence
ATGCAAAGAATGGCGGTCAAGTCACTGAATGCATCCACAATGACGTTAACATTTGTATTCCTTGTCTGCATGGTTATTTTAGCACCATCAACGATGGCTGTAGTGCCATA
TCCATCAGTGCCACAAAATTTTCCTTTCTCTAGTTGTGTTCCATTTATTTTGGATGCGACATTGTGTGTGGTAGATGTGATCAAGTTTCCAATTGCTCCTCATCCTTCTT
GTTGCAAAGCCATTTTGAAGCTTAATGACTGTGCTCCTCAAATTTTCCAAAAGATTCCTCCTGCTGACATGGACGTGATTAAGAAGATTTGTGCTTTATAA
Protein sequenceShow/hide protein sequence
MQRMAVKSLNASTMTLTFVFLVCMVILAPSTMAVVPYPSVPQNFPFSSCVPFILDATLCVVDVIKFPIAPHPSCCKAILKLNDCAPQIFQKIPPADMDVIKKICAL