; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi06G010500 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi06G010500
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionG-patch domain-containing protein
Genome locationchr06:20725349..20725621
RNA-Seq ExpressionLsi06G010500
SyntenyLsi06G010500
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR000467 - G-patch domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050035.1 Zinc finger protein, putative isoform 1 [Cucumis melo var. makuwa]6.1e-3182.02Show/hide
Query:  ITNLDISRDNIGAFELHTKGFGSKMMAKMGFIEGEGLGKDDQGMSCLIEVMKWPKSLGLGIEFSEASTSAAGDNQESWGSTSRTGSGAL
        + N DISRD+IG+FELHTKGFGSKMMAKMGF+EG GLGKD QGM+  IEVMK PKSLGLGIEFSEASTSAAGDNQ SW S++RTGSGAL
Subjt:  ITNLDISRDNIGAFELHTKGFGSKMMAKMGFIEGEGLGKDDQGMSCLIEVMKWPKSLGLGIEFSEASTSAAGDNQESWGSTSRTGSGAL

XP_008443896.1 PREDICTED: uncharacterized protein LOC103487380 isoform X1 [Cucumis melo]5.1e-3080.9Show/hide
Query:  ITNLDISRDNIGAFELHTKGFGSKMMAKMGFIEGEGLGKDDQGMSCLIEVMKWPKSLGLGIEFSEASTSAAGDNQESWGSTSRTGSGAL
        + N DISRD+IG+FELHTKGFGSKMMAKMGF+EG GLGKD QGM+  IEVMK PKSLGLGIEFSEASTSAAGDNQ SW S++RT SGAL
Subjt:  ITNLDISRDNIGAFELHTKGFGSKMMAKMGFIEGEGLGKDDQGMSCLIEVMKWPKSLGLGIEFSEASTSAAGDNQESWGSTSRTGSGAL

XP_008443898.1 PREDICTED: uncharacterized protein LOC103487380 isoform X2 [Cucumis melo]5.1e-3080.9Show/hide
Query:  ITNLDISRDNIGAFELHTKGFGSKMMAKMGFIEGEGLGKDDQGMSCLIEVMKWPKSLGLGIEFSEASTSAAGDNQESWGSTSRTGSGAL
        + N DISRD+IG+FELHTKGFGSKMMAKMGF+EG GLGKD QGM+  IEVMK PKSLGLGIEFSEASTSAAGDNQ SW S++RT SGAL
Subjt:  ITNLDISRDNIGAFELHTKGFGSKMMAKMGFIEGEGLGKDDQGMSCLIEVMKWPKSLGLGIEFSEASTSAAGDNQESWGSTSRTGSGAL

XP_011655819.1 uncharacterized protein LOC101215133 [Cucumis sativus]5.7e-2979.78Show/hide
Query:  ITNLDISRDNIGAFELHTKGFGSKMMAKMGFIEGEGLGKDDQGMSCLIEVMKWPKSLGLGIEFSEASTSAAGDNQESWGSTSRTGSGAL
        + N+DISRD+IG+FELHTKGFGSKMMAKMGF+EG GLGKD QGM+  IEVMK PKSLGLGIEFSEASTSAAGDNQ S  S++RTGS AL
Subjt:  ITNLDISRDNIGAFELHTKGFGSKMMAKMGFIEGEGLGKDDQGMSCLIEVMKWPKSLGLGIEFSEASTSAAGDNQESWGSTSRTGSGAL

XP_038876900.1 LOW QUALITY PROTEIN: uncharacterized protein LOC120069254 [Benincasa hispida]2.8e-2878.65Show/hide
Query:  ITNLDISRDNIGAFELHTKGFGSKMMAKMGFIEGEGLGKDDQGMSCLIEVMKWPKSLGLGIEFSEASTSAAGDNQESWGSTSRTGSGAL
        + N+DISRD+IGAFEL+TKGFGSKMMAKMG++EG GLGKD QGM+  IEVMK PKSLGLGIEFSEASTSAAGDNQ S  S +R+GSGAL
Subjt:  ITNLDISRDNIGAFELHTKGFGSKMMAKMGFIEGEGLGKDDQGMSCLIEVMKWPKSLGLGIEFSEASTSAAGDNQESWGSTSRTGSGAL

TrEMBL top hitse value%identityAlignment
A0A0A0LTU7 Protein SQS12.7e-2979.78Show/hide
Query:  ITNLDISRDNIGAFELHTKGFGSKMMAKMGFIEGEGLGKDDQGMSCLIEVMKWPKSLGLGIEFSEASTSAAGDNQESWGSTSRTGSGAL
        + N+DISRD+IG+FELHTKGFGSKMMAKMGF+EG GLGKD QGM+  IEVMK PKSLGLGIEFSEASTSAAGDNQ S  S++RTGS AL
Subjt:  ITNLDISRDNIGAFELHTKGFGSKMMAKMGFIEGEGLGKDDQGMSCLIEVMKWPKSLGLGIEFSEASTSAAGDNQESWGSTSRTGSGAL

A0A1S3B932 uncharacterized protein LOC103487380 isoform X12.5e-3080.9Show/hide
Query:  ITNLDISRDNIGAFELHTKGFGSKMMAKMGFIEGEGLGKDDQGMSCLIEVMKWPKSLGLGIEFSEASTSAAGDNQESWGSTSRTGSGAL
        + N DISRD+IG+FELHTKGFGSKMMAKMGF+EG GLGKD QGM+  IEVMK PKSLGLGIEFSEASTSAAGDNQ SW S++RT SGAL
Subjt:  ITNLDISRDNIGAFELHTKGFGSKMMAKMGFIEGEGLGKDDQGMSCLIEVMKWPKSLGLGIEFSEASTSAAGDNQESWGSTSRTGSGAL

A0A1S3B9V9 Protein SQS12.5e-3080.9Show/hide
Query:  ITNLDISRDNIGAFELHTKGFGSKMMAKMGFIEGEGLGKDDQGMSCLIEVMKWPKSLGLGIEFSEASTSAAGDNQESWGSTSRTGSGAL
        + N DISRD+IG+FELHTKGFGSKMMAKMGF+EG GLGKD QGM+  IEVMK PKSLGLGIEFSEASTSAAGDNQ SW S++RT SGAL
Subjt:  ITNLDISRDNIGAFELHTKGFGSKMMAKMGFIEGEGLGKDDQGMSCLIEVMKWPKSLGLGIEFSEASTSAAGDNQESWGSTSRTGSGAL

A0A5A7U8V1 Protein SQS12.9e-3182.02Show/hide
Query:  ITNLDISRDNIGAFELHTKGFGSKMMAKMGFIEGEGLGKDDQGMSCLIEVMKWPKSLGLGIEFSEASTSAAGDNQESWGSTSRTGSGAL
        + N DISRD+IG+FELHTKGFGSKMMAKMGF+EG GLGKD QGM+  IEVMK PKSLGLGIEFSEASTSAAGDNQ SW S++RTGSGAL
Subjt:  ITNLDISRDNIGAFELHTKGFGSKMMAKMGFIEGEGLGKDDQGMSCLIEVMKWPKSLGLGIEFSEASTSAAGDNQESWGSTSRTGSGAL

A0A6J1KSJ4 Protein SQS15.7e-2779.76Show/hide
Query:  ITNLDISRDNIGAFELHTKGFGSKMMAKMGFIEGEGLGKDDQGMSCLIEVMKWPKSLGLGIEFSEASTSAAGDNQESWGSTSRT
        + N+DISRD+IGAFE HT GFGSKMMAKMGF+EG GLGKD QGM+C IEV+K PKSLGLGIEFSEASTS AGDNQES GS  RT
Subjt:  ITNLDISRDNIGAFELHTKGFGSKMMAKMGFIEGEGLGKDDQGMSCLIEVMKWPKSLGLGIEFSEASTSAAGDNQESWGSTSRT

SwissProt top hitse value%identityAlignment
A4UMC6 Tuftelin-interacting protein 117.0e-0639.06Show/hide
Query:  NIGAFELHTKGFGSKMMAKMGFIEGEGLGKDDQGMSCLIEVMKWPKSLGLGIEFSEASTSAAGD
        + G++E HTKG G K++ KMG++ G+GLGK+ QG+   IE  +      +G   SE +T +  D
Subjt:  NIGAFELHTKGFGSKMMAKMGFIEGEGLGKDDQGMSCLIEVMKWPKSLGLGIEFSEASTSAAGD

A7SBN6 Zinc finger CCCH-type with G patch domain-containing protein2.2e-0754Show/hide
Query:  NIGAFELHTKGFGSKMMAKMGFIEGEGLGKDDQGMSCLIEVMKWPKSLGL
        ++G +E HTKG GSK+MAKMG+I G+GLGKD +G    IEV+  P+   L
Subjt:  NIGAFELHTKGFGSKMMAKMGFIEGEGLGKDDQGMSCLIEVMKWPKSLGL

Q0IIX9 Tuftelin-interacting protein 115.4e-0637.31Show/hide
Query:  SRDNIGAFELHTKGFGSKMMAKMGFIEGEGLGKDDQGMSCLIEVMKWPKSLGLGIEFSEASTSAAGD
        S  + G++E HTKG G K++ KMG+++G GLGK+ QG+   IE  +      +G   SE +  +  D
Subjt:  SRDNIGAFELHTKGFGSKMMAKMGFIEGEGLGKDDQGMSCLIEVMKWPKSLGLGIEFSEASTSAAGD

Q9SHG6 Septin and tuftelin-interacting protein 1 homolog 11.4e-0648.28Show/hide
Query:  NIGAFELHTKGFGSKMMAKMGFIEGEGLGKDDQGMSCLIEVMKWPKSLGLGI-EFSEA
        +IG FE  TKG G K++ KMG+ +G GLGK+ QG+   IE    PK++G+G  +F EA
Subjt:  NIGAFELHTKGFGSKMMAKMGFIEGEGLGKDDQGMSCLIEVMKWPKSLGLGI-EFSEA

Q9Y103 Septin-interacting protein 17.0e-0636.62Show/hide
Query:  SRDNIGAFELHTKGFGSKMMAKMGFIEGEGLGKDDQGMSCLIEVMKWPKSLGLGIEFSEASTSAAGDNQES
        S  N+GA+E HT+G G+K++ +MG+  G+GLGKD QG+S  ++         +G    E + S  G   +S
Subjt:  SRDNIGAFELHTKGFGSKMMAKMGFIEGEGLGKDDQGMSCLIEVMKWPKSLGLGIEFSEASTSAAGDNQES

Arabidopsis top hitse value%identityAlignment
AT1G17070.1 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain1.0e-0748.28Show/hide
Query:  NIGAFELHTKGFGSKMMAKMGFIEGEGLGKDDQGMSCLIEVMKWPKSLGLGI-EFSEA
        +IG FE  TKG G K++ KMG+ +G GLGK+ QG+   IE    PK++G+G  +F EA
Subjt:  NIGAFELHTKGFGSKMMAKMGFIEGEGLGKDDQGMSCLIEVMKWPKSLGLGI-EFSEA

AT2G24830.1 zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein6.1e-0545.1Show/hide
Query:  FELHTKGFGSKMMAKMGFIEGEGLGKDDQGM--SCLIEVMKWPKSLGLGIE
        +E HT+G  SKMMA MG+ EG GLG   QG+    L++V+   +SL   +E
Subjt:  FELHTKGFGSKMMAKMGFIEGEGLGKDDQGM--SCLIEVMKWPKSLGLGIE

AT2G42330.1 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain2.1e-0546.81Show/hide
Query:  FELHTKGFGSKMMAKMGFIEGEGLGKDDQGMSCLIEVMKWPKSLGLG
        FE  + G G K++ KMG+ +G GLGK+ QG+   IEV   PK++G+G
Subjt:  FELHTKGFGSKMMAKMGFIEGEGLGKDDQGMSCLIEVMKWPKSLGLG

AT2G42330.2 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain2.1e-0546.81Show/hide
Query:  FELHTKGFGSKMMAKMGFIEGEGLGKDDQGMSCLIEVMKWPKSLGLG
        FE  + G G K++ KMG+ +G GLGK+ QG+   IEV   PK++G+G
Subjt:  FELHTKGFGSKMMAKMGFIEGEGLGKDDQGMSCLIEVMKWPKSLGLG

AT3G09850.1 D111/G-patch domain-containing protein2.6e-1653.75Show/hide
Query:  NIGAFELHTKGFGSKMMAKMGFIEGEGLGKDDQGMSCLIEVMKWPKSLGLGIEFS----EASTSAAGDNQESWGSTSRTG
        +IGAFE+HT+GFGSKMMAKMGFI+G GLGKD +G++  IE ++ PKSLGLG++FS    + S S+  +N      +S +G
Subjt:  NIGAFELHTKGFGSKMMAKMGFIEGEGLGKDDQGMSCLIEVMKWPKSLGLGIEFS----EASTSAAGDNQESWGSTSRTG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCACGAATCTGGATATAAGTAGGGATAATATTGGTGCATTTGAGTTGCACACCAAGGGATTTGGGTCAAAGATGATGGCAAAAATGGGATTTATAGAAGGCGAAGG
ATTAGGGAAAGATGATCAAGGAATGTCTTGTCTCATTGAAGTGATGAAATGGCCAAAATCGCTTGGATTAGGCATCGAGTTCTCCGAGGCCTCGACTTCTGCTGCTGGTG
ACAACCAAGAAAGTTGGGGATCCACCTCTAGAACTGGATCCGGAGCTCTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGATCACGAATCTGGATATAAGTAGGGATAATATTGGTGCATTTGAGTTGCACACCAAGGGATTTGGGTCAAAGATGATGGCAAAAATGGGATTTATAGAAGGCGAAGG
ATTAGGGAAAGATGATCAAGGAATGTCTTGTCTCATTGAAGTGATGAAATGGCCAAAATCGCTTGGATTAGGCATCGAGTTCTCCGAGGCCTCGACTTCTGCTGCTGGTG
ACAACCAAGAAAGTTGGGGATCCACCTCTAGAACTGGATCCGGAGCTCTGTGA
Protein sequenceShow/hide protein sequence
MITNLDISRDNIGAFELHTKGFGSKMMAKMGFIEGEGLGKDDQGMSCLIEVMKWPKSLGLGIEFSEASTSAAGDNQESWGSTSRTGSGAL