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Lsi06G010530 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi06G010530
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionBEST Arabidopsis thaliana protein match is: NHL domain-containing protein .
Genome locationchr06:20757151..20757603
RNA-Seq ExpressionLsi06G010530
SyntenyLsi06G010530
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008443900.1 PREDICTED: uncharacterized protein LOC103487383 [Cucumis melo]1.2e-7190.6Show/hide
Query:  MAAHQTRPLSTPYSPLN-QQQDDLQDIDESIPSNGCGCFRLFGFGFNRNGNYEGRNLLQQKQGKEEELWMVRKLKKLKEVSEMVAGPKWKNFIRKMGGYL
        MA+HQTRP STPYSPLN QQQDDLQDID+SI SNGCGCF+LFGFG NRN NYEG NLLQQKQG+EEE WMV+KLKK+KEVSEMVAGPKWKNFIRKMGGYL
Subjt:  MAAHQTRPLSTPYSPLN-QQQDDLQDIDESIPSNGCGCFRLFGFGFNRNGNYEGRNLLQQKQGKEEELWMVRKLKKLKEVSEMVAGPKWKNFIRKMGGYL

Query:  KGKKQRNRFQYDPESYALNFDGGFDGEEDDHHPPIGFSTRFAVPLASRE
        KGKKQRNRFQYDPESYALNFDGGFDGEEDDHHPPIGFS+RFAVPLASRE
Subjt:  KGKKQRNRFQYDPESYALNFDGGFDGEEDDHHPPIGFSTRFAVPLASRE

XP_011648475.1 uncharacterized protein LOC105434480 [Cucumis sativus]1.7e-7087.84Show/hide
Query:  MAAHQTRPLSTPYSPLNQQQDDLQDIDESIPSNGCGCFRLFGFGFNRNGNYEGRNLLQQKQGKEEELWMVRKLKKLKEVSEMVAGPKWKNFIRKMGGYLK
        MA HQTRP STPYSPL  QQDDLQDID+SI SNGCGCF+LFGFG NRN NYEG NLLQQKQG+EEE WMV++LKK++EVSEMVAGPKWKNFIRKMGGYLK
Subjt:  MAAHQTRPLSTPYSPLNQQQDDLQDIDESIPSNGCGCFRLFGFGFNRNGNYEGRNLLQQKQGKEEELWMVRKLKKLKEVSEMVAGPKWKNFIRKMGGYLK

Query:  GKKQRNRFQYDPESYALNFDGGFDGEEDDHHPPIGFSTRFAVPLASRE
        GKK+RNRFQYDPESYALNFDGGFDGEEDDHHPPIGFS+RFAVPLASRE
Subjt:  GKKQRNRFQYDPESYALNFDGGFDGEEDDHHPPIGFSTRFAVPLASRE

XP_022927019.1 uncharacterized protein LOC111433973 [Cucurbita moschata]3.3e-6683.33Show/hide
Query:  MAAHQTRPLSTPYSPLNQQQDDLQDIDESIPSNGCGCFRLFGFGFNRNGNYEGRNLLQQKQGKEEELWMVRKLKKLKEVSEMVAGPKWKNFIRKMGGYLK
        MA HQTRP  TPYSPLN++Q+ L D DE+IPSNGC CF+LFGFGFNRNGNYE  NLLQQ++G+EEE WMV+KLKKLKEVSEMVAGPKWKNFIRKMGGYLK
Subjt:  MAAHQTRPLSTPYSPLNQQQDDLQDIDESIPSNGCGCFRLFGFGFNRNGNYEGRNLLQQKQGKEEELWMVRKLKKLKEVSEMVAGPKWKNFIRKMGGYLK

Query:  GKKQRNRFQYDPESYALNFDGGFDGEEDDHHPPIGFSTRFAVPLASREQH
        GKKQRNRFQYDPESYALNFDGG DGE+D   PPIGFS+RFAVPLASREQH
Subjt:  GKKQRNRFQYDPESYALNFDGGFDGEEDDHHPPIGFSTRFAVPLASREQH

XP_023003195.1 uncharacterized protein LOC111496880 [Cucurbita maxima]7.4e-6682Show/hide
Query:  MAAHQTRPLSTPYSPLNQQQDDLQDIDESIPSNGCGCFRLFGFGFNRNGNYEGRNLLQQKQGKEEELWMVRKLKKLKEVSEMVAGPKWKNFIRKMGGYLK
        MA HQTRP  TPYSPLN++Q+ L D DE++PSNGC CF+LFGFGFNRNGNYE  NLLQQ++G+EEE WMV+KLKKLKEVSEMVAGPKWKNFIRKMGGYLK
Subjt:  MAAHQTRPLSTPYSPLNQQQDDLQDIDESIPSNGCGCFRLFGFGFNRNGNYEGRNLLQQKQGKEEELWMVRKLKKLKEVSEMVAGPKWKNFIRKMGGYLK

Query:  GKKQRNRFQYDPESYALNFDGGFDGEEDDHHPPIGFSTRFAVPLASREQH
        G+KQRNRFQYDPESYALNFDGG DGE+D   PPIGFS+RFAVPLASREQH
Subjt:  GKKQRNRFQYDPESYALNFDGGFDGEEDDHHPPIGFSTRFAVPLASREQH

XP_038876901.1 uncharacterized protein LOC120069255 [Benincasa hispida]1.2e-7691.33Show/hide
Query:  MAAHQTRPLSTPYSPLNQQQDDLQDIDESIPSNGCGCFRLFGFGFNRNGNYEGRNLLQQKQGKEEELWMVRKLKKLKEVSEMVAGPKWKNFIRKMGGYLK
        MA HQTRP STPYSPLN+QQDDLQD+DE++PSNGCGCFRLFGFGFNRNGNYE RNLLQQKQG+EEE WMVRKLKK+KEVSEMVAGPKWKNF+RKMGGYLK
Subjt:  MAAHQTRPLSTPYSPLNQQQDDLQDIDESIPSNGCGCFRLFGFGFNRNGNYEGRNLLQQKQGKEEELWMVRKLKKLKEVSEMVAGPKWKNFIRKMGGYLK

Query:  GKKQRNRFQYDPESYALNFDGGFDGEEDDHHPPIGFSTRFAVPLASREQH
        GKKQRNRFQYDPESYALNFDGGFDGEED+HHPPIGFS+RFAVPLASREQH
Subjt:  GKKQRNRFQYDPESYALNFDGGFDGEEDDHHPPIGFSTRFAVPLASREQH

TrEMBL top hitse value%identityAlignment
A0A0A0LTG0 Uncharacterized protein8.2e-7187.84Show/hide
Query:  MAAHQTRPLSTPYSPLNQQQDDLQDIDESIPSNGCGCFRLFGFGFNRNGNYEGRNLLQQKQGKEEELWMVRKLKKLKEVSEMVAGPKWKNFIRKMGGYLK
        MA HQTRP STPYSPL  QQDDLQDID+SI SNGCGCF+LFGFG NRN NYEG NLLQQKQG+EEE WMV++LKK++EVSEMVAGPKWKNFIRKMGGYLK
Subjt:  MAAHQTRPLSTPYSPLNQQQDDLQDIDESIPSNGCGCFRLFGFGFNRNGNYEGRNLLQQKQGKEEELWMVRKLKKLKEVSEMVAGPKWKNFIRKMGGYLK

Query:  GKKQRNRFQYDPESYALNFDGGFDGEEDDHHPPIGFSTRFAVPLASRE
        GKK+RNRFQYDPESYALNFDGGFDGEEDDHHPPIGFS+RFAVPLASRE
Subjt:  GKKQRNRFQYDPESYALNFDGGFDGEEDDHHPPIGFSTRFAVPLASRE

A0A1S3B8N4 uncharacterized protein LOC1034873835.7e-7290.6Show/hide
Query:  MAAHQTRPLSTPYSPLN-QQQDDLQDIDESIPSNGCGCFRLFGFGFNRNGNYEGRNLLQQKQGKEEELWMVRKLKKLKEVSEMVAGPKWKNFIRKMGGYL
        MA+HQTRP STPYSPLN QQQDDLQDID+SI SNGCGCF+LFGFG NRN NYEG NLLQQKQG+EEE WMV+KLKK+KEVSEMVAGPKWKNFIRKMGGYL
Subjt:  MAAHQTRPLSTPYSPLN-QQQDDLQDIDESIPSNGCGCFRLFGFGFNRNGNYEGRNLLQQKQGKEEELWMVRKLKKLKEVSEMVAGPKWKNFIRKMGGYL

Query:  KGKKQRNRFQYDPESYALNFDGGFDGEEDDHHPPIGFSTRFAVPLASRE
        KGKKQRNRFQYDPESYALNFDGGFDGEEDDHHPPIGFS+RFAVPLASRE
Subjt:  KGKKQRNRFQYDPESYALNFDGGFDGEEDDHHPPIGFSTRFAVPLASRE

A0A5A7U6Q0 Uncharacterized protein5.7e-7290.6Show/hide
Query:  MAAHQTRPLSTPYSPLN-QQQDDLQDIDESIPSNGCGCFRLFGFGFNRNGNYEGRNLLQQKQGKEEELWMVRKLKKLKEVSEMVAGPKWKNFIRKMGGYL
        MA+HQTRP STPYSPLN QQQDDLQDID+SI SNGCGCF+LFGFG NRN NYEG NLLQQKQG+EEE WMV+KLKK+KEVSEMVAGPKWKNFIRKMGGYL
Subjt:  MAAHQTRPLSTPYSPLN-QQQDDLQDIDESIPSNGCGCFRLFGFGFNRNGNYEGRNLLQQKQGKEEELWMVRKLKKLKEVSEMVAGPKWKNFIRKMGGYL

Query:  KGKKQRNRFQYDPESYALNFDGGFDGEEDDHHPPIGFSTRFAVPLASRE
        KGKKQRNRFQYDPESYALNFDGGFDGEEDDHHPPIGFS+RFAVPLASRE
Subjt:  KGKKQRNRFQYDPESYALNFDGGFDGEEDDHHPPIGFSTRFAVPLASRE

A0A6J1EGU0 uncharacterized protein LOC1114339731.6e-6683.33Show/hide
Query:  MAAHQTRPLSTPYSPLNQQQDDLQDIDESIPSNGCGCFRLFGFGFNRNGNYEGRNLLQQKQGKEEELWMVRKLKKLKEVSEMVAGPKWKNFIRKMGGYLK
        MA HQTRP  TPYSPLN++Q+ L D DE+IPSNGC CF+LFGFGFNRNGNYE  NLLQQ++G+EEE WMV+KLKKLKEVSEMVAGPKWKNFIRKMGGYLK
Subjt:  MAAHQTRPLSTPYSPLNQQQDDLQDIDESIPSNGCGCFRLFGFGFNRNGNYEGRNLLQQKQGKEEELWMVRKLKKLKEVSEMVAGPKWKNFIRKMGGYLK

Query:  GKKQRNRFQYDPESYALNFDGGFDGEEDDHHPPIGFSTRFAVPLASREQH
        GKKQRNRFQYDPESYALNFDGG DGE+D   PPIGFS+RFAVPLASREQH
Subjt:  GKKQRNRFQYDPESYALNFDGGFDGEEDDHHPPIGFSTRFAVPLASREQH

A0A6J1KR34 uncharacterized protein LOC1114968803.6e-6682Show/hide
Query:  MAAHQTRPLSTPYSPLNQQQDDLQDIDESIPSNGCGCFRLFGFGFNRNGNYEGRNLLQQKQGKEEELWMVRKLKKLKEVSEMVAGPKWKNFIRKMGGYLK
        MA HQTRP  TPYSPLN++Q+ L D DE++PSNGC CF+LFGFGFNRNGNYE  NLLQQ++G+EEE WMV+KLKKLKEVSEMVAGPKWKNFIRKMGGYLK
Subjt:  MAAHQTRPLSTPYSPLNQQQDDLQDIDESIPSNGCGCFRLFGFGFNRNGNYEGRNLLQQKQGKEEELWMVRKLKKLKEVSEMVAGPKWKNFIRKMGGYLK

Query:  GKKQRNRFQYDPESYALNFDGGFDGEEDDHHPPIGFSTRFAVPLASREQH
        G+KQRNRFQYDPESYALNFDGG DGE+D   PPIGFS+RFAVPLASREQH
Subjt:  GKKQRNRFQYDPESYALNFDGGFDGEEDDHHPPIGFSTRFAVPLASREQH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G01430.1 BEST Arabidopsis thaliana protein match is: NHL domain-containing protein (TAIR:AT5G14890.1)6.8e-0931.01Show/hide
Query:  SPLNQQQDDLQDIDESI-PSNGCGCFRLFGFGFN----RNGNYEGRNLLQQKQGKEEELWMVRKLKKLKEVSEMVAGPKWKNFIRKMG------------
        SP   + D   D+ E++    GC CF +     +    R G+   + +    + + +E W +R  ++++E SE+VAGP+WK +IR+ G            
Subjt:  SPLNQQQDDLQDIDESI-PSNGCGCFRLFGFGFN----RNGNYEGRNLLQQKQGKEEELWMVRKLKKLKEVSEMVAGPKWKNFIRKMG------------

Query:  ----GYLKGKKQRNR------FQYDPESYALNF-DGGFDGEEDDHHPPIGFSTRFAVP
            G   G    NR      F+YD  SY+LNF DG   G  DD  P   +S RFA P
Subjt:  ----GYLKGKKQRNR------FQYDPESYALNF-DGGFDGEEDDHHPPIGFSTRFAVP

AT3G48020.1 unknown protein8.9e-0938.95Show/hide
Query:  KQGKEEELWMVRKLKKLKEVSEMVAGPKWKNFIRKMG-GYLKGK--KQRNRFQYDPESYALNFDGGFDGEEDDHHPPIG----FSTRFA-VPLAS
        +   +E  W VR   K++E SE+VAGP+WK FIR+      +G+     ++F+YDP SY L+F+   + ++DD    +G    FS R+A VP+AS
Subjt:  KQGKEEELWMVRKLKKLKEVSEMVAGPKWKNFIRKMG-GYLKGK--KQRNRFQYDPESYALNFDGGFDGEEDDHHPPIG----FSTRFA-VPLAS

AT5G14890.1 NHL domain-containing protein1.0e-0934.29Show/hide
Query:  QQDDLQDIDESI-PSNGCGCFRLFGFGFNR----NGNYEGRNLLQQKQGKEEELWMVRKLKKLKEVSEMVAGPKWKNFIRKMG------GYLKG---KKQ
        + D   ++ E++    GC CF L   G ++    NG+   + +    + + +E W V    K++E SE+VAGPKWK FIR+ G      G + G   + +
Subjt:  QQDDLQDIDESI-PSNGCGCFRLFGFGFNR----NGNYEGRNLLQQKQGKEEELWMVRKLKKLKEVSEMVAGPKWKNFIRKMG------GYLKG---KKQ

Query:  RNRFQYDPESYALNFDGGFD-GEEDDHHPPIGFSTRFAVP
           F+YD  SY+LNFD G   G  +D  P   +S RFA P
Subjt:  RNRFQYDPESYALNFDGGFD-GEEDDHHPPIGFSTRFAVP

AT5G25240.1 unknown protein1.4e-1441.82Show/hide
Query:  DIDESIPSNGCGCFRLFGFGFNRNGNYEGRN-------LLQQKQGKEEELWMVRKLKKLKEVSEMVAGPKWKNFIRKMGGYLKGKKQRNRFQYDPESYAL
        D +E+    GCG FR F F   R G+ E R+       L ++++G     W   KLK LKE+SE +AGPKWKNFIR      K  ++   F YD ++Y+L
Subjt:  DIDESIPSNGCGCFRLFGFGFNRNGNYEGRN-------LLQQKQGKEEELWMVRKLKKLKEVSEMVAGPKWKNFIRKMGGYLKGKKQRNRFQYDPESYAL

Query:  NFDGGFDGEE
        NFD G DG++
Subjt:  NFDGGFDGEE

AT5G62865.1 unknown protein5.6e-1143.96Show/hide
Query:  EEELWMVRKLKKLKEVSEMVAGPKWKNFIRKMGGYLKGKKQ---RNRFQYDPESYALNFDGGFDGEEDDHHPPIG----FSTRFA-VPLAS
        +E  W +R   K++E SE+VAGP+WK FIR+     +  +      +FQYDP SY+LNFD   D +E+D +  +G    FSTRFA VP+ S
Subjt:  EEELWMVRKLKKLKEVSEMVAGPKWKNFIRKMGGYLKGKKQ---RNRFQYDPESYALNFDGGFDGEEDDHHPPIG----FSTRFA-VPLAS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGCCCATCAAACCAGACCACTTTCAACGCCTTATTCACCTCTAAACCAGCAACAAGATGACCTTCAAGACATCGACGAGTCTATTCCCTCAAATGGGTGTGGCTG
TTTTCGGCTGTTCGGGTTCGGATTCAATCGGAATGGGAATTACGAAGGTAGAAATCTTCTGCAACAGAAACAGGGGAAGGAAGAGGAGTTATGGATGGTGAGGAAATTGA
AGAAGTTGAAGGAGGTTTCAGAAATGGTGGCTGGACCGAAATGGAAGAATTTCATTAGAAAAATGGGTGGATATTTGAAAGGGAAGAAACAGAGGAATAGATTTCAGTAT
GACCCAGAAAGCTATGCTCTGAATTTCGATGGCGGTTTTGATGGAGAAGAAGATGATCATCATCCGCCAATTGGGTTTTCTACGAGGTTTGCTGTGCCTTTGGCTTCAAG
GGAACAACATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGGCCCATCAAACCAGACCACTTTCAACGCCTTATTCACCTCTAAACCAGCAACAAGATGACCTTCAAGACATCGACGAGTCTATTCCCTCAAATGGGTGTGGCTG
TTTTCGGCTGTTCGGGTTCGGATTCAATCGGAATGGGAATTACGAAGGTAGAAATCTTCTGCAACAGAAACAGGGGAAGGAAGAGGAGTTATGGATGGTGAGGAAATTGA
AGAAGTTGAAGGAGGTTTCAGAAATGGTGGCTGGACCGAAATGGAAGAATTTCATTAGAAAAATGGGTGGATATTTGAAAGGGAAGAAACAGAGGAATAGATTTCAGTAT
GACCCAGAAAGCTATGCTCTGAATTTCGATGGCGGTTTTGATGGAGAAGAAGATGATCATCATCCGCCAATTGGGTTTTCTACGAGGTTTGCTGTGCCTTTGGCTTCAAG
GGAACAACATTGA
Protein sequenceShow/hide protein sequence
MAAHQTRPLSTPYSPLNQQQDDLQDIDESIPSNGCGCFRLFGFGFNRNGNYEGRNLLQQKQGKEEELWMVRKLKKLKEVSEMVAGPKWKNFIRKMGGYLKGKKQRNRFQY
DPESYALNFDGGFDGEEDDHHPPIGFSTRFAVPLASREQH