CuGenDBv2

Gene ID	Lsi06G010740
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Photosystem I P700 chlorophyll a apoprotein A1
Genome location	chr06:20959343..20967155
RNA-Seq Expression	Lsi06G010740
Synteny	Lsi06G010740
Gene Ontology terms	GO:0015979 - photosynthesis (biological process) GO:0018298 - protein-chromophore linkage (biological process) GO:0022900 - electron transport chain (biological process) GO:0009522 - photosystem I (cellular component) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0000287 - magnesium ion binding (molecular function) GO:0009055 - electron transfer activity (molecular function) GO:0016168 - chlorophyll binding (molecular function) GO:0051539 - 4 iron, 4 sulfur cluster binding (molecular function)
InterPro domains	IPR001280 - Photosystem I PsaA/PsaB IPR036408 - Photosystem I PsaA/PsaB superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAE9586345.1 Photosystem I P700 chlorophyll a apoprotein A1 [Lupinus albus]

4.1e-24

91.8

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Query:  MYRTNWDIGHVIKDILEAHKGPFIGQGHKGLYEILTTSWHAQLSINLAMLGSLTIIVAHHI
        MYRTNW IGH +KDILEAHKGPFIGQGHKGLYEILTTSWHAQLSINLAMLGSLTI+VAHH+
Subjt:  MYRTNWDIGHVIKDILEAHKGPFIGQGHKGLYEILTTSWHAQLSINLAMLGSLTIIVAHHI

XP_007134697.1 hypothetical protein PHAVU_010G068700g, partial [Phaseolus vulgaris]

4.1e-24

91.8

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Query:  MYRTNWDIGHVIKDILEAHKGPFIGQGHKGLYEILTTSWHAQLSINLAMLGSLTIIVAHHI
        MYRTNW IGH IKDILEAHKGPFIGQGH+GLYEILTTSWHAQLSINLAMLGSLTI+VAHH+
Subjt:  MYRTNWDIGHVIKDILEAHKGPFIGQGHKGLYEILTTSWHAQLSINLAMLGSLTIIVAHHI

YP_009649363.1 photosystem I P700 apoprotein A1 [Cullen corylifolium]

5.4e-24

93.44

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Query:  MYRTNWDIGHVIKDILEAHKGPFIGQGHKGLYEILTTSWHAQLSINLAMLGSLTIIVAHHI
        MYRTNW IGH IKDILEAHKGPF GQGHKGLYEILTTSWHAQLSINLAMLGSLTIIVAHH+
Subjt:  MYRTNWDIGHVIKDILEAHKGPFIGQGHKGLYEILTTSWHAQLSINLAMLGSLTIIVAHHI

YP_009668986.1 photosystem I P700 apoprotein A1 [Galphimia angustifolia]

2.4e-24

91.8

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Query:  MYRTNWDIGHVIKDILEAHKGPFIGQGHKGLYEILTTSWHAQLSINLAMLGSLTIIVAHHI
        MYRTNW IGHVIKDILEAHKGPF GQGHKGLYEILTTSWHAQLS+NLAMLGSLTI+VAHH+
Subjt:  MYRTNWDIGHVIKDILEAHKGPFIGQGHKGLYEILTTSWHAQLSINLAMLGSLTIIVAHHI

YP_009771156.1 photosystem I P700 chlorophyll a apoprotein A1 [Orbexilum onobrychis]

5.4e-24

93.44

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Query:  MYRTNWDIGHVIKDILEAHKGPFIGQGHKGLYEILTTSWHAQLSINLAMLGSLTIIVAHHI
        MYRTNW IGH IKDILEAHKGPF GQGHKGLYEILTTSWHAQLSINLAMLGSLTIIVAHH+
Subjt:  MYRTNWDIGHVIKDILEAHKGPFIGQGHKGLYEILTTSWHAQLSINLAMLGSLTIIVAHHI

TrEMBL top hits

e value

%identity

Alignment

A0A0Y0UIR7 Photosystem I P700 chlorophyll a apoprotein A1

2.6e-24

93.44

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Query:  MYRTNWDIGHVIKDILEAHKGPFIGQGHKGLYEILTTSWHAQLSINLAMLGSLTIIVAHHI
        MYRTNW IGH IKDILEAHKGPF GQGHKGLYEILTTSWHAQLSINLAMLGSLTIIVAHH+
Subjt:  MYRTNWDIGHVIKDILEAHKGPFIGQGHKGLYEILTTSWHAQLSINLAMLGSLTIIVAHHI

A0A4D6JE79 Photosystem I P700 chlorophyll a apoprotein A1

2.6e-24

93.44

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Query:  MYRTNWDIGHVIKDILEAHKGPFIGQGHKGLYEILTTSWHAQLSINLAMLGSLTIIVAHHI
        MYRTNW IGH IKDILEAHKGPF GQGHKGLYEILTTSWHAQLSINLAMLGSLTIIVAHH+
Subjt:  MYRTNWDIGHVIKDILEAHKGPFIGQGHKGLYEILTTSWHAQLSINLAMLGSLTIIVAHHI

A0A4Y5PPN6 Photosystem I P700 chlorophyll a apoprotein A1

1.2e-24

91.8

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Query:  MYRTNWDIGHVIKDILEAHKGPFIGQGHKGLYEILTTSWHAQLSINLAMLGSLTIIVAHHI
        MYRTNW IGHVIKDILEAHKGPF GQGHKGLYEILTTSWHAQLS+NLAMLGSLTI+VAHH+
Subjt:  MYRTNWDIGHVIKDILEAHKGPFIGQGHKGLYEILTTSWHAQLSINLAMLGSLTIIVAHHI

A0A6A5LHH2 Photosystem I P700 chlorophyll a apoprotein A1

2.0e-24

91.8

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Query:  MYRTNWDIGHVIKDILEAHKGPFIGQGHKGLYEILTTSWHAQLSINLAMLGSLTIIVAHHI
        MYRTNW IGH +KDILEAHKGPFIGQGHKGLYEILTTSWHAQLSINLAMLGSLTI+VAHH+
Subjt:  MYRTNWDIGHVIKDILEAHKGPFIGQGHKGLYEILTTSWHAQLSINLAMLGSLTIIVAHHI

V7AR62 Uncharacterized protein (Fragment)

2.0e-24

91.8

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Query:  MYRTNWDIGHVIKDILEAHKGPFIGQGHKGLYEILTTSWHAQLSINLAMLGSLTIIVAHHI
        MYRTNW IGH IKDILEAHKGPFIGQGH+GLYEILTTSWHAQLSINLAMLGSLTI+VAHH+
Subjt:  MYRTNWDIGHVIKDILEAHKGPFIGQGHKGLYEILTTSWHAQLSINLAMLGSLTIIVAHHI

SwissProt top hits

e value

%identity

Alignment

A4GG97 Photosystem I P700 chlorophyll a apoprotein A1

9.2e-27

91.8

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Query:  MYRTNWDIGHVIKDILEAHKGPFIGQGHKGLYEILTTSWHAQLSINLAMLGSLTIIVAHHI
        MYRTNW IGH IKDILEAHKGPF GQGHKGLYEILTTSWHAQLSINLAMLGSLTI+VAHH+
Subjt:  MYRTNWDIGHVIKDILEAHKGPFIGQGHKGLYEILTTSWHAQLSINLAMLGSLTIIVAHHI

P56766 Photosystem I P700 chlorophyll a apoprotein A1

1.6e-26

91.8

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Query:  MYRTNWDIGHVIKDILEAHKGPFIGQGHKGLYEILTTSWHAQLSINLAMLGSLTIIVAHHI
        MYRTNW IGH IKDILEAHKGPF GQGHKGLYEILTTSWHAQLS+NLAMLGSLTIIVAHH+
Subjt:  MYRTNWDIGHVIKDILEAHKGPFIGQGHKGLYEILTTSWHAQLSINLAMLGSLTIIVAHHI

P58310 Photosystem I P700 chlorophyll a apoprotein A1

9.2e-27

93.44

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Query:  MYRTNWDIGHVIKDILEAHKGPFIGQGHKGLYEILTTSWHAQLSINLAMLGSLTIIVAHHI
        MYRTNW IGH IKDILEAHKGPF GQGHKGLYEILTTSWHAQLSINLAMLGSLTIIVAHH+
Subjt:  MYRTNWDIGHVIKDILEAHKGPFIGQGHKGLYEILTTSWHAQLSINLAMLGSLTIIVAHHI

Q2PMU3 Photosystem I P700 chlorophyll a apoprotein A1

9.2e-27

91.8

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Query:  MYRTNWDIGHVIKDILEAHKGPFIGQGHKGLYEILTTSWHAQLSINLAMLGSLTIIVAHHI
        MYRTNW IGH IKDILEAHKGPF GQGHKGLYEILTTSWHAQLSINLAMLGSLTI+VAHH+
Subjt:  MYRTNWDIGHVIKDILEAHKGPFIGQGHKGLYEILTTSWHAQLSINLAMLGSLTIIVAHHI

Q2QD89 Photosystem I P700 chlorophyll a apoprotein A1

9.2e-27

93.44

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Query:  MYRTNWDIGHVIKDILEAHKGPFIGQGHKGLYEILTTSWHAQLSINLAMLGSLTIIVAHHI
        MYRTNW IGH IKDILEAHKGPF GQGHKGLYEILTTSWHAQLSINLAMLGSLTIIVAHH+
Subjt:  MYRTNWDIGHVIKDILEAHKGPFIGQGHKGLYEILTTSWHAQLSINLAMLGSLTIIVAHHI

Arabidopsis top hits

e value

%identity

Alignment

ATCG00340.1 Photosystem I, PsaA/PsaB protein

8.6e-12

47.56

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Query:  MYRTNWDIGHVIKDILEAH--KGPFIGQGHKGLYEILTTSWHAQLSINLAMLGSLTIIVAHHI----ILSYITSVFFSAAAV
        MYRTN+ IGH IKD+LEAH   G  +G+GHKGLY+ +  S H QL + LA LG +T +VA H+      ++I   F + AA+
Subjt:  MYRTNWDIGHVIKDILEAH--KGPFIGQGHKGLYEILTTSWHAQLSINLAMLGSLTIIVAHHI----ILSYITSVFFSAAAV

ATCG00350.1 Photosystem I, PsaA/PsaB protein

1.1e-27

91.8

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Query:  MYRTNWDIGHVIKDILEAHKGPFIGQGHKGLYEILTTSWHAQLSINLAMLGSLTIIVAHHI
        MYRTNW IGH IKDILEAHKGPF GQGHKGLYEILTTSWHAQLS+NLAMLGSLTIIVAHH+
Subjt:  MYRTNWDIGHVIKDILEAHKGPFIGQGHKGLYEILTTSWHAQLSINLAMLGSLTIIVAHHI

Sequences

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CDS sequence

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ATGTATAGGACCAACTGGGACATTGGTCATGTTATAAAAGATATTTTAGAGGCTCATAAAGGTCCATTTATAGGCCAGGGCCATAAAGGACTATATGAGATCCTAACAAC
GTCATGGCATGCTCAATTATCTATTAACCTAGCTATGTTAGGCTCTTTAACCATTATTGTAGCTCACCATATAATTCTATCATATATAACATCAGTTTTCTTTAGTGCTG
CAGCTGTCGTGCTGGCGATCGTCGATGGTGCTAAAATTGCTATACAAGCAAGGAATATAAGTGTTAACTTCATTGTGGATACGTTCAGTGACTTTGGTGCCATTAATTCT
ATCATATATAACATCAGTTTAATTCTATCATATATAACATCAGTTTTCTTTAGTGCTGCAGCTGTCGTGCTGGCCATCGTCGATGGTGCTAAAATTGCTATACAAACAAG
GAACATAAGTGTTAACTTCATTGTGGATACATTCAGTGACTTTGCCGCCATTGTTTGTAGAAAAATGAGATTCCAACCTAAGTATAACTCAATTGTTAAGATGTATGACC
TCAACGAAAATGTCAGATTAACAAAATTGCAATGGAGAGATATAAAATCATCTAATAAAAACCGGGTTTTTAGGGTTGTGTGTTTGTTTAGTGGGTTCCATTACACAAAC
AAGGTGGATGGGTTTAGGGAAGACGATTTCAAAGTGGATCCATTGTTTTTTTACCCTGCAAAGATATCAATGGTTTATGCTAACAATGAGTGGGGAATACATATTTGGTG
CTAG

mRNA sequence

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Protein sequence

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MYRTNWDIGHVIKDILEAHKGPFIGQGHKGLYEILTTSWHAQLSINLAMLGSLTIIVAHHIILSYITSVFFSAAAVVLAIVDGAKIAIQARNISVNFIVDTFSDFGAINS
IIYNISLILSYITSVFFSAAAVVLAIVDGAKIAIQTRNISVNFIVDTFSDFAAIVCRKMRFQPKYNSIVKMYDLNENVRLTKLQWRDIKSSNKNRVFRVVCLFSGFHYTN
KVDGFREDDFKVDPLFFYPAKISMVYANNEWGIHIWC

Lsi06G010740 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome