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Lsi06G010810 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi06G010810
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionDNA-directed RNA polymerase subunit beta
Genome locationchr06:21065442..21066276
RNA-Seq ExpressionLsi06G010810
SyntenyLsi06G010810
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004146667.1 uncharacterized protein LOC101206545 [Cucumis sativus]2.3e-5288.89Show/hide
Query:  MAIVDSSFIFIGFSAVPYPLSNNNNGRKFRITSAKRTQNSDSDSTSSTQANQLKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKESEDLL
        MA+VDSSFIFIGFS VP+PL NNNNGRKF ITSAKRTQ+SDSDS SSTQ NQ KFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKE+EDLL
Subjt:  MAIVDSSFIFIGFSAVPYPLSNNNNGRKFRITSAKRTQNSDSDSTSSTQANQLKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKESEDLL

Query:  KIGAFLVVPFCVFLVFSFSKLDLDSN
        KIGA LVVPFCVFLVFSFSK D DS+
Subjt:  KIGAFLVVPFCVFLVFSFSKLDLDSN

XP_008443827.1 PREDICTED: uncharacterized protein LOC103487329 [Cucumis melo]1.1e-4986.82Show/hide
Query:  MAIVDSSFIFIGFSAVPYPLSN---NNNGRKFRITSAKRTQNSDSDSTSSTQANQLKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKESE
        MA+VDSSFIFIG SAVP+PL N   NNNGRKF ITSAKRTQ  DSDSTSSTQ NQ KFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKE+E
Subjt:  MAIVDSSFIFIGFSAVPYPLSN---NNNGRKFRITSAKRTQNSDSDSTSSTQANQLKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKESE

Query:  DLLKIGAFLVVPFCVFLVFSFSKLDLDSN
        +LLKIGAFLVVPFCVFLVFSFSK D DS+
Subjt:  DLLKIGAFLVVPFCVFLVFSFSKLDLDSN

XP_022933449.1 uncharacterized protein LOC111440861 [Cucurbita moschata]3.5e-4080.17Show/hide
Query:  MAIVDSSFIFIGFSAVPYP-LSNNNNGRKFRITSAKRTQNSDSDSTSSTQANQLKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKESEDL
        M I DSSFIF G SA+P+P L +NNN RKF  TSAKRT   DSDS SST   QLKFPSLRV+NPLLARSVV+VLGLGFVDAGYSGDWSRIGAITKE+EDL
Subjt:  MAIVDSSFIFIGFSAVPYP-LSNNNNGRKFRITSAKRTQNSDSDSTSSTQANQLKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKESEDL

Query:  LKIGAFLVVPFCVFLVFSFSK
        LKIGAFLVVPFCVFL+FSFS+
Subjt:  LKIGAFLVVPFCVFLVFSFSK

XP_023531156.1 uncharacterized protein LOC111793484 [Cucurbita pepo subsp. pepo]1.4e-4180.17Show/hide
Query:  MAIVDSSFIFIGFSAVPYP-LSNNNNGRKFRITSAKRTQNSDSDSTSSTQANQLKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKESEDL
        M I DS+FIF G SA+P+P L +NNN RKF  TSAKRT +SDSDS SST   QLKFPSLRV+NPLLARSVV+VLGLGFVDAGYSGDWSRIGAITKE+EDL
Subjt:  MAIVDSSFIFIGFSAVPYP-LSNNNNGRKFRITSAKRTQNSDSDSTSSTQANQLKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKESEDL

Query:  LKIGAFLVVPFCVFLVFSFSK
        LKIGAFLVVPFCVFL+FSFS+
Subjt:  LKIGAFLVVPFCVFLVFSFSK

XP_038879768.1 uncharacterized protein LOC120071517 [Benincasa hispida]3.5e-4884.92Show/hide
Query:  MAIVDSSFIFIGFSAVPYPLSNNNNGRKFRITSAKRTQNSDSDSTSSTQANQLKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKESEDLL
        MA+V+SSFIFIG S VPYPLSNNN+ RKFRITSAK T++SDSDS SS    QLKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIG ITKESE+LL
Subjt:  MAIVDSSFIFIGFSAVPYPLSNNNNGRKFRITSAKRTQNSDSDSTSSTQANQLKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKESEDLL

Query:  KIGAFLVVPFCVFLVFSFSKLDLDSN
        KIGAFLVVPFCVFLVFSFS+LD DS+
Subjt:  KIGAFLVVPFCVFLVFSFSKLDLDSN

TrEMBL top hitse value%identityAlignment
A0A0A0LWH4 Uncharacterized protein1.1e-5288.89Show/hide
Query:  MAIVDSSFIFIGFSAVPYPLSNNNNGRKFRITSAKRTQNSDSDSTSSTQANQLKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKESEDLL
        MA+VDSSFIFIGFS VP+PL NNNNGRKF ITSAKRTQ+SDSDS SSTQ NQ KFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKE+EDLL
Subjt:  MAIVDSSFIFIGFSAVPYPLSNNNNGRKFRITSAKRTQNSDSDSTSSTQANQLKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKESEDLL

Query:  KIGAFLVVPFCVFLVFSFSKLDLDSN
        KIGA LVVPFCVFLVFSFSK D DS+
Subjt:  KIGAFLVVPFCVFLVFSFSKLDLDSN

A0A1S3B903 uncharacterized protein LOC1034873295.2e-5086.82Show/hide
Query:  MAIVDSSFIFIGFSAVPYPLSN---NNNGRKFRITSAKRTQNSDSDSTSSTQANQLKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKESE
        MA+VDSSFIFIG SAVP+PL N   NNNGRKF ITSAKRTQ  DSDSTSSTQ NQ KFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKE+E
Subjt:  MAIVDSSFIFIGFSAVPYPLSN---NNNGRKFRITSAKRTQNSDSDSTSSTQANQLKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKESE

Query:  DLLKIGAFLVVPFCVFLVFSFSKLDLDSN
        +LLKIGAFLVVPFCVFLVFSFSK D DS+
Subjt:  DLLKIGAFLVVPFCVFLVFSFSKLDLDSN

A0A6J1C0R6 uncharacterized protein LOC1110073012.1e-3573.73Show/hide
Query:  IVDSSFIFIGFSAVPYPLSNNNNGRKFRITSAKRTQNSDSDSTSSTQANQLKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKESEDLLKI
        + DS+FIF G SAV   L N NN R FR   AKRT   DS +T S Q NQ +FPSLRV NPL+AR VVSVLGLGFVDAGYSGDWSRIGAITKESEDLLKI
Subjt:  IVDSSFIFIGFSAVPYPLSNNNNGRKFRITSAKRTQNSDSDSTSSTQANQLKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKESEDLLKI

Query:  GAFLVVPFCVFLVFSFSK
        GAFLVVPFCVFL+ SF+K
Subjt:  GAFLVVPFCVFLVFSFSK

A0A6J1EZT4 uncharacterized protein LOC1114408611.7e-4080.17Show/hide
Query:  MAIVDSSFIFIGFSAVPYP-LSNNNNGRKFRITSAKRTQNSDSDSTSSTQANQLKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKESEDL
        M I DSSFIF G SA+P+P L +NNN RKF  TSAKRT   DSDS SST   QLKFPSLRV+NPLLARSVV+VLGLGFVDAGYSGDWSRIGAITKE+EDL
Subjt:  MAIVDSSFIFIGFSAVPYP-LSNNNNGRKFRITSAKRTQNSDSDSTSSTQANQLKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKESEDL

Query:  LKIGAFLVVPFCVFLVFSFSK
        LKIGAFLVVPFCVFL+FSFS+
Subjt:  LKIGAFLVVPFCVFLVFSFSK

A0A6J1KT82 uncharacterized protein LOC1114980162.2e-4080.17Show/hide
Query:  MAIVDSSFIFIGFSAVPYPL-SNNNNGRKFRITSAKRTQNSDSDSTSSTQANQLKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKESEDL
        M I DSSFIF G SA+P+PL  +NNN RKF  TSAKRT   DSDS SST   QLKFPSLRVSNPLLARSVV+VLGLGFVDAGYSGDWSRIGAITKE+ED 
Subjt:  MAIVDSSFIFIGFSAVPYPL-SNNNNGRKFRITSAKRTQNSDSDSTSSTQANQLKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKESEDL

Query:  LKIGAFLVVPFCVFLVFSFSK
        LKIGAFLVVPFCVFL+FSFS+
Subjt:  LKIGAFLVVPFCVFLVFSFSK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G30845.1 unknown protein3.6e-1948.54Show/hide
Query:  NNNNGRKFRITSAKRTQNSDSDSTSSTQANQLKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKESEDLLKIGAFLVVPFCVFLVFSFSKL
        N+N  R F       ++  D    S+ +   L+   ++V N ++ARS ++VL LGF+DAGYSGDWSRIG I+KE+E+LLKI AFLVVP C+FL  SFS  
Subjt:  NNNNGRKFRITSAKRTQNSDSDSTSSTQANQLKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKESEDLLKIGAFLVVPFCVFLVFSFSKL

Query:  DLD
          D
Subjt:  DLD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGATCGTAGATTCAAGTTTTATCTTCATCGGTTTCTCCGCCGTACCTTATCCCCTTTCGAACAACAATAATGGCAGAAAATTCCGAATCACATCGGCAAAACGTAC
ACAAAATTCCGATTCCGATTCCACTTCATCAACACAAGCAAATCAACTCAAATTTCCCTCACTCAGAGTATCAAATCCGCTTCTCGCCCGATCTGTCGTTTCGGTTCTCG
GATTAGGGTTCGTCGATGCAGGGTACAGTGGTGATTGGTCTAGAATTGGAGCAATTACGAAGGAGAGCGAAGATTTGCTCAAGATTGGAGCCTTTTTGGTGGTTCCGTTT
TGCGTATTTCTGGTTTTTTCTTTCTCGAAATTAGATTTAGATTCGAATTCTTCTTAA
mRNA sequenceShow/hide mRNA sequence
CAAGAGGGTTATCGGAATTAACTTTTAAGATGGTGGAATATTCTAAGAAATTTAATGGTAGAATTCGTATTGCCCACTTGTTCTCTGTCATTCATGAAAAAGGATGCGGC
CGTAATTGATTTCCACGAGCATTCATTTCAGATTTTCCGTAATAATCCAACCAGACGACAATGGCGATCGTAGATTCAAGTTTTATCTTCATCGGTTTCTCCGCCGTACC
TTATCCCCTTTCGAACAACAATAATGGCAGAAAATTCCGAATCACATCGGCAAAACGTACACAAAATTCCGATTCCGATTCCACTTCATCAACACAAGCAAATCAACTCA
AATTTCCCTCACTCAGAGTATCAAATCCGCTTCTCGCCCGATCTGTCGTTTCGGTTCTCGGATTAGGGTTCGTCGATGCAGGGTACAGTGGTGATTGGTCTAGAATTGGA
GCAATTACGAAGGAGAGCGAAGATTTGCTCAAGATTGGAGCCTTTTTGGTGGTTCCGTTTTGCGTATTTCTGGTTTTTTCTTTCTCGAAATTAGATTTAGATTCGAATTC
TTCTTAAGTGTATGTATTTGATAGCATCTCAAAAATAAAAAAAGATTAACTCTGCAAGTTGAATCAAATTATGCCTTAGTGTTTGTCTCTTAGACCAACTATATATAGCT
GGATCTACCAATGAGATTATACATAACAATTAAAGAGATATTTGAGGTACGCTAAAAATATTCTTAATTCTCTATTCTCT
Protein sequenceShow/hide protein sequence
MAIVDSSFIFIGFSAVPYPLSNNNNGRKFRITSAKRTQNSDSDSTSSTQANQLKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKESEDLLKIGAFLVVPF
CVFLVFSFSKLDLDSNSS