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Lsi06G010940 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi06G010940
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionGABA-A epsilon subunit splice variant-like protein
Genome locationchr06:21227587..21229668
RNA-Seq ExpressionLsi06G010940
SyntenyLsi06G010940
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BAD33440.1 GABA-A epsilon subunit splice variant-like protein [Oryza sativa Japonica Group]1.3e-0449.57Show/hide
Query:  PDPPPSRP-PDPEPARDPAYEPASDPESEPDPEEEELELELELDPEPEPEPEPEPEPEPLPPSPMPIPAPIPTPTPPKSMPKSFLATRLWDKTKRDETSR
        P+PPP RP P P P+  P      DPE +PDPE +      EL+PEPEPEP+PEPEPE  PP+P PIP PIP+P PP+ +P+SFLA RL      D  + 
Subjt:  PDPPPSRP-PDPEPARDPAYEPASDPESEPDPEEEELELELELDPEPEPEPEPEPEPEPLPPSPMPIPAPIPTPTPPKSMPKSFLATRLWDKTKRDETSR

Query:  AARTK--DLKQLIII
           TK  D  Q I++
Subjt:  AARTK--DLKQLIII

KAB8110605.1 hypothetical protein EE612_047933, partial [Oryza sativa]1.3e-0449.57Show/hide
Query:  PDPPPSRP-PDPEPARDPAYEPASDPESEPDPEEEELELELELDPEPEPEPEPEPEPEPLPPSPMPIPAPIPTPTPPKSMPKSFLATRLWDKTKRDETSR
        P+PPP RP P P P+  P      DPE +PDPE +      EL+PEPEPEP+PEPEPE  PP+P PIP PIP+P PP+ +P+SFLA RL      D  + 
Subjt:  PDPPPSRP-PDPEPARDPAYEPASDPESEPDPEEEELELELELDPEPEPEPEPEPEPEPLPPSPMPIPAPIPTPTPPKSMPKSFLATRLWDKTKRDETSR

Query:  AARTK--DLKQLIII
           TK  D  Q I++
Subjt:  AARTK--DLKQLIII

KAF4370367.1 hypothetical protein F8388_016104 [Cannabis sativa]9.9e-1059.82Show/hide
Query:  PDP--EPARDPAYEPASDPESEP--DPEEEELELELELDPEPEPEPEPEPEPEPLPPSPMPIPAPIPT---PTPPKSMPKSFLAT-RL-WDKTKRDETSR
        PDP  +PA+DPA EPASDP   P  D EEEELELE EL+P P+PEPEP P P P PPSP+PIPAPIP    P PP+S P SFLAT RL  D  K+ + ++
Subjt:  PDP--EPARDPAYEPASDPESEP--DPEEEELELELELDPEPEPEPEPEPEPEPLPPSPMPIPAPIPT---PTPPKSMPKSFLAT-RL-WDKTKRDETSR

Query:  AARTKDLKQLII
        A   K LK+ II
Subjt:  AARTKDLKQLII

KAG7023419.1 hypothetical protein SDJN02_14444, partial [Cucurbita argyrosperma subsp. argyrosperma]5.1e-0664.41Show/hide
Query:  PDPEEEELELELELDPEPEPEPEPEPEPEPLPPSPMPIPAPIPTPTPPKSMPKSFLATR
        P+ EE + + E EL+P+P+P+P+PEP+PEPLPP P PIP PIPTP+PP+S P+SFLATR
Subjt:  PDPEEEELELELELDPEPEPEPEPEPEPEPLPPSPMPIPAPIPTPTPPKSMPKSFLATR

XP_015611192.1 protein TsetseEP [Oryza sativa Japonica Group]1.3e-0449.57Show/hide
Query:  PDPPPSRP-PDPEPARDPAYEPASDPESEPDPEEEELELELELDPEPEPEPEPEPEPEPLPPSPMPIPAPIPTPTPPKSMPKSFLATRLWDKTKRDETSR
        P+PPP RP P P P+  P      DPE +PDPE +      EL+PEPEPEP+PEPEPE  PP+P PIP PIP+P PP+ +P+SFLA RL      D  + 
Subjt:  PDPPPSRP-PDPEPARDPAYEPASDPESEPDPEEEELELELELDPEPEPEPEPEPEPEPLPPSPMPIPAPIPTPTPPKSMPKSFLATRLWDKTKRDETSR

Query:  AARTK--DLKQLIII
           TK  D  Q I++
Subjt:  AARTK--DLKQLIII

TrEMBL top hitse value%identityAlignment
A0A0E0IJR6 Uncharacterized protein5.5e-0650Show/hide
Query:  PDPPPSRP-PDPEPARDPAYEPASDPESEPDPE-EEELELELELDPEPEPEPEPEPEPEPLPPSPMPIPAPIPTPTPPKSMPKSFLATRLWDKTKRDETS
        P+PPP RP P P P+  P      DPE +PDPE + ELE E + +P+PE EPEP+PEPEP PP+P PIP PIP+P PP+ +P+SFLA RL      D  +
Subjt:  PDPPPSRP-PDPEPARDPAYEPASDPESEPDPE-EEELELELELDPEPEPEPEPEPEPEPLPPSPMPIPAPIPTPTPPKSMPKSFLATRLWDKTKRDETS

Query:  RAARTK--DLKQLIII
            TK  D  Q I++
Subjt:  RAARTK--DLKQLIII

A0A1J3H1Q1 Uncharacterized protein (Fragment)4.6e-1356.25Show/hide
Query:  PDPPPSRPPDPEPARDPAYEPASDPESEPDP---EEEELEL----ELELDPEPEPEPEPEPEPEPLPPSPMPIPAPIPTPTPPKSMPKSFLATRLWDKTK
        P P P RPP+P+PARDPAY+PASDP S P P   EEE LEL    EL+  P P+P+P P P+P+P PP PMP+P PIPTP PP+S PKSFLA RL +   
Subjt:  PDPPPSRPPDPEPARDPAYEPASDPESEPDP---EEEELEL----ELELDPEPEPEPEPEPEPEPLPPSPMPIPAPIPTPTPPKSMPKSFLATRLWDKTK

Query:  RDETSRAARTKD
            ++  RT D
Subjt:  RDETSRAARTKD

A0A7C8YI06 Uncharacterized protein (Fragment)1.9e-0654.72Show/hide
Query:  PDPPPSRPPDP----------------EPARDPAYEPASDPESEPDP----EEEELELELELDPEPEPEPEPEPEPEPLPPSPMPIPAPIPTPTPPKSMP
        P PPP  PP+P                EPA DPA EPAS+P  +PDP    E EE ELELELDP  +P+P P PEP P PP+P P P P PTPTPP+S+P
Subjt:  PDPPPSRPPDP----------------EPARDPAYEPASDPESEPDP----EEEELELELELDPEPEPEPEPEPEPEPLPPSPMPIPAPIPTPTPPKSMP

Query:  KSFLAT
        +SFLAT
Subjt:  KSFLAT

A0A7C8YI76 Uncharacterized protein (Fragment)1.6e-0553.85Show/hide
Query:  PDPPPSRPPDP----------------EPARDPAYEPASDPESEPDP----EEEELELELELDPEPEPEPEPEPEPEPLPPSPMPIPAPIPTPTPPKSMP
        P PPP  PP+P                EPA DPA EPAS+P  +PDP    E EE ELELELDP  +P+P P PEP P PP+P P P P PTPTPP+S+P
Subjt:  PDPPPSRPPDP----------------EPARDPAYEPASDPESEPDP----EEEELELELELDPEPEPEPEPEPEPEPLPPSPMPIPAPIPTPTPPKSMP

Query:  KSFL
        +SFL
Subjt:  KSFL

A0A7J6FIB3 Uncharacterized protein4.8e-1059.82Show/hide
Query:  PDP--EPARDPAYEPASDPESEP--DPEEEELELELELDPEPEPEPEPEPEPEPLPPSPMPIPAPIPT---PTPPKSMPKSFLAT-RL-WDKTKRDETSR
        PDP  +PA+DPA EPASDP   P  D EEEELELE EL+P P+PEPEP P P P PPSP+PIPAPIP    P PP+S P SFLAT RL  D  K+ + ++
Subjt:  PDP--EPARDPAYEPASDPESEP--DPEEEELELELELDPEPEPEPEPEPEPEPLPPSPMPIPAPIPT---PTPPKSMPKSFLAT-RL-WDKTKRDETSR

Query:  AARTKDLKQLII
        A   K LK+ II
Subjt:  AARTKDLKQLII

SwissProt top hitse value%identityAlignment
Q8T4N5 Protein TsetseEP5.9e-0556.47Show/hide
Query:  PDPPPSRPPDPEPARDPAYEPASDPESEPDPE-EEELELELELDPEPEPEPEPEPEPEPLP-PSPMPIPAPIPTPTP-PKSMPKS
        P+P P   P+PEP  +P  EP  +PE EP+PE E E E E E +PEPEPEPEPEPEPEP P P P P P P P P P P+  P+S
Subjt:  PDPPPSRPPDPEPARDPAYEPASDPESEPDPE-EEELELELELDPEPEPEPEPEPEPEPLP-PSPMPIPAPIPTPTP-PKSMPKS

Q95P09 Protein TsetseEP1.5e-0557.65Show/hide
Query:  PDPPPSRPPDPEPARDPAYEPASDPESEPDPE-EEELELELELDPEPEPEPEPEPEPEPLP-PSPMPIPAPIPTPTP-PKSMPKS
        P+P P   P+PEP  +P  EP  +PE EP+PE E E E E E +PEPEPEPEPEPEPEP P P P P P P P P P P+S P S
Subjt:  PDPPPSRPPDPEPARDPAYEPASDPESEPDPE-EEELELELELDPEPEPEPEPEPEPEPLP-PSPMPIPAPIPTPTP-PKSMPKS

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGACGCCCGACCCTCCACCTTCTCGACCACCCGATCCAGAACCTGCTCGAGACCCAGCATACGAGCCTGCTTCAGATCCAGAGTCAGAACCCGACCCAGAAGAAGA
AGAGCTAGAGCTAGAACTCGAACTTGATCCAGAGCCAGAGCCAGAGCCAGAACCAGAACCCGAGCCCGAACCACTTCCACCGAGTCCAATGCCAATTCCAGCTCCAATCC
CAACGCCTACCCCACCCAAGTCAATGCCCAAGTCTTTCCTGGCAACTCGGCTGTGGGATAAAACAAAAAGAGACGAAACAAGCAGAGCAGCAAGAACCAAGGATTTGAAA
CAACTCATTATTATTGATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGACGCCCGACCCTCCACCTTCTCGACCACCCGATCCAGAACCTGCTCGAGACCCAGCATACGAGCCTGCTTCAGATCCAGAGTCAGAACCCGACCCAGAAGAAGA
AGAGCTAGAGCTAGAACTCGAACTTGATCCAGAGCCAGAGCCAGAGCCAGAACCAGAACCCGAGCCCGAACCACTTCCACCGAGTCCAATGCCAATTCCAGCTCCAATCC
CAACGCCTACCCCACCCAAGTCAATGCCCAAGTCTTTCCTGGCAACTCGGCTGTGGGATAAAACAAAAAGAGACGAAACAAGCAGAGCAGCAAGAACCAAGGATTTGAAA
CAACTCATTATTATTGATTAA
Protein sequenceShow/hide protein sequence
MATPDPPPSRPPDPEPARDPAYEPASDPESEPDPEEEELELELELDPEPEPEPEPEPEPEPLPPSPMPIPAPIPTPTPPKSMPKSFLATRLWDKTKRDETSRAARTKDLK
QLIIID