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Lsi06G010960 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi06G010960
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionglycine-rich cell wall structural protein 2-like
Genome locationchr06:21233593..21233991
RNA-Seq ExpressionLsi06G010960
SyntenyLsi06G010960
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008443814.1 PREDICTED: glycine-rich protein DOT1-like [Cucumis melo]3.7e-3788.97Show/hide
Query:  MASIKAISVLCLVLCMSVIESQARRVARKDLGLDLGGLGAGLGIGLGLGLGGGSGSGAGA--GSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGS
        MASIKAI VLCLVLCMSVIES+A RVARK+LGLDLGGLG GLG+GLGLG+GGGSGSGAGA  GSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGS
Subjt:  MASIKAISVLCLVLCMSVIESQARRVARKDLGLDLGGLGAGLGIGLGLGLGGGSGSGAGA--GSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGS

Query:  YAGSRAGSGSGRGNG--GGEGHGYGEGRGYGEGGNN
        YAGSRAGSGS R NG  GGE HGYGEG GYGEGGNN
Subjt:  YAGSRAGSGSGRGNG--GGEGHGYGEGRGYGEGGNN

XP_011656027.1 glycine-rich protein DOT1 [Cucumis sativus]1.6e-4092.54Show/hide
Query:  MASIKAISVLCLVLCMSVIESQARRVARKDLGLDLGGLGAGLGIGLGLGLGGGSGSGAGAGSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYA
        MASIKAI+VLCLVLCMSVIES+A RVARKDLGLDLGGLG GLG+GLGLGLGGGSGSGAGAGSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYA
Subjt:  MASIKAISVLCLVLCMSVIESQARRVARKDLGLDLGGLGAGLGIGLGLGLGGGSGSGAGAGSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYA

Query:  GSRAGSGSGRGNG--GGEGHGYGEGRGYGEGGNN
        GSRAGSGSG  NG  GGEGHGYGEG GYGEGGNN
Subjt:  GSRAGSGSGRGNG--GGEGHGYGEGRGYGEGGNN

XP_022921885.1 glycine-rich protein DOT1-like [Cucurbita moschata]1.5e-3080.58Show/hide
Query:  MASIKAISVLCLVLCMSVIESQARRVARKDLGLDLGGLGAGLGIGLGLGLGGGSGSGAGAGSGSGSGSGSYSS--SSSHSSSSSYGGSGAGSEAGSYAGS
        M SI+AI+VLC V+CMS IESQ  RVARKDLGLDLGGLG GLG+GLGLGLGGGSGSG+G+GSGSGSGSGS S   SSS SSSSSYGGSGAGSEAGSYAGS
Subjt:  MASIKAISVLCLVLCMSVIESQARRVARKDLGLDLGGLGAGLGIGLGLGLGGGSGSGAGAGSGSGSGSGSYSS--SSSHSSSSSYGGSGAGSEAGSYAGS

Query:  YAGSRAGSGSGR-----GNGGGEGHGYGEGRGYGEGGNN
        YAGSR GS SGR     G+G GEG GYGEGRGYGEGGNN
Subjt:  YAGSRAGSGSGR-----GNGGGEGHGYGEGRGYGEGGNN

XP_023515820.1 putative glycine-rich cell wall structural protein 1 [Cucurbita pepo subsp. pepo]1.3e-2977.14Show/hide
Query:  MASIKAISVLCLVLCMSVIESQARRVARKDLGLDLGGLGAGLGIGLGLGLGGGSGSGAGAGSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYA
        M SI++I+VLC V+CMS IESQ  RVARKDLGLDLGGLG GLG+GLGLGLGGGSGSG+G+GSGSGSGSGSY  SSS SSSSSYGGSGAGSEAGSYAGSYA
Subjt:  MASIKAISVLCLVLCMSVIESQARRVARKDLGLDLGGLGAGLGIGLGLGLGGGSGSGAGAGSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYA

Query:  GSRAGSGSGR-----------GNGGGEGHGYGEGRGYGEG
        GSR GS SGR           G GGG G GYGEGRGYGEG
Subjt:  GSRAGSGSGR-----------GNGGGEGHGYGEGRGYGEG

XP_038880102.1 glycine-rich cell wall structural protein 2-like [Benincasa hispida]6.6e-4294.03Show/hide
Query:  MASIKAISVLCLVLCMSVIESQARRVARKDLGLDLGGLGAGLGIGLGLGLGGGSGSGAGAGSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYA
        MA+IKAI+VLCLVLCMSVIES A RVARKDLGLDLGGLG GLG+GLGLGLGGGSGSGAGAGSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYA
Subjt:  MASIKAISVLCLVLCMSVIESQARRVARKDLGLDLGGLGAGLGIGLGLGLGGGSGSGAGAGSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYA

Query:  GSRAGSGSGRGN--GGGEGHGYGEGRGYGEGGNN
        GSRAGSGSGRGN  GGGEGHGYGEGRGYGEGGNN
Subjt:  GSRAGSGSGRGN--GGGEGHGYGEGRGYGEGGNN

TrEMBL top hitse value%identityAlignment
A0A0A0LW94 Uncharacterized protein7.8e-4192.54Show/hide
Query:  MASIKAISVLCLVLCMSVIESQARRVARKDLGLDLGGLGAGLGIGLGLGLGGGSGSGAGAGSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYA
        MASIKAI+VLCLVLCMSVIES+A RVARKDLGLDLGGLG GLG+GLGLGLGGGSGSGAGAGSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYA
Subjt:  MASIKAISVLCLVLCMSVIESQARRVARKDLGLDLGGLGAGLGIGLGLGLGGGSGSGAGAGSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYA

Query:  GSRAGSGSGRGNG--GGEGHGYGEGRGYGEGGNN
        GSRAGSGSG  NG  GGEGHGYGEG GYGEGGNN
Subjt:  GSRAGSGSGRGNG--GGEGHGYGEGRGYGEGGNN

A0A1S3B9P9 glycine-rich protein DOT1-like1.8e-3788.97Show/hide
Query:  MASIKAISVLCLVLCMSVIESQARRVARKDLGLDLGGLGAGLGIGLGLGLGGGSGSGAGA--GSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGS
        MASIKAI VLCLVLCMSVIES+A RVARK+LGLDLGGLG GLG+GLGLG+GGGSGSGAGA  GSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGS
Subjt:  MASIKAISVLCLVLCMSVIESQARRVARKDLGLDLGGLGAGLGIGLGLGLGGGSGSGAGA--GSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGS

Query:  YAGSRAGSGSGRGNG--GGEGHGYGEGRGYGEGGNN
        YAGSRAGSGS R NG  GGE HGYGEG GYGEGGNN
Subjt:  YAGSRAGSGSGRGNG--GGEGHGYGEGRGYGEGGNN

A0A5A7SV53 Glycine-rich protein DOT1-like1.8e-3788.97Show/hide
Query:  MASIKAISVLCLVLCMSVIESQARRVARKDLGLDLGGLGAGLGIGLGLGLGGGSGSGAGA--GSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGS
        MASIKAI VLCLVLCMSVIES+A RVARK+LGLDLGGLG GLG+GLGLG+GGGSGSGAGA  GSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGS
Subjt:  MASIKAISVLCLVLCMSVIESQARRVARKDLGLDLGGLGAGLGIGLGLGLGGGSGSGAGA--GSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGS

Query:  YAGSRAGSGSGRGNG--GGEGHGYGEGRGYGEGGNN
        YAGSRAGSGS R NG  GGE HGYGEG GYGEGGNN
Subjt:  YAGSRAGSGSGRGNG--GGEGHGYGEGRGYGEGGNN

A0A6J1C269 glycine-rich cell wall structural protein 2-like8.1e-3075Show/hide
Query:  MASIKAISVLCLVLCMSVIESQARRVARKDLGLDLGGLGAGLGIGLGLGLGGGSGSGAGAGSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYA
        MASI+AI+ +C V+C   IESQA RVARKDLGLDLGGLG GLG G+GLG+GGGSGSGAGAGSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGS A
Subjt:  MASIKAISVLCLVLCMSVIESQARRVARKDLGLDLGGLGAGLGIGLGLGLGGGSGSGAGAGSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYA

Query:  GSRAGS-----------------GSGRGNGG--GEGHGYGEGRGY-GEGGNN
        GS +GS                 GSGRGNG   GEGHGYGEGRGY GEGGNN
Subjt:  GSRAGS-----------------GSGRGNGG--GEGHGYGEGRGY-GEGGNN

A0A6J1E720 glycine-rich protein DOT1-like7.3e-3180.58Show/hide
Query:  MASIKAISVLCLVLCMSVIESQARRVARKDLGLDLGGLGAGLGIGLGLGLGGGSGSGAGAGSGSGSGSGSYSS--SSSHSSSSSYGGSGAGSEAGSYAGS
        M SI+AI+VLC V+CMS IESQ  RVARKDLGLDLGGLG GLG+GLGLGLGGGSGSG+G+GSGSGSGSGS S   SSS SSSSSYGGSGAGSEAGSYAGS
Subjt:  MASIKAISVLCLVLCMSVIESQARRVARKDLGLDLGGLGAGLGIGLGLGLGGGSGSGAGAGSGSGSGSGSYSS--SSSHSSSSSYGGSGAGSEAGSYAGS

Query:  YAGSRAGSGSGR-----GNGGGEGHGYGEGRGYGEGGNN
        YAGSR GS SGR     G+G GEG GYGEGRGYGEGGNN
Subjt:  YAGSRAGSGSGR-----GNGGGEGHGYGEGRGYGEGGNN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G30450.1 glycine-rich protein4.1e-1867.89Show/hide
Query:  MASIKAISVLCLVLCMSVIESQARRVARKDLGLDLGGLGAGLGIGLGLGLGGGSGSGAGAGSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYA
        MA  + + +L LV+  S++     R+ARKDLG+DLGG+G GLG+GLG+GLGGGSGSGAGAGSGSGSGS S SSSSS SSSSS   SG+G  AGS AGS+A
Subjt:  MASIKAISVLCLVLCMSVIESQARRVARKDLGLDLGGLGAGLGIGLGLGLGGGSGSGAGAGSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYA

Query:  GSRAGSGSG
        GSRAGSGSG
Subjt:  GSRAGSGSG

AT4G30460.1 glycine-rich protein9.8e-2067.94Show/hide
Query:  AISVLCLVLCMSVIESQARRVARKDLGLDLGGLGAGLGIGLGLGLGGGSGSGAGAGSGSGSGSGSYSSSSSHSSSSSYGGSG--AGSEAGSYAGSYAGS-
        ++ ++ L+L  SV+ S++ RVARKDLGLDLGG+GAG+GIG+G+G GGGSGSGAGAGSGSG G  S SSSSS SSSSS GG G  AGSEAGSYAGS+AGS 
Subjt:  AISVLCLVLCMSVIESQARRVARKDLGLDLGGLGAGLGIGLGLGLGGGSGSGAGAGSGSGSGSGSYSSSSSHSSSSSYGGSG--AGSEAGSYAGSYAGS-

Query:  ---RAGSGSGRGNGGGEGHGYGEGRGYGEGG
           R+GSG GRG+GGG GHG G G G G GG
Subjt:  ---RAGSGSGRGNGGGEGHGYGEGRGYGEGG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCTCCATCAAAGCTATTTCTGTTCTTTGTTTAGTACTCTGTATGTCTGTGATTGAATCACAAGCAAGGCGTGTGGCCAGGAAGGACCTCGGCCTTGATCTTGGTGG
CTTGGGAGCTGGCCTTGGCATTGGCTTGGGCTTGGGCTTAGGCGGTGGAAGTGGGTCGGGTGCTGGAGCCGGGTCTGGATCCGGATCCGGTTCTGGTTCCTATTCTTCTT
CGTCGTCACACTCATCTAGCTCTAGCTATGGAGGCTCCGGCGCAGGCTCTGAAGCTGGTTCCTACGCTGGGTCTTACGCAGGGTCACGTGCTGGCTCAGGTTCCGGCAGA
GGAAACGGCGGCGGAGAGGGTCATGGCTACGGCGAGGGACGTGGTTACGGTGAAGGTGGCAACAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCCTCCATCAAAGCTATTTCTGTTCTTTGTTTAGTACTCTGTATGTCTGTGATTGAATCACAAGCAAGGCGTGTGGCCAGGAAGGACCTCGGCCTTGATCTTGGTGG
CTTGGGAGCTGGCCTTGGCATTGGCTTGGGCTTGGGCTTAGGCGGTGGAAGTGGGTCGGGTGCTGGAGCCGGGTCTGGATCCGGATCCGGTTCTGGTTCCTATTCTTCTT
CGTCGTCACACTCATCTAGCTCTAGCTATGGAGGCTCCGGCGCAGGCTCTGAAGCTGGTTCCTACGCTGGGTCTTACGCAGGGTCACGTGCTGGCTCAGGTTCCGGCAGA
GGAAACGGCGGCGGAGAGGGTCATGGCTACGGCGAGGGACGTGGTTACGGTGAAGGTGGCAACAATTAA
Protein sequenceShow/hide protein sequence
MASIKAISVLCLVLCMSVIESQARRVARKDLGLDLGGLGAGLGIGLGLGLGGGSGSGAGAGSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGSGSGR
GNGGGEGHGYGEGRGYGEGGNN