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Lsi06G010980 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi06G010980
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionglycine-rich cell wall structural protein 2-like
Genome locationchr06:21246521..21246916
RNA-Seq ExpressionLsi06G010980
SyntenyLsi06G010980
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008443812.1 PREDICTED: putative glycine-rich cell wall structural protein 1 [Cucumis melo]2.2e-3482.86Show/hide
Query:  MASIRAVAIVAFLLGLSVIVSESRVARMDLGLDLGRVGLGVGTGVGLGLGGSGSGSGSGSGSGSSSASSSQSSSSSSGSDAGSEAGSYAGSYAGSRSGSG
        MASIR VA+V FLLG+SVIVSESRVAR DLGLDLG +GLGVGTGVGLGL   GSGSG GSG GSSSASSS SSSSSSGSDAGSEAGSYAGSYAGSR+GSG
Subjt:  MASIRAVAIVAFLLGLSVIVSESRVARMDLGLDLGRVGLGVGTGVGLGLGGSGSGSGSGSGSGSSSASSSQSSSSSSGSDAGSEAGSYAGSYAGSRSGSG

Query:  SGRNRNGGSGS---------GYGEGHGYGEGHGYGSGGEN
        SGRNRNGGSGS         GYGEGHGYGEGHGYG+GGEN
Subjt:  SGRNRNGGSGS---------GYGEGHGYGEGHGYGSGGEN

XP_022135238.1 putative glycine-rich cell wall structural protein 1 [Momordica charantia]8.5e-2671.53Show/hide
Query:  MASIRAVAIVAFLLGLS-VIVSESRVARMDLGLDLGRVGLGVGTGVGLGLG---GSGSGSGSGSGSGSSSASSSQSSSSSSGSDAGSEAGSYAGSYAGSR
        MA+IR  A+VAF+LGLS  IVSE+RVAR DLG+DLG VG+G+G G+GLG G   GSG+G+GSGSGSGSSS+SSS SSSSSSGS AGSEAGSYAGSYAGSR
Subjt:  MASIRAVAIVAFLLGLS-VIVSESRVARMDLGLDLGRVGLGVGTGVGLGLG---GSGSGSGSGSGSGSSSASSSQSSSSSSGSDAGSEAGSYAGSYAGSR

Query:  SGSGSGRNRNGGSGS------------GYGEGHGYGEGHGYGSG
        +GSGSG NR  GSGS            GYGEGHGYGEGHGYG G
Subjt:  SGSGSGRNRNGGSGS------------GYGEGHGYGEGHGYGSG

XP_022921884.1 glycine-rich cell wall structural protein 2-like [Cucurbita moschata]2.2e-2975.5Show/hide
Query:  MASIRAVAIVAFLLGLSVIVSESRVARMDLGLDLGRVGLGVGTGVGLGLG----GSGSGSGSGSGSGSSSASSSQSSSSSSGSDAGSEAGSYAGSYAGSR
        MASIRAV+I+A LL LSVIVSESRVARMDLGLDLG VG+G+GTGVGLGLG    GSGSGSGSGSGSGSSSASSS SSSSSSGSDAGSEAGSYAGSYA   
Subjt:  MASIRAVAIVAFLLGLSVIVSESRVARMDLGLDLGRVGLGVGTGVGLGLG----GSGSGSGSGSGSGSSSASSSQSSSSSSGSDAGSEAGSYAGSYAGSR

Query:  SGSGSGRNRNGGSGSGYGE----------------GHGYGEGHGYGSGGEN
         GSGSGRNRNGGSGSG G                 G GYGEGHGYG+ GEN
Subjt:  SGSGSGRNRNGGSGSGYGE----------------GHGYGEGHGYGSGGEN

XP_023515818.1 putative glycine-rich cell wall structural protein 1 isoform X2 [Cucurbita pepo subsp. pepo]9.1e-2867.47Show/hide
Query:  MASIRAVAIVAFLLGLSVIVSESRVARMDLGLDLGRVGLGVGTGVGLGLGGSGSGSGSGSGSGSSSASSSQSSSSSSGSDAGSEAGSYAGSYAGSRSGSG
        MASIRAV+I+A LL LSVIVSESR+ARMDLGLDLG VG+G+GTGVGLGLG    GSGSGSGSGSSSASSS SSSSSSGSDAGSEAGSYAGSYAGSR+GSG
Subjt:  MASIRAVAIVAFLLGLSVIVSESRVARMDLGLDLGRVGLGVGTGVGLGLGGSGSGSGSGSGSGSSSASSSQSSSSSSGSDAGSEAGSYAGSYAGSRSGSG

Query:  --------------------SGRNRNGGSGS------------------GYGEGHGYGEGHGYGSG
                            SGRNRNGGSGS                  GYGEGHGYGEG GYG G
Subjt:  --------------------SGRNRNGGSGS------------------GYGEGHGYGEGHGYGSG

XP_038879815.1 putative per-hexamer repeat protein 5 [Benincasa hispida]5.3e-3680.79Show/hide
Query:  MASIRAVAIVAFLLGLSVIVSESRVARMDLGLDLGRVGLGVGTGVGLGLG----GSGSGSGSGSGSGSSSASSSQSSSSSSGSDAGSEAGSYAGSYAGSR
        MASIRAV I+AFLLG+SVIVSE RVARM+LGLDLG VGLGVGTGVGLGLG    GSGSGSGSGSGSGSSSASSS SSSSSSGSDAGSEAGSYAGSYAGSR
Subjt:  MASIRAVAIVAFLLGLSVIVSESRVARMDLGLDLGRVGLGVGTGVGLGLG----GSGSGSGSGSGSGSSSASSSQSSSSSSGSDAGSEAGSYAGSYAGSR

Query:  SGSGSGRNRNGGSGS----------------GYGEGHGYGEGHGYGSGGEN
        +GSGSGRNRNGGSGS                GYGEGHGYGEGHGYG+GGEN
Subjt:  SGSGSGRNRNGGSGS----------------GYGEGHGYGEGHGYGSGGEN

TrEMBL top hitse value%identityAlignment
A0A0A0LTK9 Uncharacterized protein4.6e-2567.76Show/hide
Query:  MASIRAVAI-VAFLLGLSVIVSESRVARMDLGLDLGRVGLGVGTGVGLGLG----GSGSGSGSGSGSGSSSASSSQSSSSSSGSDAGSEAGSYAGSYAGS
        MASI+++AI V  LL  S I+SE RVAR DLG+DLG VG+G+GTG+GLG+G    GSGSGSGSGSGSGSSS+SSS SSSSSSGS AGSEAGSYAGSYAGS
Subjt:  MASIRAVAI-VAFLLGLSVIVSESRVARMDLGLDLGRVGLGVGTGVGLGLG----GSGSGSGSGSGSGSSSASSSQSSSSSSGSDAGSEAGSYAGSYAGS

Query:  RSGSGSGRNRNGGS-------------------GSGYGEGHGYGEGHGYGSG
        R+GSGSG NRNGGS                   G GYGEGHGYGEG GYG G
Subjt:  RSGSGSGRNRNGGS-------------------GSGYGEGHGYGEGHGYGSG

A0A0A0LZ57 Uncharacterized protein2.1e-2573.13Show/hide
Query:  MASIRAVAIVAFLLGLSVIVSESRVARMDLGLDLGRVGLGVGTGVGLGLGGSGSGSGSGSGSGSSSASSSQSSSSSSGSDAGSEAGSYAGSYAGSRSGSG
        MASIR+VA+V FLLG+SVIVSESRVAR DLGLDLG VGLGVGTG+GLGLGGSGSGSGSGSGSGSSSAS S S                  SYAGS  GSG
Subjt:  MASIRAVAIVAFLLGLSVIVSESRVARMDLGLDLGRVGLGVGTGVGLGLGGSGSGSGSGSGSGSSSASSSQSSSSSSGSDAGSEAGSYAGSYAGSRSGSG

Query:  SGRNRNGGSGSGYGEGH---GYGEGHGYGSGGEN
        SGRNRNGGSGSG G G+   GYGEGHGYG+GGEN
Subjt:  SGRNRNGGSGSGYGEGH---GYGEGHGYGSGGEN

A0A1S3B8Y8 putative glycine-rich cell wall structural protein 11.1e-3482.86Show/hide
Query:  MASIRAVAIVAFLLGLSVIVSESRVARMDLGLDLGRVGLGVGTGVGLGLGGSGSGSGSGSGSGSSSASSSQSSSSSSGSDAGSEAGSYAGSYAGSRSGSG
        MASIR VA+V FLLG+SVIVSESRVAR DLGLDLG +GLGVGTGVGLGL   GSGSG GSG GSSSASSS SSSSSSGSDAGSEAGSYAGSYAGSR+GSG
Subjt:  MASIRAVAIVAFLLGLSVIVSESRVARMDLGLDLGRVGLGVGTGVGLGLGGSGSGSGSGSGSGSSSASSSQSSSSSSGSDAGSEAGSYAGSYAGSRSGSG

Query:  SGRNRNGGSGS---------GYGEGHGYGEGHGYGSGGEN
        SGRNRNGGSGS         GYGEGHGYGEGHGYG+GGEN
Subjt:  SGRNRNGGSGS---------GYGEGHGYGEGHGYGSGGEN

A0A6J1C497 putative glycine-rich cell wall structural protein 14.1e-2671.53Show/hide
Query:  MASIRAVAIVAFLLGLS-VIVSESRVARMDLGLDLGRVGLGVGTGVGLGLG---GSGSGSGSGSGSGSSSASSSQSSSSSSGSDAGSEAGSYAGSYAGSR
        MA+IR  A+VAF+LGLS  IVSE+RVAR DLG+DLG VG+G+G G+GLG G   GSG+G+GSGSGSGSSS+SSS SSSSSSGS AGSEAGSYAGSYAGSR
Subjt:  MASIRAVAIVAFLLGLS-VIVSESRVARMDLGLDLGRVGLGVGTGVGLGLG---GSGSGSGSGSGSGSSSASSSQSSSSSSGSDAGSEAGSYAGSYAGSR

Query:  SGSGSGRNRNGGSGS------------GYGEGHGYGEGHGYGSG
        +GSGSG NR  GSGS            GYGEGHGYGEGHGYG G
Subjt:  SGSGSGRNRNGGSGS------------GYGEGHGYGEGHGYGSG

A0A6J1E1T0 glycine-rich cell wall structural protein 2-like1.1e-2975.5Show/hide
Query:  MASIRAVAIVAFLLGLSVIVSESRVARMDLGLDLGRVGLGVGTGVGLGLG----GSGSGSGSGSGSGSSSASSSQSSSSSSGSDAGSEAGSYAGSYAGSR
        MASIRAV+I+A LL LSVIVSESRVARMDLGLDLG VG+G+GTGVGLGLG    GSGSGSGSGSGSGSSSASSS SSSSSSGSDAGSEAGSYAGSYA   
Subjt:  MASIRAVAIVAFLLGLSVIVSESRVARMDLGLDLGRVGLGVGTGVGLGLG----GSGSGSGSGSGSGSSSASSSQSSSSSSGSDAGSEAGSYAGSYAGSR

Query:  SGSGSGRNRNGGSGSGYGE----------------GHGYGEGHGYGSGGEN
         GSGSGRNRNGGSGSG G                 G GYGEGHGYG+ GEN
Subjt:  SGSGSGRNRNGGSGSGYGE----------------GHGYGEGHGYGSGGEN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G30450.1 glycine-rich protein9.4e-1565.66Show/hide
Query:  FLLGLSVI-----VSESRVARMDLGLDLGRVGLGVGTGVGLGLG---GSGSGSGSGSGSGSSSASSSQSSSSSSGSDAGSEAGSYAGSYAGSRSGSGSG
        FLLGL VI     ++ESR+AR DLG+DLG +G+G+G G+G+GLG   GSG+G+GSGSGSGS S+SSS SSSSSS S +G  AGS AGS+AGSR+GSGSG
Subjt:  FLLGLSVI-----VSESRVARMDLGLDLGRVGLGVGTGVGLGLG---GSGSGSGSGSGSGSSSASSSQSSSSSSGSDAGSEAGSYAGSYAGSRSGSGSG

AT4G30460.1 glycine-rich protein4.1e-1862.22Show/hide
Query:  AVAIVAFLLGLSVIVSESRVARMDLGLDLGRVGLGVGTGVGLGLGGSGSGSGSGSGSG----SSSASSSQSSSSSS---GSDAGSEAGSYAGSYAGSRSG
        ++ ++  +L  SV+VSESRVAR DLGLDLG +G G+G G+G+G GGSGSG+G+GSGSG    SSS+SSS SSSSSS   G DAGSEAGSYAGS+AGS SG
Subjt:  AVAIVAFLLGLSVIVSESRVARMDLGLDLGRVGLGVGTGVGLGLGGSGSGSGSGSGSG----SSSASSSQSSSSSS---GSDAGSEAGSYAGSYAGSRSG

Query:  --SGSGRNRNGGSGSGYGEGHGYGEGHGYGSGGEN
          SGSGR R  G G G+G G G G G G G G  N
Subjt:  --SGSGRNRNGGSGSGYGEGHGYGEGHGYGSGGEN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCATCAGGGCTGTTGCCATTGTCGCCTTCCTACTTGGCCTGTCCGTCATTGTATCAGAAAGCCGCGTGGCCAGGATGGACTTGGGCCTCGACCTTGGCAGAGT
GGGCCTCGGTGTTGGCACGGGAGTGGGCTTGGGCTTAGGTGGAAGTGGCTCGGGTTCCGGCTCGGGTTCTGGATCTGGGTCTAGCTCTGCTTCCTCATCACAGTCCTCAA
GCTCCAGCTCTGGCTCCGACGCTGGGTCGGAAGCCGGTTCGTATGCTGGCTCTTACGCCGGGTCTCGGTCCGGGTCTGGTTCGGGTAGAAACAGAAACGGTGGATCCGGT
TCAGGATATGGAGAGGGGCATGGGTACGGCGAGGGGCATGGTTATGGCAGTGGTGGCGAAAACTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCCATCAGGGCTGTTGCCATTGTCGCCTTCCTACTTGGCCTGTCCGTCATTGTATCAGAAAGCCGCGTGGCCAGGATGGACTTGGGCCTCGACCTTGGCAGAGT
GGGCCTCGGTGTTGGCACGGGAGTGGGCTTGGGCTTAGGTGGAAGTGGCTCGGGTTCCGGCTCGGGTTCTGGATCTGGGTCTAGCTCTGCTTCCTCATCACAGTCCTCAA
GCTCCAGCTCTGGCTCCGACGCTGGGTCGGAAGCCGGTTCGTATGCTGGCTCTTACGCCGGGTCTCGGTCCGGGTCTGGTTCGGGTAGAAACAGAAACGGTGGATCCGGT
TCAGGATATGGAGAGGGGCATGGGTACGGCGAGGGGCATGGTTATGGCAGTGGTGGCGAAAACTGA
Protein sequenceShow/hide protein sequence
MASIRAVAIVAFLLGLSVIVSESRVARMDLGLDLGRVGLGVGTGVGLGLGGSGSGSGSGSGSGSSSASSSQSSSSSSGSDAGSEAGSYAGSYAGSRSGSGSGRNRNGGSG
SGYGEGHGYGEGHGYGSGGEN