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Lsi06G011230 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi06G011230
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionF-box protein PP2-B10-like
Genome locationchr06:21498358..21501330
RNA-Seq ExpressionLsi06G011230
SyntenyLsi06G011230
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR001810 - F-box domain
IPR036047 - F-box-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022134921.1 F-box protein PP2-B10-like isoform X1 [Momordica charantia]5.0e-2268.97Show/hide
Query:  MEEETWMQREDGKIAHLSSLPEGVIAYILSLTSPFDVCRSSAVSRFFNATAQSDIAWDRFLPTDWNVLISPRKSVEQNVDPISSSKK
        MEEET    E  +IA  SSLPEGVIA ILSLT P D CRSS VSR F+A AQSDI WDRFLPTDW  LI  RK  + N+DPISSSKK
Subjt:  MEEETWMQREDGKIAHLSSLPEGVIAYILSLTSPFDVCRSSAVSRFFNATAQSDIAWDRFLPTDWNVLISPRKSVEQNVDPISSSKK

XP_022134922.1 F-box protein PP2-B10-like isoform X2 [Momordica charantia]5.0e-2268.97Show/hide
Query:  MEEETWMQREDGKIAHLSSLPEGVIAYILSLTSPFDVCRSSAVSRFFNATAQSDIAWDRFLPTDWNVLISPRKSVEQNVDPISSSKK
        MEEET    E  +IA  SSLPEGVIA ILSLT P D CRSS VSR F+A AQSDI WDRFLPTDW  LI  RK  + N+DPISSSKK
Subjt:  MEEETWMQREDGKIAHLSSLPEGVIAYILSLTSPFDVCRSSAVSRFFNATAQSDIAWDRFLPTDWNVLISPRKSVEQNVDPISSSKK

XP_023001976.1 F-box protein PP2-B10-like [Cucurbita maxima]6.1e-2063.64Show/hide
Query:  MMEEETWMQREDGKIAHLSSLPEGVIAYILSLTSPFDVCRSSAVSRFFNATAQSDIAWDRFLPTDWNVLISPRKSVEQNVDPISSSKK
        M E+ET    EDG+IA  SSLPEG IA ILSLT+P D CRSSAVSR F+A AQSDI W+RFLPT+W  LIS RK  + N DP + S K
Subjt:  MMEEETWMQREDGKIAHLSSLPEGVIAYILSLTSPFDVCRSSAVSRFFNATAQSDIAWDRFLPTDWNVLISPRKSVEQNVDPISSSKK

XP_038878468.1 F-box protein PP2-B10-like [Benincasa hispida]9.5e-2164.77Show/hide
Query:  MMEEETWMQREDGKIAHLSSLPEGVIAYILSLTSPFDVCRSSAVSRFFNATAQSDIAWDRFLPTDWNVLISPRKSVEQNVDPISSSKK
        MMEEE     E  +I+  SSLPEGV+A ILSLT+P D CRSSAVSR F+A AQSDI WD+ LPTDW +LIS RK    N DPISS KK
Subjt:  MMEEETWMQREDGKIAHLSSLPEGVIAYILSLTSPFDVCRSSAVSRFFNATAQSDIAWDRFLPTDWNVLISPRKSVEQNVDPISSSKK

XP_038878692.1 F-box protein PP2-B10-like [Benincasa hispida]8.0e-2064.37Show/hide
Query:  MEEETWMQREDGKIAHLSSLPEGVIAYILSLTSPFDVCRSSAVSRFFNATAQSDIAWDRFLPTDWNVLISPRKSVEQNVDPISSSKK
        MEEE   +  + +I+  SSLPEGV+A ILSLT+P DVCRSSAV R F A +QSDI WDRFLPTDW +LIS RK    N DPISS KK
Subjt:  MEEETWMQREDGKIAHLSSLPEGVIAYILSLTSPFDVCRSSAVSRFFNATAQSDIAWDRFLPTDWNVLISPRKSVEQNVDPISSSKK

TrEMBL top hitse value%identityAlignment
A0A0A0LUI2 F-box domain-containing protein9.6e-1961.8Show/hide
Query:  MEEETWMQR--EDGKIAHLSSLPEGVIAYILSLTSPFDVCRSSAVSRFFNATAQSDIAWDRFLPTDWNVLISPRKSVEQNVDPISSSKK
        ME+E+ M+   ED +I  LS LPEGVIA +LS T+P D C ++AVSR FNA AQSD  WDRFLP DW+VLIS RKS     DP+SSSKK
Subjt:  MEEETWMQR--EDGKIAHLSSLPEGVIAYILSLTSPFDVCRSSAVSRFFNATAQSDIAWDRFLPTDWNVLISPRKSVEQNVDPISSSKK

A0A6J1BZ47 F-box protein PP2-B10-like isoform X12.4e-2268.97Show/hide
Query:  MEEETWMQREDGKIAHLSSLPEGVIAYILSLTSPFDVCRSSAVSRFFNATAQSDIAWDRFLPTDWNVLISPRKSVEQNVDPISSSKK
        MEEET    E  +IA  SSLPEGVIA ILSLT P D CRSS VSR F+A AQSDI WDRFLPTDW  LI  RK  + N+DPISSSKK
Subjt:  MEEETWMQREDGKIAHLSSLPEGVIAYILSLTSPFDVCRSSAVSRFFNATAQSDIAWDRFLPTDWNVLISPRKSVEQNVDPISSSKK

A0A6J1C117 F-box protein PP2-B10-like isoform X22.4e-2268.97Show/hide
Query:  MEEETWMQREDGKIAHLSSLPEGVIAYILSLTSPFDVCRSSAVSRFFNATAQSDIAWDRFLPTDWNVLISPRKSVEQNVDPISSSKK
        MEEET    E  +IA  SSLPEGVIA ILSLT P D CRSS VSR F+A AQSDI WDRFLPTDW  LI  RK  + N+DPISSSKK
Subjt:  MEEETWMQREDGKIAHLSSLPEGVIAYILSLTSPFDVCRSSAVSRFFNATAQSDIAWDRFLPTDWNVLISPRKSVEQNVDPISSSKK

A0A6J1ES31 F-box protein PP2-B10-like6.6e-2063.64Show/hide
Query:  MMEEETWMQREDGKIAHLSSLPEGVIAYILSLTSPFDVCRSSAVSRFFNATAQSDIAWDRFLPTDWNVLISPRKSVEQNVDPISSSKK
        M ++ET    EDG+IA  SSLPEG IA ILSLT+P D CRSSAVSR F+A A SDI W+RFLPTDW  LIS RK  + N DPI+ S K
Subjt:  MMEEETWMQREDGKIAHLSSLPEGVIAYILSLTSPFDVCRSSAVSRFFNATAQSDIAWDRFLPTDWNVLISPRKSVEQNVDPISSSKK

A0A6J1KK45 F-box protein PP2-B10-like3.0e-2063.64Show/hide
Query:  MMEEETWMQREDGKIAHLSSLPEGVIAYILSLTSPFDVCRSSAVSRFFNATAQSDIAWDRFLPTDWNVLISPRKSVEQNVDPISSSKK
        M E+ET    EDG+IA  SSLPEG IA ILSLT+P D CRSSAVSR F+A AQSDI W+RFLPT+W  LIS RK  + N DP + S K
Subjt:  MMEEETWMQREDGKIAHLSSLPEGVIAYILSLTSPFDVCRSSAVSRFFNATAQSDIAWDRFLPTDWNVLISPRKSVEQNVDPISSSKK

SwissProt top hitse value%identityAlignment
Q949S5 F-box protein PP2-B112.5e-0857.14Show/hide
Query:  LSSLPEGVIAYILSLTSPFDVCRSSAVSRFFNATAQSDIAWDRFLPTDW
        +++LPE  IA ILSLT+P DVCR SAVS  F + A SD  W+ FLP D+
Subjt:  LSSLPEGVIAYILSLTSPFDVCRSSAVSRFFNATAQSDIAWDRFLPTDW

Q9FLU7 Putative F-box protein PP2-B122.5e-0852Show/hide
Query:  LPEGVIAYILSLTSPFDVCRSSAVSRFFNATAQSDIAWDRFLPTDWNVLI
        LPE  IA ++S TSPFD CR SAVS+   + A S+  W+RFLP+D+ + I
Subjt:  LPEGVIAYILSLTSPFDVCRSSAVSRFFNATAQSDIAWDRFLPTDWNVLI

Q9FV02 F-box protein SKIP34.1e-1152.63Show/hide
Query:  LSSLPEGVIAYILSLTSPFDVCRSSAVSRFFNATAQSDIAWDRFLPTDWNVLISPRK
        L SLPEG I+ I+S TSP D C ++AVS+ F +  +SDI W++FLPTD+  LI+P +
Subjt:  LSSLPEGVIAYILSLTSPFDVCRSSAVSRFFNATAQSDIAWDRFLPTDWNVLISPRK

Q9ZVQ6 F-box protein PP2-B103.0e-0940.91Show/hide
Query:  QREDGKIAHLSSLPEGVIAYILSLTSPFDVCRSSAVSRFFNATAQSDIAWDRFLPTDWNVLISPRK
        +R   + +   S PE  I+YI+S T+P D C ++ VS+ F +T +SDI W++FLP D+  LI P +
Subjt:  QREDGKIAHLSSLPEGVIAYILSLTSPFDVCRSSAVSRFFNATAQSDIAWDRFLPTDWNVLISPRK

Q9ZVR5 Putative F-box protein PP2-B27.3e-0843.64Show/hide
Query:  SLPEGVIAYILSLTSPFDVCRSSAVSRFFNATAQSDIAWDRFLPTDWNVLISPRK
        +LPE  I+ I+S TSP D C +++VS+ F +   SD  WD+FLP+D++ L+ P +
Subjt:  SLPEGVIAYILSLTSPFDVCRSSAVSRFFNATAQSDIAWDRFLPTDWNVLISPRK

Arabidopsis top hitse value%identityAlignment
AT1G80110.1 phloem protein 2-B111.8e-0957.14Show/hide
Query:  LSSLPEGVIAYILSLTSPFDVCRSSAVSRFFNATAQSDIAWDRFLPTDW
        +++LPE  IA ILSLT+P DVCR SAVS  F + A SD  W+ FLP D+
Subjt:  LSSLPEGVIAYILSLTSPFDVCRSSAVSRFFNATAQSDIAWDRFLPTDW

AT2G02250.1 phloem protein 2-B25.2e-0943.64Show/hide
Query:  SLPEGVIAYILSLTSPFDVCRSSAVSRFFNATAQSDIAWDRFLPTDWNVLISPRK
        +LPE  I+ I+S TSP D C +++VS+ F +   SD  WD+FLP+D++ L+ P +
Subjt:  SLPEGVIAYILSLTSPFDVCRSSAVSRFFNATAQSDIAWDRFLPTDWNVLISPRK

AT2G02340.1 phloem protein 2-B81.5e-0839.34Show/hide
Query:  IAHLSSLPEGVIAYILSLTSPFDVCRSSAVSRFFNATAQSDIAWDRFLPTDWNVLISPRKS
        +A L  LPE  ++ I+S TSP D C  ++VS+ F +  +SDI W++F+P ++  LIS  ++
Subjt:  IAHLSSLPEGVIAYILSLTSPFDVCRSSAVSRFFNATAQSDIAWDRFLPTDWNVLISPRKS

AT2G02360.1 phloem protein 2-B102.1e-1040.91Show/hide
Query:  QREDGKIAHLSSLPEGVIAYILSLTSPFDVCRSSAVSRFFNATAQSDIAWDRFLPTDWNVLISPRK
        +R   + +   S PE  I+YI+S T+P D C ++ VS+ F +T +SDI W++FLP D+  LI P +
Subjt:  QREDGKIAHLSSLPEGVIAYILSLTSPFDVCRSSAVSRFFNATAQSDIAWDRFLPTDWNVLISPRK

AT5G24560.1 phloem protein 2-B121.8e-0952Show/hide
Query:  LPEGVIAYILSLTSPFDVCRSSAVSRFFNATAQSDIAWDRFLPTDWNVLI
        LPE  IA ++S TSPFD CR SAVS+   + A S+  W+RFLP+D+ + I
Subjt:  LPEGVIAYILSLTSPFDVCRSSAVSRFFNATAQSDIAWDRFLPTDWNVLI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGGAAGAAGAAACGTGGATGCAAAGGGAGGATGGAAAAATTGCCCATTTATCTTCTCTGCCTGAAGGAGTAATAGCTTACATCTTGTCGCTCACGAGTCCATTCGA
TGTCTGCAGATCGTCGGCAGTTTCCCGATTTTTCAATGCGACAGCGCAGTCGGATATCGCTTGGGATAGATTCCTGCCTACGGATTGGAACGTGTTGATTTCTCCGAGGA
AATCAGTTGAACAGAATGTTGATCCAATTTCGAGCTCGAAGAAGTAG
mRNA sequenceShow/hide mRNA sequence
TTCTCATCTCGCTTCTTCCTCTCATTTCTTTCTTGTCAATTTTGTAATTTTTTCCTTTGAGTTTTATTCCTTCATTTGAATTCTCACTCTCGCTTCTTCCTCTTATTTAT
TTCTTGGTCTCTTCTTTCTCTCGTTCTGATTCACTTCTCAACTTACCTCTTTGATTCGAAAAAATAAGAGGGCCTGAAGGAAATCTCGCCGGAAAAATCAGAAAAAAAGA
GGGTGACATAAATAGAAATCTCTAGGAAAGAAAAAAAAACGAAAATCGCCCGAAAAACAGAGGAAGACATAAACGAAAAAATCGCTGGAATTAAAAAAAGAAAAAAGAAG
AAAAGAAGAAAAGCAGAAAAAATGAAAAAGAAAAAAGAGAAGGAAGAAAGATTACAATGATGGAAGAAGAAACGTGGATGCAAAGGGAGGATGGAAAAATTGCCCATTTA
TCTTCTCTGCCTGAAGGAGTAATAGCTTACATCTTGTCGCTCACGAGTCCATTCGATGTCTGCAGATCGTCGGCAGTTTCCCGATTTTTCAATGCGACAGCGCAGTCGGA
TATCGCTTGGGATAGATTCCTGCCTACGGATTGGAACGTGTTGATTTCTCCGAGGAAATCAGTTGAACAGAATGTTGATCCAATTTCGAGCTCGAAGAAGTAGATATTTT
TCTCCCTTTGCGACAATCCAGTCCTAATTGATGACGGCAATAAGAATGCATGTGAGTGAGAACAAAGCATGCTGAAAAGACCCATGATGGTTTGTGGGCATTCATGACAA
GAAAGGATGGCGTAGCCGGGTTGCAAGGGAATGCCGGGACCAAGTGCCGAATCCAGATTTCGAATTCTGGTCCGAATCCTGGGCCTGGGGCGTTACAAGTTCTGTAATTA
TCTTGGATTCCAACAAAAACTCTTGCAATTATTTTTAAAAAGAGCTTGTCATTAGAAAAATGGAGTGGTAAAAAATGCATAATGCTTGGAGCAAGGGACCTCTCAGTTGT
TTGGGGTGATACCCCTTTTTATTGGACCTGGGAACACCATCCTGATTCGAGATTTGCAGGGGTAGCTGTACTCCAAAATGTATGGTGGCTTGAAATACGTGGAAGAATAA
GTTGCAGAATGTTATCTCATAAAACAACTTATGCAATTTACTTTGTATTCAAGATGATGCGACATAGTTACTATGGGTTCGATATTGATCCTGCTGAGGCCGCAGTGGGA
ATTCTTGGAACTGAAAACCATCGGAAAAGTGTTTGTTTGGACCCTTATTTGAACAATCCTCGACCGGAGTACGATGATGAACCATTTATGATGTGGCCTCGGTCTGAAGA
CATGTCAGGATTCGAGCAGCCACAGGAGAGACATGATGGTTGGTTTGAAATTGAGTTGGGAGAGTTTGAAAGTAGTGATGGAGATGATGAAATTGAGATGAGTCTTATGG
AGGTGAAAGGCACTACTGATAAGATTGGTCTTGTTGTTGAGGGGATTGAGATTAGGCCTAAACTCATGTTGTA
Protein sequenceShow/hide protein sequence
MMEEETWMQREDGKIAHLSSLPEGVIAYILSLTSPFDVCRSSAVSRFFNATAQSDIAWDRFLPTDWNVLISPRKSVEQNVDPISSSKK