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Lsi06G011450 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi06G011450
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUBP1-associated proteins 1C-like isoform X3
Genome locationchr06:21697835..21698185
RNA-Seq ExpressionLsi06G011450
SyntenyLsi06G011450
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008443847.1 PREDICTED: uncharacterized protein LOC103487343 [Cucumis melo]4.5e-1275Show/hide
Query:  FRANDNKSPATAASSSVRSSDQPVQDDSLNAELLKQRIKEEIMIREIANRRILEAEIRRELILE
        FRA DNKSPATAAS    +SDQP+QDDSLN EL KQRIKEEI +REI  RR+LEAEIRREL++E
Subjt:  FRANDNKSPATAASSSVRSSDQPVQDDSLNAELLKQRIKEEIMIREIANRRILEAEIRRELILE

XP_022926958.1 uncharacterized protein LOC111433915 [Cucurbita moschata]2.7e-0973.02Show/hide
Query:  RANDNKSPATAASSSVRSSDQPVQDDSLNAELLKQRIKEEIMIREIANRRILEAEIRRELILE
        RA DNK P  AASSS  SSD P++DDS NAEL+KQRIKEEI  RE A+RR+LEAEIRRELI+E
Subjt:  RANDNKSPATAASSSVRSSDQPVQDDSLNAELLKQRIKEEIMIREIANRRILEAEIRRELILE

XP_022965220.1 uncharacterized protein LOC111465139 isoform X1 [Cucurbita maxima]7.4e-0766.67Show/hide
Query:  RANDNKSPATAASSSVRSSDQPVQDDSLNAELLKQRIKEEIMIREIANRRILEAEIRRELILE
        RA DN+ P  AASSS  SSD P++DDS NAEL+KQRIK +I  REIA+RR+LEAE R ELI+E
Subjt:  RANDNKSPATAASSSVRSSDQPVQDDSLNAELLKQRIKEEIMIREIANRRILEAEIRRELILE

XP_038880353.1 zinc finger protein 385B [Benincasa hispida]1.3e-1482.81Show/hide
Query:  FRANDNKSPATAASSSVRSSDQPVQDDSLNAELLKQRIKEEIMIREIANRRILEAEIRRELILE
        FRANDNKSPATA S+SVRS DQ +Q DSLNAELLKQR+K+EIMIREIA+RR+LEAEIRRELI+E
Subjt:  FRANDNKSPATAASSSVRSSDQPVQDDSLNAELLKQRIKEEIMIREIANRRILEAEIRRELILE

TrEMBL top hitse value%identityAlignment
A0A1S3B9S7 uncharacterized protein LOC1034873432.2e-1275Show/hide
Query:  FRANDNKSPATAASSSVRSSDQPVQDDSLNAELLKQRIKEEIMIREIANRRILEAEIRRELILE
        FRA DNKSPATAAS    +SDQP+QDDSLN EL KQRIKEEI +REI  RR+LEAEIRREL++E
Subjt:  FRANDNKSPATAASSSVRSSDQPVQDDSLNAELLKQRIKEEIMIREIANRRILEAEIRRELILE

A0A5D3B800 UBP1-associated proteins 1C-like isoform X32.2e-1275Show/hide
Query:  FRANDNKSPATAASSSVRSSDQPVQDDSLNAELLKQRIKEEIMIREIANRRILEAEIRRELILE
        FRA DNKSPATAAS    +SDQP+QDDSLN EL KQRIKEEI +REI  RR+LEAEIRREL++E
Subjt:  FRANDNKSPATAASSSVRSSDQPVQDDSLNAELLKQRIKEEIMIREIANRRILEAEIRRELILE

A0A6J1EJN4 uncharacterized protein LOC1114339151.3e-0973.02Show/hide
Query:  RANDNKSPATAASSSVRSSDQPVQDDSLNAELLKQRIKEEIMIREIANRRILEAEIRRELILE
        RA DNK P  AASSS  SSD P++DDS NAEL+KQRIKEEI  RE A+RR+LEAEIRRELI+E
Subjt:  RANDNKSPATAASSSVRSSDQPVQDDSLNAELLKQRIKEEIMIREIANRRILEAEIRRELILE

A0A6J1HN47 uncharacterized protein LOC111465139 isoform X13.6e-0766.67Show/hide
Query:  RANDNKSPATAASSSVRSSDQPVQDDSLNAELLKQRIKEEIMIREIANRRILEAEIRRELILE
        RA DN+ P  AASSS  SSD P++DDS NAEL+KQRIK +I  REIA+RR+LEAE R ELI+E
Subjt:  RANDNKSPATAASSSVRSSDQPVQDDSLNAELLKQRIKEEIMIREIANRRILEAEIRRELILE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTCCGAGCCAACGATAACAAATCGCCGGCCACCGCCGCTTCCAGCTCCGTACGCTCCTCCGATCAACCGGTTCAAGATGATTCTTTAAATGCCGAGCTCTTGAAACAGAG
GATAAAAGAAGAAATAATGATCAGAGAGATCGCTAACCGCAGAATTCTCGAAGCGGAGATCAGAAGAGAGCTAATTCTCGAA
mRNA sequenceShow/hide mRNA sequence
TTCCGAGCCAACGATAACAAATCGCCGGCCACCGCCGCTTCCAGCTCCGTACGCTCCTCCGATCAACCGGTTCAAGATGATTCTTTAAATGCCGAGCTCTTGAAACAGAG
GATAAAAGAAGAAATAATGATCAGAGAGATCGCTAACCGCAGAATTCTCGAAGCGGAGATCAGAAGAGAGCTAATTCTCGAA
Protein sequenceShow/hide protein sequence
FRANDNKSPATAASSSVRSSDQPVQDDSLNAELLKQRIKEEIMIREIANRRILEAEIRRELILE