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Lsi06G011460 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi06G011460
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUBP1-associated proteins 1C-like isoform X3
Genome locationchr06:21698198..21700724
RNA-Seq ExpressionLsi06G011460
SyntenyLsi06G011460
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR003604 - Matrin/U1-C-like, C2H2-type zinc finger
IPR036236 - Zinc finger C2H2 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008443847.1 PREDICTED: uncharacterized protein LOC103487343 [Cucumis melo]1.1e-1659.38Show/hide
Query:  DGKKHMAKEGRRGLQT---QEPSE-EEDQKEKLDDPQKSAEQKAAVE-NKRAKFWCKICEIGTHCMANMVTHNNGKKHKARLLKLSNDCKLEDHKE
        +GKKH AKEGRR +Q    +EP++ EED KEKLD P K+ ++  A+E NKR KF C+IC +G   MA MV+HNNG+KHKARLLKLS  CK ED K+
Subjt:  DGKKHMAKEGRRGLQT---QEPSE-EEDQKEKLDDPQKSAEQKAAVE-NKRAKFWCKICEIGTHCMANMVTHNNGKKHKARLLKLSNDCKLEDHKE
XP_038880353.1 zinc finger protein 385B [Benincasa hispida]2.9e-4452.4Show/hide
Query:  RRAEGRTEGLSFDDQFSVRLLDQIRMNH-IVNPSRGLQTVPVSSSLLLPVRPVPDPQNEEPKPFD-----------------------------------
        RR EGRTEGL FDDQFSVRLLDQIRMNH IV+P RGL TVP SSS  LPV PVP+PQNEEPKPFD                                   
Subjt:  RRAEGRTEGLSFDDQFSVRLLDQIRMNH-IVNPSRGLQTVPVSSSLLLPVRPVPDPQNEEPKPFD-----------------------------------

Query:  ------------------------------------GKKHMAKEGRRGLQTQEPSEEEDQKEKLDDPQKSAEQKAAVENK-RAKFWCKICEIGTHCMANM
                                            GKKHMAKEG R LQTQEPS  ED KEKLD+ +K A++K+A++NK   KFWCKICEIGT CMA M
Subjt:  ------------------------------------GKKHMAKEGRRGLQTQEPSEEEDQKEKLDDPQKSAEQKAAVENK-RAKFWCKICEIGTHCMANM

Query:  VTHNNGKKHKARLLKLSNDCKLEDHKEKP
        V+HNNGKKHKARLLKLS   KL+D K++P
Subjt:  VTHNNGKKHKARLLKLSNDCKLEDHKEKP
TrEMBL top hitse value%identityAlignment
A0A1S3B9S7 uncharacterized protein LOC1034873435.5e-1759.38Show/hide
Query:  DGKKHMAKEGRRGLQT---QEPSE-EEDQKEKLDDPQKSAEQKAAVE-NKRAKFWCKICEIGTHCMANMVTHNNGKKHKARLLKLSNDCKLEDHKE
        +GKKH AKEGRR +Q    +EP++ EED KEKLD P K+ ++  A+E NKR KF C+IC +G   MA MV+HNNG+KHKARLLKLS  CK ED K+
Subjt:  DGKKHMAKEGRRGLQT---QEPSE-EEDQKEKLDDPQKSAEQKAAVE-NKRAKFWCKICEIGTHCMANMVTHNNGKKHKARLLKLSNDCKLEDHKE
A0A438DRT7 Uncharacterized protein7.0e-0435.71Show/hide
Query:  KKHMAKEGRRG-----LQTQEPSEEEDQKEKLDDPQKSAEQKAAVENKRAKFWCKICEIGTHCMANMVTHNNGKKHKARLLKLS
        KKH A++G +      LQ  E  E+  +  +   P+        ++ K+ KFWC++C +G +C   M TH NGKKH ARL ++S
Subjt:  KKHMAKEGRRG-----LQTQEPSEEEDQKEKLDDPQKSAEQKAAVENKRAKFWCKICEIGTHCMANMVTHNNGKKHKARLLKLS
A0A5D3B800 UBP1-associated proteins 1C-like isoform X35.5e-1759.38Show/hide
Query:  DGKKHMAKEGRRGLQT---QEPSE-EEDQKEKLDDPQKSAEQKAAVE-NKRAKFWCKICEIGTHCMANMVTHNNGKKHKARLLKLSNDCKLEDHKE
        +GKKH AKEGRR +Q    +EP++ EED KEKLD P K+ ++  A+E NKR KF C+IC +G   MA MV+HNNG+KHKARLLKLS  CK ED K+
Subjt:  DGKKHMAKEGRRGLQT---QEPSE-EEDQKEKLDDPQKSAEQKAAVE-NKRAKFWCKICEIGTHCMANMVTHNNGKKHKARLLKLSNDCKLEDHKE
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGTAGGGCTGAGGGCAGGACGGAAGGCTTATCGTTTGACGATCAGTTTTCCGTCAGATTGTTGGACCAGATCAGGATGAATCACATCGTGAATCCGTCTAGAGGTTT
ACAGACTGTTCCAGTTTCCAGTTCTTTGCTCTTACCTGTTCGTCCAGTTCCGGACCCTCAAAACGAAGAACCGAAGCCTTTCGATGGCAAGAAGCACATGGCCAAAGAAG
GCCGGCGTGGCTTACAAACTCAAGAACCGAGCGAAGAGGAAGATCAGAAAGAAAAATTAGACGATCCTCAGAAGAGCGCAGAACAAAAAGCAGCCGTTGAAAACAAGCGG
GCTAAATTCTGGTGCAAGATTTGCGAAATTGGAACCCATTGTATGGCTAATATGGTCACACATAACAATGGGAAGAAGCATAAGGCTCGTCTGTTGAAACTTTCTAATGA
CTGCAAATTGGAAGACCACAAGGAGAAACCCTTATGA
mRNA sequenceShow/hide mRNA sequence
ATGCGTAGGGCTGAGGGCAGGACGGAAGGCTTATCGTTTGACGATCAGTTTTCCGTCAGATTGTTGGACCAGATCAGGATGAATCACATCGTGAATCCGTCTAGAGGTTT
ACAGACTGTTCCAGTTTCCAGTTCTTTGCTCTTACCTGTTCGTCCAGTTCCGGACCCTCAAAACGAAGAACCGAAGCCTTTCGATGGCAAGAAGCACATGGCCAAAGAAG
GCCGGCGTGGCTTACAAACTCAAGAACCGAGCGAAGAGGAAGATCAGAAAGAAAAATTAGACGATCCTCAGAAGAGCGCAGAACAAAAAGCAGCCGTTGAAAACAAGCGG
GCTAAATTCTGGTGCAAGATTTGCGAAATTGGAACCCATTGTATGGCTAATATGGTCACACATAACAATGGGAAGAAGCATAAGGCTCGTCTGTTGAAACTTTCTAATGA
CTGCAAATTGGAAGACCACAAGGAGAAACCCTTATGA
Protein sequenceShow/hide protein sequence
MRRAEGRTEGLSFDDQFSVRLLDQIRMNHIVNPSRGLQTVPVSSSLLLPVRPVPDPQNEEPKPFDGKKHMAKEGRRGLQTQEPSEEEDQKEKLDDPQKSAEQKAAVENKR
AKFWCKICEIGTHCMANMVTHNNGKKHKARLLKLSNDCKLEDHKEKPL