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Lsi06G011530 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi06G011530
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRNase H domain-containing protein
Genome locationchr06:21741325..21743128
RNA-Seq ExpressionLsi06G011530
SyntenyLsi06G011530
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EEC76169.1 hypothetical protein OsI_13484 [Oryza sativa Indica Group]7.6e-0747.3Show/hide
Query:  KLNVDAGFIPETNEASARIIIRDNEGRVMLPAFKSLGPLSHMDLAEGCAVQTGISLSLEMDFRSLIVETDSLQV
        K+NVDAGF  ET EASA I+IRD  G ++L A K+L P S  + AE  A   GI  +L+     +I+ETD+ +V
Subjt:  KLNVDAGFIPETNEASARIIIRDNEGRVMLPAFKSLGPLSHMDLAEGCAVQTGISLSLEMDFRSLIVETDSLQV

EEE59920.1 hypothetical protein OsJ_12548 [Oryza sativa Japonica Group]7.6e-0747.3Show/hide
Query:  KLNVDAGFIPETNEASARIIIRDNEGRVMLPAFKSLGPLSHMDLAEGCAVQTGISLSLEMDFRSLIVETDSLQV
        K+NVDAGF  ET EASA I+IRD  G ++L A K+L P S  + AE  A   GI  +L+     +I+ETD+ +V
Subjt:  KLNVDAGFIPETNEASARIIIRDNEGRVMLPAFKSLGPLSHMDLAEGCAVQTGISLSLEMDFRSLIVETDSLQV

XP_022135942.1 uncharacterized protein LOC111007775 [Momordica charantia]2.2e-0637.37Show/hide
Query:  FYKLNVDAGFIPETNEASARIIIRDNEGRVMLPAFKSLGPLSHMDLAEGCAVQTGISLSLEMDFRSLIVETDSLQVHHLLYSEVEDIYELGRLFFTLKN
        F+K+NVDA F      A   I+IRD+   V+L A   +  +S + LAE  A Q G+ L++E       +ETDS QV +LL ++ ED  E+G L  ++++
Subjt:  FYKLNVDAGFIPETNEASARIIIRDNEGRVMLPAFKSLGPLSHMDLAEGCAVQTGISLSLEMDFRSLIVETDSLQVHHLLYSEVEDIYELGRLFFTLKN

XP_022150944.1 uncharacterized protein LOC111018973 [Momordica charantia]9.0e-0841.67Show/hide
Query:  KLNVDAGFIPETNEASARIIIRDNEGRVMLPAFKSLGPLSHMDLAEGCAVQTGISLSLEMDFRSLIVETDSLQVHHLLYSEVEDIYELGRLFFTLK
        K+NVDA F  E+  A   +IIRD+ G V L A + L   S +D  EG AV  GI L++E  F    +ETDSL++ +LL ++  D  E+G L   +K
Subjt:  KLNVDAGFIPETNEASARIIIRDNEGRVMLPAFKSLGPLSHMDLAEGCAVQTGISLSLEMDFRSLIVETDSLQVHHLLYSEVEDIYELGRLFFTLK

XP_030946082.1 uncharacterized protein LOC115970617 [Quercus lobata]2.2e-0636.45Show/hide
Query:  KLNVDAGFIPETNEASARIIIRDNEGRVMLPAFKSLGPLSHMDLAEGCAVQTGISLSLEMDFRSLIVETDSLQVHHLLYSEVEDIYELGRLFFTLKNGL-
        K+N D     ET++A   +++RD++GRVM    K     S  D  E  AV   IS +LE+   S+IVE DS  +   L SE E     G L  ++K  L 
Subjt:  KLNVDAGFIPETNEASARIIIRDNEGRVMLPAFKSLGPLSHMDLAEGCAVQTGISLSLEMDFRSLIVETDSLQVHHLLYSEVEDIYELGRLFFTLKNGL-

Query:  LRSCVYF
        + SC+ F
Subjt:  LRSCVYF

TrEMBL top hitse value%identityAlignment
A0A5B7BLL9 RNase H domain-containing protein1.6e-0532.35Show/hide
Query:  YKLNVDAGFIPETNEASARIIIRDNEGRVMLPAFKSLGPLSHMDLAEGCAVQTGISLSLEMDFRSLIVETDSLQVHHLLYSEVEDIYELGRLFFTLKNGL
        YK+NVD  F+PE N  S   +IR+ +G V+    + L   S ++ AE  A+  GI  + ++  + L+VE D L +   + S  ED   +G +   +K G 
Subjt:  YKLNVDAGFIPETNEASARIIIRDNEGRVMLPAFKSLGPLSHMDLAEGCAVQTGISLSLEMDFRSLIVETDSLQVHHLLYSEVEDIYELGRLFFTLKNGL

Query:  LR
        +R
Subjt:  LR

A0A6J1C467 uncharacterized protein LOC1110077751.1e-0637.37Show/hide
Query:  FYKLNVDAGFIPETNEASARIIIRDNEGRVMLPAFKSLGPLSHMDLAEGCAVQTGISLSLEMDFRSLIVETDSLQVHHLLYSEVEDIYELGRLFFTLKN
        F+K+NVDA F      A   I+IRD+   V+L A   +  +S + LAE  A Q G+ L++E       +ETDS QV +LL ++ ED  E+G L  ++++
Subjt:  FYKLNVDAGFIPETNEASARIIIRDNEGRVMLPAFKSLGPLSHMDLAEGCAVQTGISLSLEMDFRSLIVETDSLQVHHLLYSEVEDIYELGRLFFTLKN

A0A6J1DBJ7 uncharacterized protein LOC1110189734.4e-0841.67Show/hide
Query:  KLNVDAGFIPETNEASARIIIRDNEGRVMLPAFKSLGPLSHMDLAEGCAVQTGISLSLEMDFRSLIVETDSLQVHHLLYSEVEDIYELGRLFFTLK
        K+NVDA F  E+  A   +IIRD+ G V L A + L   S +D  EG AV  GI L++E  F    +ETDSL++ +LL ++  D  E+G L   +K
Subjt:  KLNVDAGFIPETNEASARIIIRDNEGRVMLPAFKSLGPLSHMDLAEGCAVQTGISLSLEMDFRSLIVETDSLQVHHLLYSEVEDIYELGRLFFTLK

B8AJV1 Uncharacterized protein3.7e-0747.3Show/hide
Query:  KLNVDAGFIPETNEASARIIIRDNEGRVMLPAFKSLGPLSHMDLAEGCAVQTGISLSLEMDFRSLIVETDSLQV
        K+NVDAGF  ET EASA I+IRD  G ++L A K+L P S  + AE  A   GI  +L+     +I+ETD+ +V
Subjt:  KLNVDAGFIPETNEASARIIIRDNEGRVMLPAFKSLGPLSHMDLAEGCAVQTGISLSLEMDFRSLIVETDSLQV

B9FBS8 Uncharacterized protein3.7e-0747.3Show/hide
Query:  KLNVDAGFIPETNEASARIIIRDNEGRVMLPAFKSLGPLSHMDLAEGCAVQTGISLSLEMDFRSLIVETDSLQV
        K+NVDAGF  ET EASA I+IRD  G ++L A K+L P S  + AE  A   GI  +L+     +I+ETD+ +V
Subjt:  KLNVDAGFIPETNEASARIIIRDNEGRVMLPAFKSLGPLSHMDLAEGCAVQTGISLSLEMDFRSLIVETDSLQV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAAATCAAAGGGCAGAAGATGGGAACTGTCTGATTCGCCCTTCAATCCAGGTACTGACGTCTCTAGTATTGAGAGAATCTACATTATATCCTTTGGCTCTGTAAA
GTGGCTTGCAAGGAATGAGCTCGGTCTTCCTTTGCTCATATGTGGTGCAGTACTTCAAGAAAAACAATCTGTGTTCTTATGGAGATTCATGATCAACTGCTGGTTTTATA
AACTCAATGTTGATGCAGGTTTCATTCCAGAAACAAATGAAGCCTCAGCGAGAATTATCATTCGAGATAATGAAGGGCGGGTCATGCTACCTGCTTTCAAAAGTTTAGGT
CCTCTTTCTCATATGGACTTGGCCGAGGGATGTGCAGTGCAGACTGGGATCTCCCTATCTCTTGAAATGGATTTTCGATCTTTGATTGTGGAAACTGATTCGTTGCAGGT
TCATCATTTGTTATATTCTGAGGTGGAAGACATTTATGAACTAGGTCGTTTATTCTTTACTTTAAAGAATGGTTTGTTGCGCTCCTGTGTATATTTCTTCTCTCTCCTCA
CTCTGGAAAGAGAGCTGCTCATTCGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGAAATCAAAGGGCAGAAGATGGGAACTGTCTGATTCGCCCTTCAATCCAGGTACTGACGTCTCTAGTATTGAGAGAATCTACATTATATCCTTTGGCTCTGTAAA
GTGGCTTGCAAGGAATGAGCTCGGTCTTCCTTTGCTCATATGTGGTGCAGTACTTCAAGAAAAACAATCTGTGTTCTTATGGAGATTCATGATCAACTGCTGGTTTTATA
AACTCAATGTTGATGCAGGTTTCATTCCAGAAACAAATGAAGCCTCAGCGAGAATTATCATTCGAGATAATGAAGGGCGGGTCATGCTACCTGCTTTCAAAAGTTTAGGT
CCTCTTTCTCATATGGACTTGGCCGAGGGATGTGCAGTGCAGACTGGGATCTCCCTATCTCTTGAAATGGATTTTCGATCTTTGATTGTGGAAACTGATTCGTTGCAGGT
TCATCATTTGTTATATTCTGAGGTGGAAGACATTTATGAACTAGGTCGTTTATTCTTTACTTTAAAGAATGGTTTGTTGCGCTCCTGTGTATATTTCTTCTCTCTCCTCA
CTCTGGAAAGAGAGCTGCTCATTCGTTGACTCGATTGGCTTTGACAATTCGTGTTGATCACATTTAGTTAGAACGTTAACATCTTGAAATTTCTGATATTTTAGCGGATT
CTTTGTTTGTTGTTTGCTCTTTTATTTTCATTTGCTATAGAAAAAAATGTTTGATTTTTCAT
Protein sequenceShow/hide protein sequence
MKKSKGRRWELSDSPFNPGTDVSSIERIYIISFGSVKWLARNELGLPLLICGAVLQEKQSVFLWRFMINCWFYKLNVDAGFIPETNEASARIIIRDNEGRVMLPAFKSLG
PLSHMDLAEGCAVQTGISLSLEMDFRSLIVETDSLQVHHLLYSEVEDIYELGRLFFTLKNGLLRSCVYFFSLLTLERELLIR