CuGenDBv2

Gene ID	Lsi06G011680
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	cytochrome c oxidase assembly factor 6
Genome location	chr06:21944604..21948213
RNA-Seq Expression	Lsi06G011680
Synteny	Lsi06G011680
Gene Ontology terms	GO:0005739 - mitochondrion (cellular component) GO:0045277 - respiratory chain complex IV (cellular component)
InterPro domains	IPR003213 - Cytochrome c oxidase, subunit VIb IPR036549 - Cytochrome c oxidase, subunit VIb superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

XP_008443871.1 PREDICTED: uncharacterized protein LOC103487365 isoform X1 [Cucumis melo]

9.3e-53

90.35

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Query:  MAVEADAPGSLDEVHSDVLAESRQACYTARDAFYACVEKESDKKPTEIASVGLIYPAECKALRANFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG
        MAVEAD+ G  DEVH+DVL+ESRQACY ARDAFYACVEKESDKKPTEIASVGLIYPAECKALRA++VKLCRASWVKHFDRKFCQNSRVQRLLDDKD RRG
Subjt:  MAVEADAPGSLDEVHSDVLAESRQACYTARDAFYACVEKESDKKPTEIASVGLIYPAECKALRANFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG

Query:  PLILPQPYTFKPTS
        PLILPQPYTFKPT+
Subjt:  PLILPQPYTFKPTS

XP_011655945.1 uncharacterized protein LOC101212489 isoform X1 [Cucumis sativus]

2.3e-51

87.72

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Query:  MAVEADAPGSLDEVHSDVLAESRQACYTARDAFYACVEKESDKKPTEIASVGLIYPAECKALRANFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG
        MA EAD+ G  DEVH+DVL+ESRQACY ARDAFYAC+EKESDKKPTEIASVGLIYPAECKALRA++ KLCRASWVKHFDRKFCQNSRVQRLLDDKD RRG
Subjt:  MAVEADAPGSLDEVHSDVLAESRQACYTARDAFYACVEKESDKKPTEIASVGLIYPAECKALRANFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG

Query:  PLILPQPYTFKPTS
        PLILPQPYTFKPT+
Subjt:  PLILPQPYTFKPTS

XP_022134674.1 uncharacterized protein LOC111006886 [Momordica charantia]

2.9e-54

94.74

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Query:  MAVEADAPGSLDEVHSDVLAESRQACYTARDAFYACVEKESDKKPTEIASVGLIYPAECKALRANFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG
        MAVEADA G LDEVHSDVLA SRQACY ARDAFYACVEKESDKKPTEIASVGLIYPAECKALRA FVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG
Subjt:  MAVEADAPGSLDEVHSDVLAESRQACYTARDAFYACVEKESDKKPTEIASVGLIYPAECKALRANFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG

Query:  PLILPQPYTFKPTS
        PL LPQPYTFKPTS
Subjt:  PLILPQPYTFKPTS

XP_022973432.1 cytochrome c oxidase assembly factor 6 [Cucurbita maxima]

3.9e-51

87.72

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Query:  MAVEADAPGSLDEVHSDVLAESRQACYTARDAFYACVEKESDKKPTEIASVGLIYPAECKALRANFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG
        MA+E D  G  +EVH+DVLAE RQACY ARDAFYACVEKESDKKPTEIASVGL+YPAECKA RA FVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG
Subjt:  MAVEADAPGSLDEVHSDVLAESRQACYTARDAFYACVEKESDKKPTEIASVGLIYPAECKALRANFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG

Query:  PLILPQPYTFKPTS
        PL+LPQPYTFKPTS
Subjt:  PLILPQPYTFKPTS

XP_038878579.1 uncharacterized protein LOC120070767 [Benincasa hispida]

3.4e-55

95.61

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Query:  MAVEADAPGSLDEVHSDVLAESRQACYTARDAFYACVEKESDKKPTEIASVGLIYPAECKALRANFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG
        MAVEADA G LDEVHSDVLAESRQACY ARDAFYACVEKESDKKPTEIASVGLIYPAECKALRA FVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG
Subjt:  MAVEADAPGSLDEVHSDVLAESRQACYTARDAFYACVEKESDKKPTEIASVGLIYPAECKALRANFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG

Query:  PLILPQPYTFKPTS
        PLILPQPYTFKPT+
Subjt:  PLILPQPYTFKPTS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LTX1 Uncharacterized protein

1.1e-51

87.72

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Query:  MAVEADAPGSLDEVHSDVLAESRQACYTARDAFYACVEKESDKKPTEIASVGLIYPAECKALRANFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG
        MA EAD+ G  DEVH+DVL+ESRQACY ARDAFYAC+EKESDKKPTEIASVGLIYPAECKALRA++ KLCRASWVKHFDRKFCQNSRVQRLLDDKD RRG
Subjt:  MAVEADAPGSLDEVHSDVLAESRQACYTARDAFYACVEKESDKKPTEIASVGLIYPAECKALRANFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG

Query:  PLILPQPYTFKPTS
        PLILPQPYTFKPT+
Subjt:  PLILPQPYTFKPTS

A0A1S3B9T5 uncharacterized protein LOC103487365 isoform X1

4.5e-53

90.35

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Query:  MAVEADAPGSLDEVHSDVLAESRQACYTARDAFYACVEKESDKKPTEIASVGLIYPAECKALRANFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG
        MAVEAD+ G  DEVH+DVL+ESRQACY ARDAFYACVEKESDKKPTEIASVGLIYPAECKALRA++VKLCRASWVKHFDRKFCQNSRVQRLLDDKD RRG
Subjt:  MAVEADAPGSLDEVHSDVLAESRQACYTARDAFYACVEKESDKKPTEIASVGLIYPAECKALRANFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG

Query:  PLILPQPYTFKPTS
        PLILPQPYTFKPT+
Subjt:  PLILPQPYTFKPTS

A0A5A7SVN2 Cytochrome c oxidase assembly factor 6 isoform X3

4.5e-53

90.35

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Query:  MAVEADAPGSLDEVHSDVLAESRQACYTARDAFYACVEKESDKKPTEIASVGLIYPAECKALRANFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG
        MAVEAD+ G  DEVH+DVL+ESRQACY ARDAFYACVEKESDKKPTEIASVGLIYPAECKALRA++VKLCRASWVKHFDRKFCQNSRVQRLLDDKD RRG
Subjt:  MAVEADAPGSLDEVHSDVLAESRQACYTARDAFYACVEKESDKKPTEIASVGLIYPAECKALRANFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG

Query:  PLILPQPYTFKPTS
        PLILPQPYTFKPT+
Subjt:  PLILPQPYTFKPTS

A0A6J1BZF0 uncharacterized protein LOC111006886

1.4e-54

94.74

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Query:  MAVEADAPGSLDEVHSDVLAESRQACYTARDAFYACVEKESDKKPTEIASVGLIYPAECKALRANFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG
        MAVEADA G LDEVHSDVLA SRQACY ARDAFYACVEKESDKKPTEIASVGLIYPAECKALRA FVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG
Subjt:  MAVEADAPGSLDEVHSDVLAESRQACYTARDAFYACVEKESDKKPTEIASVGLIYPAECKALRANFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG

Query:  PLILPQPYTFKPTS
        PL LPQPYTFKPTS
Subjt:  PLILPQPYTFKPTS

A0A6J1I7I2 cytochrome c oxidase assembly factor 6

1.9e-51

87.72

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Query:  MAVEADAPGSLDEVHSDVLAESRQACYTARDAFYACVEKESDKKPTEIASVGLIYPAECKALRANFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG
        MA+E D  G  +EVH+DVLAE RQACY ARDAFYACVEKESDKKPTEIASVGL+YPAECKA RA FVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG
Subjt:  MAVEADAPGSLDEVHSDVLAESRQACYTARDAFYACVEKESDKKPTEIASVGLIYPAECKALRANFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG

Query:  PLILPQPYTFKPTS
        PL+LPQPYTFKPTS
Subjt:  PLILPQPYTFKPTS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G58005.1 Cytochrome c oxidase, subunit Vib family protein

3.9e-41

65.49

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Query:  MAVEADAPGSLDEVHSDVLAESRQACYTARDAFYACVEKESDKKPTEIASVGLIYPAECKALRANFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG
        MA++  A  + ++VH DVL ++R ACY ARDAFYAC+EKES KKPTEIA+VGL+YP EC   R  FV  CR+SWVKHFDR++C+N RVQRLLDD D R+G
Subjt:  MAVEADAPGSLDEVHSDVLAESRQACYTARDAFYACVEKESDKKPTEIASVGLIYPAECKALRANFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG

Query:  PLILPQPYTFKPT
        P+ LPQPYTFKP+
Subjt:  PLILPQPYTFKPT

AT5G58005.2 Cytochrome c oxidase, subunit Vib family protein

3.9e-41

65.49

Show/hide

Query:  MAVEADAPGSLDEVHSDVLAESRQACYTARDAFYACVEKESDKKPTEIASVGLIYPAECKALRANFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG
        MA++  A  + ++VH DVL ++R ACY ARDAFYAC+EKES KKPTEIA+VGL+YP EC   R  FV  CR+SWVKHFDR++C+N RVQRLLDD D R+G
Subjt:  MAVEADAPGSLDEVHSDVLAESRQACYTARDAFYACVEKESDKKPTEIASVGLIYPAECKALRANFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG

Query:  PLILPQPYTFKPT
        P+ LPQPYTFKP+
Subjt:  PLILPQPYTFKPT

Sequences

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CDS sequence

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ATGGCTGTCGAAGCTGACGCGCCTGGAAGCTTAGATGAAGTGCATAGCGACGTTCTAGCGGAATCAAGACAAGCTTGCTACACGGCTCGCGATGCTTTTTATGCTTGTGT
GGAGAAGGAATCGGACAAAAAGCCTACTGAAATTGCTTCTGTTGGCCTTATTTACCCTGCCGAGTGTAAAGCTTTGAGAGCCAATTTTGTCAAACTTTGCAGAGCGTCTT
GGGTGAAGCATTTTGATAGGAAGTTTTGTCAGAACAGTAGGGTTCAAAGACTCCTAGATGACAAAGATTCGAGGAGGGGTCCCTTGATACTTCCGCAACCTTACACTTTT
AAGCCCACTAGTTAA

mRNA sequence

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AAACTGTGGAGCGAAATTGGTTGGAACGACGAAAAACCCAGAGAACAAGCAACCATAGCAGCTCCATCTCGGCAGGAACTATGGCTGTCGAAGCTGACGCGCCTGGAAGC
TTAGATGAAGTGCATAGCGACGTTCTAGCGGAATCAAGACAAGCTTGCTACACGGCTCGCGATGCTTTTTATGCTTGTGTGGAGAAGGAATCGGACAAAAAGCCTACTGA
AATTGCTTCTGTTGGCCTTATTTACCCTGCCGAGTGTAAAGCTTTGAGAGCCAATTTTGTCAAACTTTGCAGAGCGTCTTGGGTGAAGCATTTTGATAGGAAGTTTTGTC
AGAACAGTAGGGTTCAAAGACTCCTAGATGACAAAGATTCGAGGAGGGGTCCCTTGATACTTCCGCAACCTTACACTTTTAAGCCCACTAGTTAAACTAAACACCATCCC
CCTGGAAAGCTGGAACAACTTTGGGCGGGCTGTAAGTACTGGAAGTTTATATCCGTTCTACGGTTACCTTGTGAGAAAGACAGGATCAAACCAGGAGGCTCCTTAGTACT
GACTGGATGTCTTGGGACTTGGGAGTAAGACTGCTGATTGAAATAGGTTTTCCGAATGTGCTAAGGTTGGGTCTTTCAATCTACCTTCCTAAGAAGGTTGAAGGCTGGTT
GCTGGGAGCTTTGTTGGGGACAAGTTTTTGGGGCTAGGCAAGTTGTGTCGTGAAAGCGGTGATTTGGACAACTTGGAAAGCCTTAGAATCTTTGAGGATAGTTCAAGTTT
GGAAGATTCTTTTGTTTATAATATACAACAAATGACTTCTTGGTGGTGTTCTCATCCCAAAGAATTTTGGTGTACCTGATTATTAGAACTTGGAACTTAGAAAGGCCTTT
TTGTGCTGGTTCTTTTGCTTGGAAAGAGGTTCTTTCTACTCCTTACCTTTGGGTTGGCTTCCTCTTTGTCCATCTCTTTTTCTTATAAAAATATACATGCACACAAACAC
TCACCCACATAGAGAGAGAGAGATACAAGGACGATCTCCGTTGGGTTATTGACATTGTTATATATTGAAAAATTTCTATTACTTCTGTGGTACCACACTCTTTCTATTTG
TTCACACTACAAATATGTCTCATAAATGCCAGTAGACCTTGCTCTATTTTTAAAAATATGATAATGTGGTACATAATAA

Protein sequence

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MAVEADAPGSLDEVHSDVLAESRQACYTARDAFYACVEKESDKKPTEIASVGLIYPAECKALRANFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLILPQPYTF
KPTS

Lsi06G011680 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome