; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi06G011780 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi06G011780
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionSodium/calcium exchanger membrane region
Genome locationchr06:22076048..22076599
RNA-Seq ExpressionLsi06G011780
SyntenyLsi06G011780
Gene Ontology termsNA
InterPro domainsIPR007789 - Protein of unknown function DUF688


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0058272.1 hypothetical protein E6C27_scaffold274G005980 [Cucumis melo var. makuwa]1.6e-6777.78Show/hide
Query:  AKDHTLH-LSEKPFSLLQANELFVHKILSRNSSFGRSARLPACSLPGQIPFNWEAQPGLPKNQPSQILPPLDLPPPSPSAVDLSITPHIVPKRPPAKICF
        AKDHTLH LSEKPFSLLQAN+ FVHKILSRNSSFGRSARLPAC LPGQIPFNWE QPGLPKNQPS+  PP +LPPPS SA  LS TPH+VPK+ P KI F
Subjt:  AKDHTLH-LSEKPFSLLQANELFVHKILSRNSSFGRSARLPACSLPGQIPFNWEAQPGLPKNQPSQILPPLDLPPPSPSAVDLSITPHIVPKRPPAKICF

Query:  WKKPRRKLRRVVNKNGAFGSSPS-RRHVDRESEFCRKSNDESSSSSSSLSCISYSLSSNSSSA-----LYNRRRSKLGSLAKNFIRWAF
        W K RRK RR V KNGA GSS S RRHVDRESEFCR+ +++ S SSSSLSCISYSLSSNSSSA       NRRRSKLGSLAK FIRWAF
Subjt:  WKKPRRKLRRVVNKNGAFGSSPS-RRHVDRESEFCRKSNDESSSSSSSLSCISYSLSSNSSSA-----LYNRRRSKLGSLAKNFIRWAF

KAG6589705.1 Replication protein A 32 kDa subunit B, partial [Cucurbita argyrosperma subsp. sororia]2.3e-5372.28Show/hide
Query:  MAKDHTLHLSEKPFSLLQANELFVHKILSRNSSFGRSARLPACSLPGQIPFNWEAQPGLPKNQPSQILPPLDLPPPSPSAVD-LSITPHIVP-KRPPAKI
        M  +H LHLSE PFSLLQANELFVHKILSRNSS GRSARLPAC LPGQIPF WEAQPGLPK++PS+ L     PPPSP++V   S TPH VP ++  AKI
Subjt:  MAKDHTLHLSEKPFSLLQANELFVHKILSRNSSFGRSARLPACSLPGQIPFNWEAQPGLPKNQPSQILPPLDLPPPSPSAVD-LSITPHIVP-KRPPAKI

Query:  CFWKKPRRKLRRVVNKNGAFG-SSPSRRHVDRESEFCRKSNDESSSSSSSLSCISYSLSSNSSSAL-YNRRRSKLGSLAKNFIR
         FW KPR+KLR VV KNGAFG SS SRRHV++ESEF RKSNDE   SSSSLSCIS+SLSS+SSS+  Y RRRSKL SLAK F+R
Subjt:  CFWKKPRRKLRRVVNKNGAFG-SSPSRRHVDRESEFCRKSNDESSSSSSSLSCISYSLSSNSSSAL-YNRRRSKLGSLAKNFIR

KGN65459.1 hypothetical protein Csa_020126 [Cucumis sativus]7.4e-6877.13Show/hide
Query:  AKDHTLH-LSEKPFSLLQANELFVHKILSRNSSFGRSARLPACSLPGQIPFNWEAQPGLPKNQPSQILPPLDLPPPSPSAVDLSITPHIVPKRPPAKICF
        AKDHTLH LSEKPFSLLQAN+LFVHKILSRNSSFGRSARLPAC LPGQ+PFNWEAQPGLPKNQPS   PP+ LPPPS SA+ LS TPH+VPK+ P KI F
Subjt:  AKDHTLH-LSEKPFSLLQANELFVHKILSRNSSFGRSARLPACSLPGQIPFNWEAQPGLPKNQPSQILPPLDLPPPSPSAVDLSITPHIVPKRPPAKICF

Query:  WKKPRRKLRRVVNKNGAFGSSPSRRHVDRESEFCRKSNDESSSSSSSLSCISYSLSSNSSSA-----LYNRRRSKLGSLAKNFIRWAF
        W K RRK RR V K+GA GSS  RRHVDR+SEFCRK +++ SSSSSSLSCISYS+SSNSSSA       NRRR KLGSLAK FIRWAF
Subjt:  WKKPRRKLRRVVNKNGAFGSSPSRRHVDRESEFCRKSNDESSSSSSSLSCISYSLSSNSSSA-----LYNRRRSKLGSLAKNFIRWAF

TYK11824.1 hypothetical protein E5676_scaffold152G00370 [Cucumis melo var. makuwa]1.6e-6777.78Show/hide
Query:  AKDHTLH-LSEKPFSLLQANELFVHKILSRNSSFGRSARLPACSLPGQIPFNWEAQPGLPKNQPSQILPPLDLPPPSPSAVDLSITPHIVPKRPPAKICF
        AKDHTLH LSEKPFSLLQAN+ FVHKILSRNSSFGRSARLPAC LPGQIPFNWE QPGLPKNQPS+  PP +LPPPS SA  LS TPH+VPK+ P KI F
Subjt:  AKDHTLH-LSEKPFSLLQANELFVHKILSRNSSFGRSARLPACSLPGQIPFNWEAQPGLPKNQPSQILPPLDLPPPSPSAVDLSITPHIVPKRPPAKICF

Query:  WKKPRRKLRRVVNKNGAFGSSPS-RRHVDRESEFCRKSNDESSSSSSSLSCISYSLSSNSSSA-----LYNRRRSKLGSLAKNFIRWAF
        W K RRK RR V KNGA GSS S RRHVDRESEFCR+ +++ S SSSSLSCISYSLSSNSSSA       NRRRSKLGSLAK FIRWAF
Subjt:  WKKPRRKLRRVVNKNGAFGSSPS-RRHVDRESEFCRKSNDESSSSSSSLSCISYSLSSNSSSA-----LYNRRRSKLGSLAKNFIRWAF

XP_022987494.1 uncharacterized protein LOC111485037 [Cucurbita maxima]8.5e-5673.02Show/hide
Query:  MAKDHTLHLSEKPFSLLQANELFVHKILSRNSSFGRSARLPACSLPGQIPFNWEAQPGLPKNQPSQILPPLDLPPPSPSAVD-LSITPHIVPK-RPPAKI
        M  DH LH SE PFSLLQANELFVHKILSRNSS GRSARLPAC LPGQIPF WEAQPGLPK++PS+ L     PPP P+ VD  S TPH VPK +  AKI
Subjt:  MAKDHTLHLSEKPFSLLQANELFVHKILSRNSSFGRSARLPACSLPGQIPFNWEAQPGLPKNQPSQILPPLDLPPPSPSAVD-LSITPHIVPK-RPPAKI

Query:  CFWKKPRRKLRRVVNKNGAFGSSPSRR-HVDRESEFCRKSNDESSSSS--SSLSCISYSLSSNSSSAL-YNRRRSKLGSLAKNFIRWAF
          W KPR+KLR VV KNGAFGSS S R HV++ESEFCRKSNDESSSS+  SSLSCIS+SLSS+SSS+  Y RRRSKL SLAK F+RWAF
Subjt:  CFWKKPRRKLRRVVNKNGAFGSSPSRR-HVDRESEFCRKSNDESSSSS--SSLSCISYSLSSNSSSAL-YNRRRSKLGSLAKNFIRWAF

TrEMBL top hitse value%identityAlignment
A0A0A0LWV3 Uncharacterized protein3.6e-6877.13Show/hide
Query:  AKDHTLH-LSEKPFSLLQANELFVHKILSRNSSFGRSARLPACSLPGQIPFNWEAQPGLPKNQPSQILPPLDLPPPSPSAVDLSITPHIVPKRPPAKICF
        AKDHTLH LSEKPFSLLQAN+LFVHKILSRNSSFGRSARLPAC LPGQ+PFNWEAQPGLPKNQPS   PP+ LPPPS SA+ LS TPH+VPK+ P KI F
Subjt:  AKDHTLH-LSEKPFSLLQANELFVHKILSRNSSFGRSARLPACSLPGQIPFNWEAQPGLPKNQPSQILPPLDLPPPSPSAVDLSITPHIVPKRPPAKICF

Query:  WKKPRRKLRRVVNKNGAFGSSPSRRHVDRESEFCRKSNDESSSSSSSLSCISYSLSSNSSSA-----LYNRRRSKLGSLAKNFIRWAF
        W K RRK RR V K+GA GSS  RRHVDR+SEFCRK +++ SSSSSSLSCISYS+SSNSSSA       NRRR KLGSLAK FIRWAF
Subjt:  WKKPRRKLRRVVNKNGAFGSSPSRRHVDRESEFCRKSNDESSSSSSSLSCISYSLSSNSSSA-----LYNRRRSKLGSLAKNFIRWAF

A0A2P5E1Z5 Uncharacterized protein9.9e-1038.14Show/hide
Query:  SEKP-FSLLQANELFVHKILSRNSSFG---RSARLPACSLPGQIPFNWEAQPGLPKNQPSQIL-------PPLDLPPPSPSAVDLSITPHIVPKRPPAKI
        SEKP  S+LQANELFV KILSRNSS G    S  L       ++PF WE+QPG PK+ P           P +DLP P+  A  +   P  V        
Subjt:  SEKP-FSLLQANELFVHKILSRNSSFG---RSARLPACSLPGQIPFNWEAQPGLPKNQPSQIL-------PPLDLPPPSPSAVDLSITPHIVPKRPPAKI

Query:  CFWKK-PRRKLRRVVNKNGAFGSSPSRRHVDRESEFCRKSNDESSSSSSSLSCIS----YSLSSNSSSALYN----RRRSKLGSLAKNFIRWAF
         FWKK  +R+ ++VV K    G S + R +D  +         S +SSS  SC S     S SS++S+  YN    + RS+L +LA   I+  F
Subjt:  CFWKK-PRRKLRRVVNKNGAFGSSPSRRHVDRESEFCRKSNDESSSSSSSLSCIS----YSLSSNSSSALYN----RRRSKLGSLAKNFIRWAF

A0A5A7UQX0 Uncharacterized protein8.0e-6877.78Show/hide
Query:  AKDHTLH-LSEKPFSLLQANELFVHKILSRNSSFGRSARLPACSLPGQIPFNWEAQPGLPKNQPSQILPPLDLPPPSPSAVDLSITPHIVPKRPPAKICF
        AKDHTLH LSEKPFSLLQAN+ FVHKILSRNSSFGRSARLPAC LPGQIPFNWE QPGLPKNQPS+  PP +LPPPS SA  LS TPH+VPK+ P KI F
Subjt:  AKDHTLH-LSEKPFSLLQANELFVHKILSRNSSFGRSARLPACSLPGQIPFNWEAQPGLPKNQPSQILPPLDLPPPSPSAVDLSITPHIVPKRPPAKICF

Query:  WKKPRRKLRRVVNKNGAFGSSPS-RRHVDRESEFCRKSNDESSSSSSSLSCISYSLSSNSSSA-----LYNRRRSKLGSLAKNFIRWAF
        W K RRK RR V KNGA GSS S RRHVDRESEFCR+ +++ S SSSSLSCISYSLSSNSSSA       NRRRSKLGSLAK FIRWAF
Subjt:  WKKPRRKLRRVVNKNGAFGSSPS-RRHVDRESEFCRKSNDESSSSSSSLSCISYSLSSNSSSA-----LYNRRRSKLGSLAKNFIRWAF

A0A5D3CKX4 Uncharacterized protein8.0e-6877.78Show/hide
Query:  AKDHTLH-LSEKPFSLLQANELFVHKILSRNSSFGRSARLPACSLPGQIPFNWEAQPGLPKNQPSQILPPLDLPPPSPSAVDLSITPHIVPKRPPAKICF
        AKDHTLH LSEKPFSLLQAN+ FVHKILSRNSSFGRSARLPAC LPGQIPFNWE QPGLPKNQPS+  PP +LPPPS SA  LS TPH+VPK+ P KI F
Subjt:  AKDHTLH-LSEKPFSLLQANELFVHKILSRNSSFGRSARLPACSLPGQIPFNWEAQPGLPKNQPSQILPPLDLPPPSPSAVDLSITPHIVPKRPPAKICF

Query:  WKKPRRKLRRVVNKNGAFGSSPS-RRHVDRESEFCRKSNDESSSSSSSLSCISYSLSSNSSSA-----LYNRRRSKLGSLAKNFIRWAF
        W K RRK RR V KNGA GSS S RRHVDRESEFCR+ +++ S SSSSLSCISYSLSSNSSSA       NRRRSKLGSLAK FIRWAF
Subjt:  WKKPRRKLRRVVNKNGAFGSSPS-RRHVDRESEFCRKSNDESSSSSSSLSCISYSLSSNSSSA-----LYNRRRSKLGSLAKNFIRWAF

A0A6J1JJ17 uncharacterized protein LOC1114850374.1e-5673.02Show/hide
Query:  MAKDHTLHLSEKPFSLLQANELFVHKILSRNSSFGRSARLPACSLPGQIPFNWEAQPGLPKNQPSQILPPLDLPPPSPSAVD-LSITPHIVPK-RPPAKI
        M  DH LH SE PFSLLQANELFVHKILSRNSS GRSARLPAC LPGQIPF WEAQPGLPK++PS+ L     PPP P+ VD  S TPH VPK +  AKI
Subjt:  MAKDHTLHLSEKPFSLLQANELFVHKILSRNSSFGRSARLPACSLPGQIPFNWEAQPGLPKNQPSQILPPLDLPPPSPSAVD-LSITPHIVPK-RPPAKI

Query:  CFWKKPRRKLRRVVNKNGAFGSSPSRR-HVDRESEFCRKSNDESSSSS--SSLSCISYSLSSNSSSAL-YNRRRSKLGSLAKNFIRWAF
          W KPR+KLR VV KNGAFGSS S R HV++ESEFCRKSNDESSSS+  SSLSCIS+SLSS+SSS+  Y RRRSKL SLAK F+RWAF
Subjt:  CFWKKPRRKLRRVVNKNGAFGSSPSRR-HVDRESEFCRKSNDESSSSS--SSLSCISYSLSSNSSSAL-YNRRRSKLGSLAKNFIRWAF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAAAGATCACACTCTTCATCTCTCTGAAAAACCCTTTTCATTACTCCAAGCAAATGAATTATTTGTCCACAAAATCCTTTCTAGAAACTCCTCATTTGGCCGCTC
TGCCCGTCTCCCTGCCTGTAGCCTGCCCGGTCAAATCCCTTTCAATTGGGAAGCCCAGCCCGGGCTGCCCAAAAACCAACCCTCCCAAATTCTCCCCCCGCTCGACCTCC
CGCCGCCGTCACCCTCCGCCGTAGACCTCTCCATAACTCCTCACATTGTCCCCAAGCGACCGCCTGCTAAGATTTGCTTTTGGAAAAAACCGAGGAGAAAATTGAGGCGT
GTGGTTAACAAAAACGGTGCGTTTGGATCGTCTCCATCCAGACGACATGTCGATCGTGAGAGTGAGTTTTGTAGGAAATCAAACGACGAGTCGTCATCGTCATCATCGTC
TTTGTCTTGTATTTCTTATTCCTTGTCTTCGAATTCTTCTTCTGCTCTTTATAACCGACGGCGCTCTAAACTGGGTAGCCTCGCCAAAAATTTCATTAGGTGGGCCTTCT
GA
mRNA sequenceShow/hide mRNA sequence
ATGGCAAAAGATCACACTCTTCATCTCTCTGAAAAACCCTTTTCATTACTCCAAGCAAATGAATTATTTGTCCACAAAATCCTTTCTAGAAACTCCTCATTTGGCCGCTC
TGCCCGTCTCCCTGCCTGTAGCCTGCCCGGTCAAATCCCTTTCAATTGGGAAGCCCAGCCCGGGCTGCCCAAAAACCAACCCTCCCAAATTCTCCCCCCGCTCGACCTCC
CGCCGCCGTCACCCTCCGCCGTAGACCTCTCCATAACTCCTCACATTGTCCCCAAGCGACCGCCTGCTAAGATTTGCTTTTGGAAAAAACCGAGGAGAAAATTGAGGCGT
GTGGTTAACAAAAACGGTGCGTTTGGATCGTCTCCATCCAGACGACATGTCGATCGTGAGAGTGAGTTTTGTAGGAAATCAAACGACGAGTCGTCATCGTCATCATCGTC
TTTGTCTTGTATTTCTTATTCCTTGTCTTCGAATTCTTCTTCTGCTCTTTATAACCGACGGCGCTCTAAACTGGGTAGCCTCGCCAAAAATTTCATTAGGTGGGCCTTCT
GA
Protein sequenceShow/hide protein sequence
MAKDHTLHLSEKPFSLLQANELFVHKILSRNSSFGRSARLPACSLPGQIPFNWEAQPGLPKNQPSQILPPLDLPPPSPSAVDLSITPHIVPKRPPAKICFWKKPRRKLRR
VVNKNGAFGSSPSRRHVDRESEFCRKSNDESSSSSSSLSCISYSLSSNSSSALYNRRRSKLGSLAKNFIRWAF