CuGenDBv2

Gene ID	Lsi06G012010
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Fiber protein Fb15
Genome location	chr06:22392927..22393199
RNA-Seq Expression	Lsi06G012010
Synteny	Lsi06G012010
Gene Ontology terms	GO:0009299 - mRNA transcription (biological process) GO:0009416 - response to light stimulus (biological process) GO:0005634 - nucleus (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KGN65836.2 hypothetical protein Csa_019715 [Cucumis sativus]

8.4e-41

94.44

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Query:  MAMKQFFSEIKGLKVKELPAYVKPMLSIDSAKKAVQRGLDNYNAKYIQTGSIDPLYHVCFGGMIFSYLVALPEERRHLEHQQHAKEHGGH
        MAMKQFFSEIKGLKVKELPAYVKPMLSID+AKKAV+R LDNYNAKYIQT SIDPL HVCFGGMIFSYLVALPEERRHLEHQQHAKEHGGH
Subjt:  MAMKQFFSEIKGLKVKELPAYVKPMLSIDSAKKAVQRGLDNYNAKYIQTGSIDPLYHVCFGGMIFSYLVALPEERRHLEHQQHAKEHGGH

XP_004146334.1 uncharacterized protein LOC101202935 [Cucumis sativus]

8.4e-41

94.44

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Query:  MAMKQFFSEIKGLKVKELPAYVKPMLSIDSAKKAVQRGLDNYNAKYIQTGSIDPLYHVCFGGMIFSYLVALPEERRHLEHQQHAKEHGGH
        MAMKQFFSEIKGLKVKELPAYVKPMLSID+AKKAV+R LDNYNAKYIQT SIDPL HVCFGGMIFSYLVALPEERRHLEHQQHAKEHGGH
Subjt:  MAMKQFFSEIKGLKVKELPAYVKPMLSIDSAKKAVQRGLDNYNAKYIQTGSIDPLYHVCFGGMIFSYLVALPEERRHLEHQQHAKEHGGH

XP_008453564.1 PREDICTED: uncharacterized protein LOC103494239 [Cucumis melo]

1.4e-40

93.33

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Query:  MAMKQFFSEIKGLKVKELPAYVKPMLSIDSAKKAVQRGLDNYNAKYIQTGSIDPLYHVCFGGMIFSYLVALPEERRHLEHQQHAKEHGGH
        MAMKQFFSEIKGLKVKELPAYVKPMLSID+AKK VQR LDNY+AKYIQT SIDPL+HVCFGGMIFSYLVALPEERRHLEHQQHAKEHGGH
Subjt:  MAMKQFFSEIKGLKVKELPAYVKPMLSIDSAKKAVQRGLDNYNAKYIQTGSIDPLYHVCFGGMIFSYLVALPEERRHLEHQQHAKEHGGH

XP_022974229.1 uncharacterized protein LOC111472849 [Cucurbita maxima]

5.5e-40

92.22

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Query:  MAMKQFFSEIKGLKVKELPAYVKPMLSIDSAKKAVQRGLDNYNAKYIQTGSIDPLYHVCFGGMIFSYLVALPEERRHLEHQQHAKEHGGH
        MAM+QFFSEI+GLKVKELP YVKPMLSID AKKAVQRGLDNYNAKYIQTGSIDPL HVC+GGMI SYLVALPEERRHLEHQQHAKEHGGH
Subjt:  MAMKQFFSEIKGLKVKELPAYVKPMLSIDSAKKAVQRGLDNYNAKYIQTGSIDPLYHVCFGGMIFSYLVALPEERRHLEHQQHAKEHGGH

XP_038879762.1 uncharacterized protein LOC120071511 [Benincasa hispida]

1.8e-43

98.89

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Query:  MAMKQFFSEIKGLKVKELPAYVKPMLSIDSAKKAVQRGLDNYNAKYIQTGSIDPLYHVCFGGMIFSYLVALPEERRHLEHQQHAKEHGGH
        MAMKQFFSEI+GLKVKELPAYVKPMLSIDSAKKAVQRGLDNYNAKYIQTGSIDPLYHVCFGGMIFSYLVALPEERRHLEHQQHAKEHGGH
Subjt:  MAMKQFFSEIKGLKVKELPAYVKPMLSIDSAKKAVQRGLDNYNAKYIQTGSIDPLYHVCFGGMIFSYLVALPEERRHLEHQQHAKEHGGH

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LXD4 Uncharacterized protein

4.1e-41

94.44

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Query:  MAMKQFFSEIKGLKVKELPAYVKPMLSIDSAKKAVQRGLDNYNAKYIQTGSIDPLYHVCFGGMIFSYLVALPEERRHLEHQQHAKEHGGH
        MAMKQFFSEIKGLKVKELPAYVKPMLSID+AKKAV+R LDNYNAKYIQT SIDPL HVCFGGMIFSYLVALPEERRHLEHQQHAKEHGGH
Subjt:  MAMKQFFSEIKGLKVKELPAYVKPMLSIDSAKKAVQRGLDNYNAKYIQTGSIDPLYHVCFGGMIFSYLVALPEERRHLEHQQHAKEHGGH

A0A1S3BWJ6 uncharacterized protein LOC103494239

7.0e-41

93.33

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Query:  MAMKQFFSEIKGLKVKELPAYVKPMLSIDSAKKAVQRGLDNYNAKYIQTGSIDPLYHVCFGGMIFSYLVALPEERRHLEHQQHAKEHGGH
        MAMKQFFSEIKGLKVKELPAYVKPMLSID+AKK VQR LDNY+AKYIQT SIDPL+HVCFGGMIFSYLVALPEERRHLEHQQHAKEHGGH
Subjt:  MAMKQFFSEIKGLKVKELPAYVKPMLSIDSAKKAVQRGLDNYNAKYIQTGSIDPLYHVCFGGMIFSYLVALPEERRHLEHQQHAKEHGGH

A0A5D3DYB3 Uncharacterized protein

7.0e-41

93.33

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Query:  MAMKQFFSEIKGLKVKELPAYVKPMLSIDSAKKAVQRGLDNYNAKYIQTGSIDPLYHVCFGGMIFSYLVALPEERRHLEHQQHAKEHGGH
        MAMKQFFSEIKGLKVKELPAYVKPMLSID+AKK VQR LDNY+AKYIQT SIDPL+HVCFGGMIFSYLVALPEERRHLEHQQHAKEHGGH
Subjt:  MAMKQFFSEIKGLKVKELPAYVKPMLSIDSAKKAVQRGLDNYNAKYIQTGSIDPLYHVCFGGMIFSYLVALPEERRHLEHQQHAKEHGGH

A0A6J1C4T8 uncharacterized protein LOC111007393

1.0e-39

91.11

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Query:  MAMKQFFSEIKGLKVKELPAYVKPMLSIDSAKKAVQRGLDNYNAKYIQTGSIDPLYHVCFGGMIFSYLVALPEERRHLEHQQHAKEHGGH
        MAMKQFFSEIKGLKVKELP +VKPMLSID  KKAV+RGLDNYNAKYIQTGSIDPL HVCFGGM+FSYLVALPEERRHL HQQHAKEHGGH
Subjt:  MAMKQFFSEIKGLKVKELPAYVKPMLSIDSAKKAVQRGLDNYNAKYIQTGSIDPLYHVCFGGMIFSYLVALPEERRHLEHQQHAKEHGGH

A0A6J1IH01 uncharacterized protein LOC111472849

2.6e-40

92.22

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Query:  MAMKQFFSEIKGLKVKELPAYVKPMLSIDSAKKAVQRGLDNYNAKYIQTGSIDPLYHVCFGGMIFSYLVALPEERRHLEHQQHAKEHGGH
        MAM+QFFSEI+GLKVKELP YVKPMLSID AKKAVQRGLDNYNAKYIQTGSIDPL HVC+GGMI SYLVALPEERRHLEHQQHAKEHGGH
Subjt:  MAMKQFFSEIKGLKVKELPAYVKPMLSIDSAKKAVQRGLDNYNAKYIQTGSIDPLYHVCFGGMIFSYLVALPEERRHLEHQQHAKEHGGH

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G30010.1 unknown protein

4.0e-33

67.78

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Query:  MAMKQFFSEIKGLKVKELPAYVKPMLSIDSAKKAVQRGLDNYNAKYIQTGSIDPLYHVCFGGMIFSYLVALPEERRHLEHQQHAKEHGGH
        MA+++ +SEI+G KV ELP Y+K   S+++ K +V+RGLDNYN KYIQT S+DP+ H+CF GM FSYLVALP ERRHLEHQQHAKEHGGH
Subjt:  MAMKQFFSEIKGLKVKELPAYVKPMLSIDSAKKAVQRGLDNYNAKYIQTGSIDPLYHVCFGGMIFSYLVALPEERRHLEHQQHAKEHGGH

Sequences

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CDS sequence

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ATGGCAATGAAGCAATTCTTCTCGGAAATCAAGGGCTTGAAGGTTAAGGAGCTTCCCGCCTATGTGAAGCCGATGCTCTCCATTGATTCTGCCAAGAAGGCAGTGCAGAG
AGGTCTGGACAATTACAACGCCAAGTATATTCAAACTGGTTCTATTGACCCTCTGTATCATGTTTGCTTTGGCGGTATGATCTTTTCGTACCTCGTTGCGCTTCCTGAGG
AACGGCGCCACCTTGAACATCAGCAACACGCCAAAGAACATGGTGGCCACTGA

mRNA sequence

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Protein sequence

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MAMKQFFSEIKGLKVKELPAYVKPMLSIDSAKKAVQRGLDNYNAKYIQTGSIDPLYHVCFGGMIFSYLVALPEERRHLEHQQHAKEHGGH

Lsi06G012010 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome