CuGenDBv2

Gene ID	Lsi06G012080
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	ubiquitin carboxyl-terminal hydrolase 36
Genome location	chr06:22442217..22448637
RNA-Seq Expression	Lsi06G012080
Synteny	Lsi06G012080
Gene Ontology terms	GO:0005634 - nucleus (cellular component) GO:0016787 - hydrolase activity (molecular function)
InterPro domains	IPR018800 - Proline-rich protein PRCC

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7021697.1 hypothetical protein SDJN02_15423, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.2e-18

92.45

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Query:  PAASTKGKPSKLHKRKHQITSLYYDMKQKEMELAERRARGLLTKAETQGKYGW
        PA+STKGKPSKLHKRKHQITSL+YDMKQKE ELAERRARGLLTKAETQ KYGW
Subjt:  PAASTKGKPSKLHKRKHQITSLYYDMKQKEMELAERRARGLLTKAETQGKYGW

XP_022135049.1 proline-rich protein PRCC [Momordica charantia]

8.8e-19

98.04

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Query:  ASTKGKPSKLHKRKHQITSLYYDMKQKEMELAERRARGLLTKAETQGKYGW
        ASTKGKPSKLHKRKHQITSLYYDMKQKEMELAERRARGLLTKAETQ KYGW
Subjt:  ASTKGKPSKLHKRKHQITSLYYDMKQKEMELAERRARGLLTKAETQGKYGW

XP_023002268.1 ubiquitin carboxyl-terminal hydrolase 36 [Cucurbita maxima]

1.2e-18

92.45

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Query:  PAASTKGKPSKLHKRKHQITSLYYDMKQKEMELAERRARGLLTKAETQGKYGW
        PA+STKGKPSKLHKRKHQITSL+YDMKQKE ELAERRARGLLTKAETQ KYGW
Subjt:  PAASTKGKPSKLHKRKHQITSLYYDMKQKEMELAERRARGLLTKAETQGKYGW

XP_023531022.1 ubiquitin carboxyl-terminal hydrolase 36 [Cucurbita pepo subsp. pepo]

2.6e-18

90.57

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Query:  PAASTKGKPSKLHKRKHQITSLYYDMKQKEMELAERRARGLLTKAETQGKYGW
        PA++TKGKPSKLHKRKHQITSL+YDMKQKE ELAERRARGLLTKAETQ KYGW
Subjt:  PAASTKGKPSKLHKRKHQITSLYYDMKQKEMELAERRARGLLTKAETQGKYGW

XP_038878727.1 LOW QUALITY PROTEIN: uncharacterized protein LOC120070904 [Benincasa hispida]

8.0e-20

96.23

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Query:  PAASTKGKPSKLHKRKHQITSLYYDMKQKEMELAERRARGLLTKAETQGKYGW
        PA STKGKPSKLHKRKHQI+SLYYDMKQKEMELAERRARGLLTKAETQGKYGW
Subjt:  PAASTKGKPSKLHKRKHQITSLYYDMKQKEMELAERRARGLLTKAETQGKYGW

TrEMBL top hits

e value

%identity

Alignment

A0A5A7USS5 Ubiquitin carboxyl-terminal hydrolase 36

1.6e-18

96.08

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Query:  ASTKGKPSKLHKRKHQITSLYYDMKQKEMELAERRARGLLTKAETQGKYGW
        AS KGKPSKLHKRKHQITSLYYDMKQKE ELAERRARGLLTKAETQGKYGW
Subjt:  ASTKGKPSKLHKRKHQITSLYYDMKQKEMELAERRARGLLTKAETQGKYGW

A0A5D3DZ12 Ubiquitin carboxyl-terminal hydrolase 36

1.6e-18

96.08

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Query:  ASTKGKPSKLHKRKHQITSLYYDMKQKEMELAERRARGLLTKAETQGKYGW
        AS KGKPSKLHKRKHQITSLYYDMKQKE ELAERRARGLLTKAETQGKYGW
Subjt:  ASTKGKPSKLHKRKHQITSLYYDMKQKEMELAERRARGLLTKAETQGKYGW

A0A6J1C0D7 proline-rich protein PRCC

4.3e-19

98.04

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Query:  ASTKGKPSKLHKRKHQITSLYYDMKQKEMELAERRARGLLTKAETQGKYGW
        ASTKGKPSKLHKRKHQITSLYYDMKQKEMELAERRARGLLTKAETQ KYGW
Subjt:  ASTKGKPSKLHKRKHQITSLYYDMKQKEMELAERRARGLLTKAETQGKYGW

A0A6J1EXW7 uncharacterized serine-rich protein C215.13-like

1.2e-18

90.57

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Query:  PAASTKGKPSKLHKRKHQITSLYYDMKQKEMELAERRARGLLTKAETQGKYGW
        PA++TKGKPSKLHKRKHQITSL+YDMKQKE ELAERRARGLLTKAETQ KYGW
Subjt:  PAASTKGKPSKLHKRKHQITSLYYDMKQKEMELAERRARGLLTKAETQGKYGW

A0A6J1KT25 ubiquitin carboxyl-terminal hydrolase 36

5.6e-19

92.45

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Query:  PAASTKGKPSKLHKRKHQITSLYYDMKQKEMELAERRARGLLTKAETQGKYGW
        PA+STKGKPSKLHKRKHQITSL+YDMKQKE ELAERRARGLLTKAETQ KYGW
Subjt:  PAASTKGKPSKLHKRKHQITSLYYDMKQKEMELAERRARGLLTKAETQGKYGW

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G19270.1 CONTAINS InterPro DOMAIN/s: Mitotic checkpoint protein PRCC, C-terminal (InterPro:IPR018800); Has 930 Blast hits to 533 proteins in 146 species: Archae - 0; Bacteria - 18; Metazoa - 327; Fungi - 143; Plants - 61; Viruses - 0; Other Eukaryotes - 381 (source: NCBI BLink).

4.0e-17

78.43

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Query:  ASTKGKPSKLHKRKHQITSLYYDMKQKEMELAERRARGLLTKAETQGKYGW
        +S+KGK SKLHKRKHQIT+L+ DMK KE EL ERR+RGLLTKAETQ KYGW
Subjt:  ASTKGKPSKLHKRKHQITSLYYDMKQKEMELAERRARGLLTKAETQGKYGW

Sequences

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CDS sequence

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mRNA sequence

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ATGCATTCTTGGACAACCATAATTTTGTTGCTTTTAGTAGATCCTGCTGCCTCAACTAAGGGGAAGCCTTCAAAGTTGCACAAGAGAAAGCACCAAATTACTTCGTTGTA
TTATGATATGAAGCAGAAAGAGATGGAATTAGCGGAAAGGCGTGCAAGAGGTTTACTAACAAAGGCTGAAACACAAGGGAAGTATGGCTGGTGATCCCTAAAGACATCAT
TGCTCTTGTGGTACGTGGGAAAATTTCTAGTATTCCCATAATACTAGTAATCCCTCTCCTATTATCATTAAATGATTACTTTGATGAAATCAGCCGTTCACACCTAAAAG
GGCCGAGAGACGACTTGCGTTGACCAATCTCTCTTGTGTGTGTTTTCAATTTGTGGACTCAGATACTCATGGGGCTATGTGGATCCTTAAGACCTGCAATGGCTGTTTCT
ATTTTAATCTTCAAGTAATCCCTCTCCTCTTGCTCAGCCTGCAATTCCAGAAAGTATAATTTTAATTAGATCTTGAGTTCCGCTTGTGAAGGGTTTTGGATTGTTCTTTA
AAAGCTAGATGTTATTTTATTATTGTCTTCTACTTGAATCTCACCATGTCTATAAATAGACAAAACCTTTTTAAGGTAGTACATATTCCTTCTAATTCAATTTTTCATGA
GTGTGAGCTGATTTGGATACAGATATTATTTTAAATTGTCTAT

Protein sequence

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MHSWTTIILLLLVDPAASTKGKPSKLHKRKHQITSLYYDMKQKEMELAERRARGLLTKAETQGKYGW

Lsi06G012080 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome