; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi06G012420 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi06G012420
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Genome locationchr06:22916431..22919546
RNA-Seq ExpressionLsi06G012420
SyntenyLsi06G012420
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8646115.1 hypothetical protein Csa_016498 [Cucumis sativus]1.1e-1044.24Show/hide
Query:  GGTQVVVKGALKSKNKGKSEKKQSDSKNSDAYANLNNESSGEGDYSGTESENDAPPTKKPKNSEGKKFLTETTPNFLAIAAF---ARTTAASAHAAASIA
        G    V+    ++  +    K+ S    S   A    E     DYSGT+S++DA PTK+PKNSEGKK LTE T NF A   F    R  A+ A  +A IA
Subjt:  GGTQVVVKGALKSKNKGKSEKKQSDSKNSDAYANLNNESSGEGDYSGTESENDAPPTKKPKNSEGKKFLTETTPNFLAIAAF---ARTTAASAHAAASIA

Query:  HKAAASIAHKAAASIALCTDHANAAAAAADAADAADAAADAADAAADAADAAADIVAKFADIVDIATDRIAANNHNEAVDDSEALRNL-CNHPSGYFAAL
         +  AS+A +  AS ALC D ANAA A   AADAADAAA  AD AADA D A D +A            I A +H +AVDD EA   L  NHP  Y+AAL
Subjt:  HKAAASIAHKAAASIALCTDHANAAAAAADAADAADAAADAADAAADAADAAADIVAKFADIVDIATDRIAANNHNEAVDDSEALRNL-CNHPSGYFAAL

Query:  HTAVLNALTAISKATSS
         TA+ +A  A   A S+
Subjt:  HTAVLNALTAISKATSS

KAE8646119.1 hypothetical protein Csa_016700 [Cucumis sativus]1.1e-1247.21Show/hide
Query:  NSDAYANLNNESSGEGDYSGTESENDAPPTKKPKNSEGKKFLTETTPNFLA---IAAFARTTAASAHAAASIAHKAAASIAHKAAASIALCTDHANAAAA
        N  A A+  NES  EGDYSGT+S++DA PTK+PKNS+GKK +TE TPNF A   I   A +  + A  AA +A ++ AS+A +  AS ALC D ANAA A
Subjt:  NSDAYANLNNESSGEGDYSGTESENDAPPTKKPKNSEGKKFLTETTPNFLA---IAAFARTTAASAHAAASIAHKAAASIAHKAAASIALCTDHANAAAA

Query:  AADAADAADAAADAADAAADAADAAADIVAKFADIVDIATDRIAANNHNEAVDDSEALRNL-CNHPSGYFAALHTAVLNALTAISKATSSILVARGA
              AADAAA  AD AADA D A + +A            IAA +H +AVDD EA   L  NHP  Y+AAL TA   A  A   A  +   A G+
Subjt:  AADAADAADAAADAADAAADAADAAADIVAKFADIVDIATDRIAANNHNEAVDDSEALRNL-CNHPSGYFAALHTAVLNALTAISKATSSILVARGA

XP_031744842.1 uncharacterized protein LOC105436127 isoform X1 [Cucumis sativus]5.3e-1840.69Show/hide
Query:  GKRKGENKTRASARLQVAGAPSVKKPEKQTTPIHLGSNEEVIYKYSETQVSNRDVVSTTNTKDTMLGGTQVVVKGALKSKNKGKSEKKQSDSKNSDAYAN
        GK K ENK R SAR+QVA AP +KK EKQT  IH  SNE+                                                        A A+
Subjt:  GKRKGENKTRASARLQVAGAPSVKKPEKQTTPIHLGSNEEVIYKYSETQVSNRDVVSTTNTKDTMLGGTQVVVKGALKSKNKGKSEKKQSDSKNSDAYAN

Query:  LNNESSGEGDYSGTESENDAPPTKKPKNSEGKKFLTETTPNFLA---IAAFARTTAASAHAAASIAHKAAASIAHKAAASIALCTDHANAAAAAADAADA
          NES  EGDYSGT+S++DA PTK+PKNS+GKK +TE TPNF A   I   A +  + A  AA +A ++ AS+A +  AS ALC D ANAA A      A
Subjt:  LNNESSGEGDYSGTESENDAPPTKKPKNSEGKKFLTETTPNFLA---IAAFARTTAASAHAAASIAHKAAASIAHKAAASIALCTDHANAAAAAADAADA

Query:  ADAAADAADAAADAADAAADIVAKFADIVDIATDRIAANNHNEAVDDSEALRNL-CNHPSGYFAALHTAVLNALTAISKATSSILVARGA
        ADAAA  AD AADA D A + +A            IAA +H +AVDD EA   L  NHP  Y+AAL TA   A  A   A  +   A G+
Subjt:  ADAAADAADAAADAADAAADIVAKFADIVDIATDRIAANNHNEAVDDSEALRNL-CNHPSGYFAALHTAVLNALTAISKATSSILVARGA

XP_031744843.1 uncharacterized protein LOC105436127 isoform X2 [Cucumis sativus]2.8e-1144.7Show/hide
Query:  GGTQVVVKGALKSKNKGKSEKKQSDSKNSDAYANLNNESSGEGDYSGTESENDAPPTKKPKNSEGKKFLTETTPNFLAIAAF---ARTTAASAHAAASIA
        G    V+    ++  +    K+ S    S   A    E     DYSGT+S++DA PTK+PKNSEGKK LTE T NF A   F    R  A+ A  AA IA
Subjt:  GGTQVVVKGALKSKNKGKSEKKQSDSKNSDAYANLNNESSGEGDYSGTESENDAPPTKKPKNSEGKKFLTETTPNFLAIAAF---ARTTAASAHAAASIA

Query:  HKAAASIAHKAAASIALCTDHANAAAAAADAADAADAAADAADAAADAADAAADIVAKFADIVDIATDRIAANNHNEAVDDSEALRNL-CNHPSGYFAAL
         +  AS+A +  AS ALC D ANAA A   AADAADAAA  AD AADA D A D +A            I A +H +AVDD EA   L  NHP  Y+AAL
Subjt:  HKAAASIAHKAAASIALCTDHANAAAAAADAADAADAAADAADAAADAADAAADIVAKFADIVDIATDRIAANNHNEAVDDSEALRNL-CNHPSGYFAAL

Query:  HTAVLNALTAISKATSS
         TA+ +A  A   A S+
Subjt:  HTAVLNALTAISKATSS

XP_031745079.1 uncharacterized protein LOC105436255 [Cucumis sativus]4.7e-1452.02Show/hide
Query:  NSDAYANLNNESSGEGDYSGTESENDAPPTKKPKNSEGKKFLTETTPNFLA---IAAFARTTAASAHAAASIAHKAAASIAHKAAASIALCTDHANAAAA
        N  A A+  NES  EGDYSGT+S++DA PTK+PKNS+GKK +TE TPNF A   I   A +  + A  AA +A ++ AS+A +  AS ALC D ANAA A
Subjt:  NSDAYANLNNESSGEGDYSGTESENDAPPTKKPKNSEGKKFLTETTPNFLA---IAAFARTTAASAHAAASIAHKAAASIAHKAAASIALCTDHANAAAA

Query:  AADAADAADAAADAADAAADAADAAADIVAKFADIVDIATDRIAANNHNEAVDDSEALRNL-CNHPSGYFAAL
           AADAADAAA  AD AADA DAA + +A            IAA +H +AVDD EA   L  NHP  Y+AAL
Subjt:  AADAADAADAAADAADAAADAADAAADIVAKFADIVDIATDRIAANNHNEAVDDSEALRNL-CNHPSGYFAAL

TrEMBL top hitse value%identityAlignment
No hits found
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTAGCGATGGGAAAAGAAAAGGGGAGAATAAAACAAGAGCAAGTGCAAGGTTGCAAGTAGCAGGGGCCCCCTCGGTAAAGAAACCTGAGAAACAGACAACGCCCAT
CCATTTGGGAAGCAATGAGGAGGTTATATATAAATATTCTGAGACACAAGTCTCAAATAGAGATGTAGTGAGCACAACAAACACCAAGGATACCATGCTCGGGGGAACAC
AAGTGGTTGTAAAGGGGGCCCTCAAGTCAAAAAATAAGGGAAAATCCGAGAAGAAACAATCTGATTCTAAAAATAGTGATGCATATGCAAATTTGAACAATGAAAGTTCC
GGTGAGGGGGACTATTCAGGCACGGAGTCTGAAAATGATGCACCTCCAACAAAGAAACCAAAGAATTCCGAGGGGAAAAAGTTTCTCACGGAAACTACTCCCAACTTTCT
TGCCATTGCTGCCTTCGCCCGCACCACTGCCGCCAGTGCACATGCTGCTGCTTCCATTGCTCATAAGGCTGCTGCTTCCATTGCTCATAAGGCTGCTGCTTCTATTGCCC
TCTGCACCGACCACGCCAATGCTGCTGCTGCTGCTGCTGATGCTGCTGACGCTGCTGACGCTGCTGCTGATGCTGCTGACGCTGCTGCTGACGCTGCTGATGCTGCTGCT
GATATCGTTGCAAAATTTGCTGATATTGTCGATATTGCAACTGATCGCATTGCCGCTAATAATCACAATGAAGCTGTCGATGATTCTGAAGCTCTCCGCAATTTATGTAA
CCACCCCTCTGGCTATTTCGCTGCTCTCCATACTGCTGTTTTGAATGCCCTTACTGCCATTTCAAAAGCCACAAGCTCTATACTAGTTGCCCGGGGGGCTGCAAATATCT
GCTCATTTTCCAGCTATCATTGCCAGCATCAATGCCAAAAAAAGCCATAG
mRNA sequenceShow/hide mRNA sequence
ATGCTTAGCGATGGGAAAAGAAAAGGGGAGAATAAAACAAGAGCAAGTGCAAGGTTGCAAGTAGCAGGGGCCCCCTCGGTAAAGAAACCTGAGAAACAGACAACGCCCAT
CCATTTGGGAAGCAATGAGGAGGTTATATATAAATATTCTGAGACACAAGTCTCAAATAGAGATGTAGTGAGCACAACAAACACCAAGGATACCATGCTCGGGGGAACAC
AAGTGGTTGTAAAGGGGGCCCTCAAGTCAAAAAATAAGGGAAAATCCGAGAAGAAACAATCTGATTCTAAAAATAGTGATGCATATGCAAATTTGAACAATGAAAGTTCC
GGTGAGGGGGACTATTCAGGCACGGAGTCTGAAAATGATGCACCTCCAACAAAGAAACCAAAGAATTCCGAGGGGAAAAAGTTTCTCACGGAAACTACTCCCAACTTTCT
TGCCATTGCTGCCTTCGCCCGCACCACTGCCGCCAGTGCACATGCTGCTGCTTCCATTGCTCATAAGGCTGCTGCTTCCATTGCTCATAAGGCTGCTGCTTCTATTGCCC
TCTGCACCGACCACGCCAATGCTGCTGCTGCTGCTGCTGATGCTGCTGACGCTGCTGACGCTGCTGCTGATGCTGCTGACGCTGCTGCTGACGCTGCTGATGCTGCTGCT
GATATCGTTGCAAAATTTGCTGATATTGTCGATATTGCAACTGATCGCATTGCCGCTAATAATCACAATGAAGCTGTCGATGATTCTGAAGCTCTCCGCAATTTATGTAA
CCACCCCTCTGGCTATTTCGCTGCTCTCCATACTGCTGTTTTGAATGCCCTTACTGCCATTTCAAAAGCCACAAGCTCTATACTAGTTGCCCGGGGGGCTGCAAATATCT
GCTCATTTTCCAGCTATCATTGCCAGCATCAATGCCAAAAAAAGCCATAG
Protein sequenceShow/hide protein sequence
MLSDGKRKGENKTRASARLQVAGAPSVKKPEKQTTPIHLGSNEEVIYKYSETQVSNRDVVSTTNTKDTMLGGTQVVVKGALKSKNKGKSEKKQSDSKNSDAYANLNNESS
GEGDYSGTESENDAPPTKKPKNSEGKKFLTETTPNFLAIAAFARTTAASAHAAASIAHKAAASIAHKAAASIALCTDHANAAAAAADAADAADAAADAADAAADAADAAA
DIVAKFADIVDIATDRIAANNHNEAVDDSEALRNLCNHPSGYFAALHTAVLNALTAISKATSSILVARGAANICSFSSYHCQHQCQKKP