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Lsi06G012510 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi06G012510
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionTetratricopeptide repeat protein 27-like protein
Genome locationchr06:23103726..23105219
RNA-Seq ExpressionLsi06G012510
SyntenyLsi06G012510
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYJ98349.1 tetratricopeptide repeat protein 27-like protein [Cucumis melo var. makuwa]6.0e-0988.57Show/hide
Query:  KIVRRGTRADIWGIYARWHKIKGDFTMCFEALLKQ
        +IVR GT ADIWGIYARWHKIKGDFTMC EALLKQ
Subjt:  KIVRRGTRADIWGIYARWHKIKGDFTMCFEALLKQ
XP_008455815.1 PREDICTED: tetratricopeptide repeat protein 27 homolog [Cucumis melo]6.0e-0988.57Show/hide
Query:  KIVRRGTRADIWGIYARWHKIKGDFTMCFEALLKQ
        +IVR GT ADIWGIYARWHKIKGDFTMC EALLKQ
Subjt:  KIVRRGTRADIWGIYARWHKIKGDFTMCFEALLKQ
XP_011650024.1 tetratricopeptide repeat protein 27 homolog isoform X2 [Cucumis sativus]4.6e-0988.57Show/hide
Query:  KIVRRGTRADIWGIYARWHKIKGDFTMCFEALLKQ
        +IVR GT ADIWGIYARWHKIKGDFTMC EALLKQ
Subjt:  KIVRRGTRADIWGIYARWHKIKGDFTMCFEALLKQ
XP_031736747.1 tetratricopeptide repeat protein 27 homolog isoform X1 [Cucumis sativus]1.9e-1078.57Show/hide
Query:  MSCPWGSKIVRRGTRADIWGIYARWHKIKGDFTMCFEALLKQ
        +SC   ++IVR GT ADIWGIYARWHKIKGDFTMC EALLKQ
Subjt:  MSCPWGSKIVRRGTRADIWGIYARWHKIKGDFTMCFEALLKQ
XP_038879571.1 tetratricopeptide repeat protein 27 homolog [Benincasa hispida]4.6e-0988.57Show/hide
Query:  KIVRRGTRADIWGIYARWHKIKGDFTMCFEALLKQ
        +IVR GT ADIWGIYARWHKIKGDFTMC EALLKQ
Subjt:  KIVRRGTRADIWGIYARWHKIKGDFTMCFEALLKQ
TrEMBL top hitse value%identityAlignment
A0A0A0LQK0 TPR_REGION domain-containing protein2.2e-0988.57Show/hide
Query:  KIVRRGTRADIWGIYARWHKIKGDFTMCFEALLKQ
        +IVR GT ADIWGIYARWHKIKGDFTMC EALLKQ
Subjt:  KIVRRGTRADIWGIYARWHKIKGDFTMCFEALLKQ
A0A1S3C1C8 tetratricopeptide repeat protein 27 homolog2.9e-0988.57Show/hide
Query:  KIVRRGTRADIWGIYARWHKIKGDFTMCFEALLKQ
        +IVR GT ADIWGIYARWHKIKGDFTMC EALLKQ
Subjt:  KIVRRGTRADIWGIYARWHKIKGDFTMCFEALLKQ
A0A5A7ST37 Tetratricopeptide repeat protein 27-like protein2.9e-0988.57Show/hide
Query:  KIVRRGTRADIWGIYARWHKIKGDFTMCFEALLKQ
        +IVR GT ADIWGIYARWHKIKGDFTMC EALLKQ
Subjt:  KIVRRGTRADIWGIYARWHKIKGDFTMCFEALLKQ
A0A5D3BH33 Tetratricopeptide repeat protein 27-like protein2.9e-0988.57Show/hide
Query:  KIVRRGTRADIWGIYARWHKIKGDFTMCFEALLKQ
        +IVR GT ADIWGIYARWHKIKGDFTMC EALLKQ
Subjt:  KIVRRGTRADIWGIYARWHKIKGDFTMCFEALLKQ
A0A6J1EWM5 tetratricopeptide repeat protein 27 homolog4.9e-0985.71Show/hide
Query:  KIVRRGTRADIWGIYARWHKIKGDFTMCFEALLKQ
        +IVR GT ADIWGIYARWHKIKGD+TMC EALLKQ
Subjt:  KIVRRGTRADIWGIYARWHKIKGDFTMCFEALLKQ
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G17270.1 Protein prenylyltransferase superfamily protein2.4e-0862.86Show/hide
Query:  KIVRRGTRADIWGIYARWHKIKGDFTMCFEALLKQ
        +IV+  + A+IWG+YARW +IKGD T+C EALLKQ
Subjt:  KIVRRGTRADIWGIYARWHKIKGDFTMCFEALLKQ
AT5G37130.1 Protein prenylyltransferase superfamily protein3.0e-0654.29Show/hide
Query:  KIVRRGTRADIWGIYARWHKIKGDFTMCFEALLKQ
        +IV+  +  + WG+YARW +I GD T+C EALLKQ
Subjt:  KIVRRGTRADIWGIYARWHKIKGDFTMCFEALLKQ

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCGGGCTGCAAAGGAGTGAGATATCCCATAATGAGCTGTCCTTGGGGTAGTAAAATTGTTCGACGTGGGACTAGAGCAGACATATGGGGCATATATGCAAGGTGGCA
TAAAATTAAAGGAGACTTCACAATGTGCTTCGAGGCCCTTCTAAAGCAAGGTCTTCATGCATATACCATCAACTACGAATAG
mRNA sequenceShow/hide mRNA sequence
ATGCCGGGCTGCAAAGGAGTGAGATATCCCATAATGAGCTGTCCTTGGGGTAGTAAAATTGTTCGACGTGGGACTAGAGCAGACATATGGGGCATATATGCAAGGTGGCA
TAAAATTAAAGGAGACTTCACAATGTGCTTCGAGGCCCTTCTAAAGCAAGGTCTTCATGCATATACCATCAACTACGAATAG
Protein sequenceShow/hide protein sequence
MPGCKGVRYPIMSCPWGSKIVRRGTRADIWGIYARWHKIKGDFTMCFEALLKQGLHAYTINYE