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Lsi06G012910 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi06G012910
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRab family
Genome locationchr06:23471122..23471376
RNA-Seq ExpressionLsi06G012910
SyntenyLsi06G012910
Gene Ontology termsGO:0006886 - intracellular protein transport (biological process)
GO:0005768 - endosome (cellular component)
GO:0003924 - GTPase activity (molecular function)
GO:0005525 - GTP binding (molecular function)
InterPro domainsIPR001806 - Small GTPase
IPR005225 - Small GTP-binding protein domain
IPR027417 - P-loop containing nucleoside triphosphate hydrolase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7021646.1 Ras-related protein RABA6b, partial [Cucurbita argyrosperma subsp. argyrosperma]5.7e-3194.52Show/hide
Query:  MADSLDEECDYLFKAVLTGDSGVGKSNLLSRFAKNEFRFDSKPTIGVEFAYRNIKVADKLIKTQIWDTAGQER
        MADS DEECDYLFKAVLTGDSGVGKSNLLSRFA+ EFR DSKPTIGVEFAYRNIKVADKLIKTQIWDTAGQER
Subjt:  MADSLDEECDYLFKAVLTGDSGVGKSNLLSRFAKNEFRFDSKPTIGVEFAYRNIKVADKLIKTQIWDTAGQER

XP_004137339.1 ras-related protein RABA6a [Cucumis sativus]3.0e-3294.52Show/hide
Query:  MADSLDEECDYLFKAVLTGDSGVGKSNLLSRFAKNEFRFDSKPTIGVEFAYRNIKVADKLIKTQIWDTAGQER
        MADSLDE+CDYLFKAVLTGDSGVGKSNLLSRF+KNEFRFDS+PTIGVEFAYRNIKVADKL+KTQIWDTAGQER
Subjt:  MADSLDEECDYLFKAVLTGDSGVGKSNLLSRFAKNEFRFDSKPTIGVEFAYRNIKVADKLIKTQIWDTAGQER

XP_008453474.1 PREDICTED: ras-related protein RABA6a-like [Cucumis melo]1.3e-3295.89Show/hide
Query:  MADSLDEECDYLFKAVLTGDSGVGKSNLLSRFAKNEFRFDSKPTIGVEFAYRNIKVADKLIKTQIWDTAGQER
        MADSLDEECDYLFKAVLTGDSGVGKSNLLSRF+KNEFRFDS+PTIGVEFAYRNIKVADKL+KTQIWDTAGQER
Subjt:  MADSLDEECDYLFKAVLTGDSGVGKSNLLSRFAKNEFRFDSKPTIGVEFAYRNIKVADKLIKTQIWDTAGQER

XP_023529393.1 ras-related protein RABA6b-like [Cucurbita pepo subsp. pepo]5.7e-3194.52Show/hide
Query:  MADSLDEECDYLFKAVLTGDSGVGKSNLLSRFAKNEFRFDSKPTIGVEFAYRNIKVADKLIKTQIWDTAGQER
        MADS DEECDYLFKAVLTGDSGVGKSNLLSRFA+ EFR DSKPTIGVEFAYRNIKVADKLIKTQIWDTAGQER
Subjt:  MADSLDEECDYLFKAVLTGDSGVGKSNLLSRFAKNEFRFDSKPTIGVEFAYRNIKVADKLIKTQIWDTAGQER

XP_038880228.1 LOW QUALITY PROTEIN: ras-related protein RABA6a-like [Benincasa hispida]6.7e-3295.89Show/hide
Query:  MADSLDEECDYLFKAVLTGDSGVGKSNLLSRFAKNEFRFDSKPTIGVEFAYRNIKVADKLIKTQIWDTAGQER
        M D LDEECDYLFKAVLTGDSGVGKSNLLSRFAKNEFRFDSKPTIGVEFAYRNIK+ADKLIKTQIWDTAGQER
Subjt:  MADSLDEECDYLFKAVLTGDSGVGKSNLLSRFAKNEFRFDSKPTIGVEFAYRNIKVADKLIKTQIWDTAGQER

TrEMBL top hitse value%identityAlignment
A0A0A0LS89 Uncharacterized protein1.5e-3294.52Show/hide
Query:  MADSLDEECDYLFKAVLTGDSGVGKSNLLSRFAKNEFRFDSKPTIGVEFAYRNIKVADKLIKTQIWDTAGQER
        MADSLDE+CDYLFKAVLTGDSGVGKSNLLSRF+KNEFRFDS+PTIGVEFAYRNIKVADKL+KTQIWDTAGQER
Subjt:  MADSLDEECDYLFKAVLTGDSGVGKSNLLSRFAKNEFRFDSKPTIGVEFAYRNIKVADKLIKTQIWDTAGQER

A0A1S3BWB9 ras-related protein RABA6a-like6.5e-3395.89Show/hide
Query:  MADSLDEECDYLFKAVLTGDSGVGKSNLLSRFAKNEFRFDSKPTIGVEFAYRNIKVADKLIKTQIWDTAGQER
        MADSLDEECDYLFKAVLTGDSGVGKSNLLSRF+KNEFRFDS+PTIGVEFAYRNIKVADKL+KTQIWDTAGQER
Subjt:  MADSLDEECDYLFKAVLTGDSGVGKSNLLSRFAKNEFRFDSKPTIGVEFAYRNIKVADKLIKTQIWDTAGQER

A0A444ZU36 Uncharacterized protein6.1e-3191.78Show/hide
Query:  MADSLDEECDYLFKAVLTGDSGVGKSNLLSRFAKNEFRFDSKPTIGVEFAYRNIKVADKLIKTQIWDTAGQER
        MAD+ DEECDYLFKAVL GDSGVGKSNLLSRFAK+EFRFDSKPTIGVEFAYRNIK+ADKLIK QIWDTAGQER
Subjt:  MADSLDEECDYLFKAVLTGDSGVGKSNLLSRFAKNEFRFDSKPTIGVEFAYRNIKVADKLIKTQIWDTAGQER

A0A6J1F0C2 ras-related protein RABA6b-like2.7e-3194.52Show/hide
Query:  MADSLDEECDYLFKAVLTGDSGVGKSNLLSRFAKNEFRFDSKPTIGVEFAYRNIKVADKLIKTQIWDTAGQER
        MADS DEECDYLFKAVLTGDSGVGKSNLLSRFA+ EFR DSKPTIGVEFAYRNIKVADKLIKTQIWDTAGQER
Subjt:  MADSLDEECDYLFKAVLTGDSGVGKSNLLSRFAKNEFRFDSKPTIGVEFAYRNIKVADKLIKTQIWDTAGQER

A0A6J1KQ67 ras-related protein RABA6a-like2.7e-3194.52Show/hide
Query:  MADSLDEECDYLFKAVLTGDSGVGKSNLLSRFAKNEFRFDSKPTIGVEFAYRNIKVADKLIKTQIWDTAGQER
        MADS DEECDYLFKAVLTGDSGVGKSNLLSRFA+ EFR DSKPTIGVEFAYRNIKVADKLIKTQIWDTAGQER
Subjt:  MADSLDEECDYLFKAVLTGDSGVGKSNLLSRFAKNEFRFDSKPTIGVEFAYRNIKVADKLIKTQIWDTAGQER

SwissProt top hitse value%identityAlignment
Q0WQN4 Ras-related protein RABA6b2.1e-2880.28Show/hide
Query:  DSLDEECDYLFKAVLTGDSGVGKSNLLSRFAKNEFRFDSKPTIGVEFAYRNIKVADKLIKTQIWDTAGQER
        +S DEECDYLFKAVL GDS VGKSNLLSRF+++EFR DSKPTIGV+FAYRN++V DK IK QIWDTAGQER
Subjt:  DSLDEECDYLFKAVLTGDSGVGKSNLLSRFAKNEFRFDSKPTIGVEFAYRNIKVADKLIKTQIWDTAGQER

Q1PEX3 Ras-related protein RABA1h4.5e-2372.06Show/hide
Query:  DEECDYLFKAVLTGDSGVGKSNLLSRFAKNEFRFDSKPTIGVEFAYRNIKVADKLIKTQIWDTAGQER
        +++ DYLFK VLTGDSGVGKSNLLSRF +N+F  DS+ TIGVEFA R+I+V DK++K QIWDTAGQER
Subjt:  DEECDYLFKAVLTGDSGVGKSNLLSRFAKNEFRFDSKPTIGVEFAYRNIKVADKLIKTQIWDTAGQER

Q9C9U7 Ras-related protein RABA6a1.9e-2983.1Show/hide
Query:  DSLDEECDYLFKAVLTGDSGVGKSNLLSRFAKNEFRFDSKPTIGVEFAYRNIKVADKLIKTQIWDTAGQER
        D+ +EECDYLFKAVL GDS VGKSNLLSRF+K+EFRFDSKPTIGVEFAYRN+ V DK+IK QIWDTAGQER
Subjt:  DSLDEECDYLFKAVLTGDSGVGKSNLLSRFAKNEFRFDSKPTIGVEFAYRNIKVADKLIKTQIWDTAGQER

Q9FJH0 Ras-related protein RABA1f2.6e-2375Show/hide
Query:  DEECDYLFKAVLTGDSGVGKSNLLSRFAKNEFRFDSKPTIGVEFAYRNIKVADKLIKTQIWDTAGQER
        D+E DYLFK VL GDSGVGKSNLLSRF +NEF  +SK TIGVEFA R+I V DK++K QIWDTAGQER
Subjt:  DEECDYLFKAVLTGDSGVGKSNLLSRFAKNEFRFDSKPTIGVEFAYRNIKVADKLIKTQIWDTAGQER

Q9FK68 Ras-related protein RABA1c1.5e-2376.47Show/hide
Query:  DEECDYLFKAVLTGDSGVGKSNLLSRFAKNEFRFDSKPTIGVEFAYRNIKVADKLIKTQIWDTAGQER
        D+E DYLFK VL GDSGVGKSNLLSRF KNEF  +SK TIGVEFA R++ V DK+IK QIWDTAGQER
Subjt:  DEECDYLFKAVLTGDSGVGKSNLLSRFAKNEFRFDSKPTIGVEFAYRNIKVADKLIKTQIWDTAGQER

Arabidopsis top hitse value%identityAlignment
AT1G18200.1 RAB GTPase homolog A6B1.5e-2980.28Show/hide
Query:  DSLDEECDYLFKAVLTGDSGVGKSNLLSRFAKNEFRFDSKPTIGVEFAYRNIKVADKLIKTQIWDTAGQER
        +S DEECDYLFKAVL GDS VGKSNLLSRF+++EFR DSKPTIGV+FAYRN++V DK IK QIWDTAGQER
Subjt:  DSLDEECDYLFKAVLTGDSGVGKSNLLSRFAKNEFRFDSKPTIGVEFAYRNIKVADKLIKTQIWDTAGQER

AT1G73640.1 RAB GTPase homolog A6A1.3e-3083.1Show/hide
Query:  DSLDEECDYLFKAVLTGDSGVGKSNLLSRFAKNEFRFDSKPTIGVEFAYRNIKVADKLIKTQIWDTAGQER
        D+ +EECDYLFKAVL GDS VGKSNLLSRF+K+EFRFDSKPTIGVEFAYRN+ V DK+IK QIWDTAGQER
Subjt:  DSLDEECDYLFKAVLTGDSGVGKSNLLSRFAKNEFRFDSKPTIGVEFAYRNIKVADKLIKTQIWDTAGQER

AT2G33870.1 RAB GTPase homolog A1H3.2e-2472.06Show/hide
Query:  DEECDYLFKAVLTGDSGVGKSNLLSRFAKNEFRFDSKPTIGVEFAYRNIKVADKLIKTQIWDTAGQER
        +++ DYLFK VLTGDSGVGKSNLLSRF +N+F  DS+ TIGVEFA R+I+V DK++K QIWDTAGQER
Subjt:  DEECDYLFKAVLTGDSGVGKSNLLSRFAKNEFRFDSKPTIGVEFAYRNIKVADKLIKTQIWDTAGQER

AT5G45750.1 RAB GTPase homolog A1C1.1e-2476.47Show/hide
Query:  DEECDYLFKAVLTGDSGVGKSNLLSRFAKNEFRFDSKPTIGVEFAYRNIKVADKLIKTQIWDTAGQER
        D+E DYLFK VL GDSGVGKSNLLSRF KNEF  +SK TIGVEFA R++ V DK+IK QIWDTAGQER
Subjt:  DEECDYLFKAVLTGDSGVGKSNLLSRFAKNEFRFDSKPTIGVEFAYRNIKVADKLIKTQIWDTAGQER

AT5G60860.1 RAB GTPase homolog A1F1.9e-2475Show/hide
Query:  DEECDYLFKAVLTGDSGVGKSNLLSRFAKNEFRFDSKPTIGVEFAYRNIKVADKLIKTQIWDTAGQER
        D+E DYLFK VL GDSGVGKSNLLSRF +NEF  +SK TIGVEFA R+I V DK++K QIWDTAGQER
Subjt:  DEECDYLFKAVLTGDSGVGKSNLLSRFAKNEFRFDSKPTIGVEFAYRNIKVADKLIKTQIWDTAGQER


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGATTCGTTGGACGAAGAGTGCGATTATCTGTTCAAGGCGGTTCTGACGGGCGATTCCGGCGTCGGAAAATCCAATCTCCTCTCTCGTTTTGCCAAAAACGAATT
CCGATTCGACTCTAAACCGACAATCGGCGTGGAGTTCGCTTACCGGAATATTAAGGTCGCCGATAAGCTCATCAAAACCCAAATCTGGGACACCGCCGGCCAAGAAAGGT
CGATCTTCTTCTCCCTTCTTCTTCTTCTTCTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGGATTCGTTGGACGAAGAGTGCGATTATCTGTTCAAGGCGGTTCTGACGGGCGATTCCGGCGTCGGAAAATCCAATCTCCTCTCTCGTTTTGCCAAAAACGAATT
CCGATTCGACTCTAAACCGACAATCGGCGTGGAGTTCGCTTACCGGAATATTAAGGTCGCCGATAAGCTCATCAAAACCCAAATCTGGGACACCGCCGGCCAAGAAAGGT
CGATCTTCTTCTCCCTTCTTCTTCTTCTTCTTTAA
Protein sequenceShow/hide protein sequence
MADSLDEECDYLFKAVLTGDSGVGKSNLLSRFAKNEFRFDSKPTIGVEFAYRNIKVADKLIKTQIWDTAGQERSIFFSLLLLLL