CuGenDBv2

Gene ID	Lsi06G012920
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	ras-related protein RABA6a-like
Genome location	chr06:23472540..23476343
RNA-Seq Expression	Lsi06G012920
Synteny	Lsi06G012920
Gene Ontology terms	GO:0006886 - intracellular protein transport (biological process) GO:0012505 - endomembrane system (cellular component) GO:0003924 - GTPase activity (molecular function) GO:0005525 - GTP binding (molecular function)
InterPro domains	IPR001806 - Small GTPase IPR005225 - Small GTP-binding protein domain IPR027417 - P-loop containing nucleoside triphosphate hydrolase

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

CAG25544.1 putative Ras-related GTP-binding protein, partial [Cucumis sativus]

4.4e-63

86.3

Show/hide

Query:  FRAITSSYYRGALGALLVYDITRMTTFDNVKKWLRELREFGNSDMVIILIGNKCDLDQSREVQEEEAQRLAEFEDLFFMETSAKNNVNVEEAFLEMVRRI
        FRAITSSYYRGALGALLVYDITR+ TFDN+KKWLRELREFGN +MVIIL+GNKCDL QSREVQEEEA+ LAE E+LFFMETSAK+N+NVEEAFLEMVRRI
Subjt:  FRAITSSYYRGALGALLVYDITRMTTFDNVKKWLRELREFGNSDMVIILIGNKCDLDQSREVQEEEAQRLAEFEDLFFMETSAKNNVNVEEAFLEMVRRI

Query:  HAIASQKSLDNLHTNFEKLVAFPNGKEILSIHEVTPTKTNSYCCSL
        HAIASQK+LD LH  FEKLVAFPNGKEI+SIHEVTPTK NS CCSL
Subjt:  HAIASQKSLDNLHTNFEKLVAFPNGKEILSIHEVTPTKTNSYCCSL

XP_004137339.1 ras-related protein RABA6a [Cucumis sativus]

5.8e-63

86.3

Show/hide

Query:  FRAITSSYYRGALGALLVYDITRMTTFDNVKKWLRELREFGNSDMVIILIGNKCDLDQSREVQEEEAQRLAEFEDLFFMETSAKNNVNVEEAFLEMVRRI
        FRAITSSYYRGALGALLVYDITR+ TFDN+KKWLRELREFGN +MVIIL+GNKCDL QSREVQEEEA+ LAE E+LFFMETSAK+N+NVEEAFLEMVRRI
Subjt:  FRAITSSYYRGALGALLVYDITRMTTFDNVKKWLRELREFGNSDMVIILIGNKCDLDQSREVQEEEAQRLAEFEDLFFMETSAKNNVNVEEAFLEMVRRI

Query:  HAIASQKSLDNLHTNFEKLVAFPNGKEILSIHEVTPTKTNSYCCSL
        HAIASQK+LD LH  FEKLVAFPNGKEI+SIHEVTPTK NS CCSL
Subjt:  HAIASQKSLDNLHTNFEKLVAFPNGKEILSIHEVTPTKTNSYCCSL

XP_008453474.1 PREDICTED: ras-related protein RABA6a-like [Cucumis melo]

2.1e-60

84.14

Show/hide

Query:  FRAITSSYYRGALGALLVYDITRMTTFDNVKKWLRELREFGNSDMVIILIGNKCDLDQSREVQEEEAQRLAEFEDLFFMETSAKNNVNVEEAFLEMVRRI
        FRAITSSYYRGALGALLVYDITR+ TFDN+KKWLRELREFGN DMVIIL+GNKCDL QSREVQEEEA+ LAE E+L FMETSAK+N+NVEEAFLEMVRRI
Subjt:  FRAITSSYYRGALGALLVYDITRMTTFDNVKKWLRELREFGNSDMVIILIGNKCDLDQSREVQEEEAQRLAEFEDLFFMETSAKNNVNVEEAFLEMVRRI

Query:  HAIASQKSLDNLHTNFEKLVAFPNGKEILSIHEVTPTKTNSYCCS
        HAIASQK+LD LH    KLV FPNGKEI+SIHEVTPTK+NS CCS
Subjt:  HAIASQKSLDNLHTNFEKLVAFPNGKEILSIHEVTPTKTNSYCCS

XP_023529393.1 ras-related protein RABA6b-like [Cucurbita pepo subsp. pepo]

6.0e-60

84.25

Show/hide

Query:  FRAITSSYYRGALGALLVYDITRMTTFDNVKKWLRELREFGNSDMVIILIGNKCDLDQSREVQEEEAQRLAEFEDLFFMETSAKNNVNVEEAFLEMVRRI
        FRAITSSYYRGALGALLVYDITR  TF+NVKKWLRELR+FGNSDMVI+L+GNK DL  SREV+EEE +RLAE EDLFFMETSA +NVNVEEAFLEMVRRI
Subjt:  FRAITSSYYRGALGALLVYDITRMTTFDNVKKWLRELREFGNSDMVIILIGNKCDLDQSREVQEEEAQRLAEFEDLFFMETSAKNNVNVEEAFLEMVRRI

Query:  HAIASQKSLDNLHTNFEKLVAFPNGKEILSIHEVTPTKTNSYCCSL
        HAIASQKSL NL    EKLVAFPNGKEI+SIHEVTPTK NSYCC L
Subjt:  HAIASQKSLDNLHTNFEKLVAFPNGKEILSIHEVTPTKTNSYCCSL

XP_038880228.1 LOW QUALITY PROTEIN: ras-related protein RABA6a-like [Benincasa hispida]

4.0e-64

88.28

Show/hide

Query:  FRAITSSYYRGALGALLVYDITRMTTFDNVKKWLRELREFGNSDMVIILIGNKCDLDQSREVQEEEAQRLAEFEDLFFMETSAKNNVNVEEAFLEMVRRI
        FRAITSSYYRGALGALLVYDITR+ TFDNVKKWL ELRE GNSDMVIIL+GNKCDLDQ REV+EEEA+ LAE EDLFFMETSAK+NVNVEEAFLEMVRRI
Subjt:  FRAITSSYYRGALGALLVYDITRMTTFDNVKKWLRELREFGNSDMVIILIGNKCDLDQSREVQEEEAQRLAEFEDLFFMETSAKNNVNVEEAFLEMVRRI

Query:  HAIASQKSLDNLHTNFEKLVAFPNGKEILSIHEVTPTKTNSYCCS
        H IASQK+LD  HTNFEKL+AFPNGKEILSIHEVTPTK NSYCCS
Subjt:  HAIASQKSLDNLHTNFEKLVAFPNGKEILSIHEVTPTKTNSYCCS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LS89 Uncharacterized protein

2.8e-63

86.3

Show/hide

Query:  FRAITSSYYRGALGALLVYDITRMTTFDNVKKWLRELREFGNSDMVIILIGNKCDLDQSREVQEEEAQRLAEFEDLFFMETSAKNNVNVEEAFLEMVRRI
        FRAITSSYYRGALGALLVYDITR+ TFDN+KKWLRELREFGN +MVIIL+GNKCDL QSREVQEEEA+ LAE E+LFFMETSAK+N+NVEEAFLEMVRRI
Subjt:  FRAITSSYYRGALGALLVYDITRMTTFDNVKKWLRELREFGNSDMVIILIGNKCDLDQSREVQEEEAQRLAEFEDLFFMETSAKNNVNVEEAFLEMVRRI

Query:  HAIASQKSLDNLHTNFEKLVAFPNGKEILSIHEVTPTKTNSYCCSL
        HAIASQK+LD LH  FEKLVAFPNGKEI+SIHEVTPTK NS CCSL
Subjt:  HAIASQKSLDNLHTNFEKLVAFPNGKEILSIHEVTPTKTNSYCCSL

A0A1S3BWB9 ras-related protein RABA6a-like

1.0e-60

84.14

Show/hide

Query:  FRAITSSYYRGALGALLVYDITRMTTFDNVKKWLRELREFGNSDMVIILIGNKCDLDQSREVQEEEAQRLAEFEDLFFMETSAKNNVNVEEAFLEMVRRI
        FRAITSSYYRGALGALLVYDITR+ TFDN+KKWLRELREFGN DMVIIL+GNKCDL QSREVQEEEA+ LAE E+L FMETSAK+N+NVEEAFLEMVRRI
Subjt:  FRAITSSYYRGALGALLVYDITRMTTFDNVKKWLRELREFGNSDMVIILIGNKCDLDQSREVQEEEAQRLAEFEDLFFMETSAKNNVNVEEAFLEMVRRI

Query:  HAIASQKSLDNLHTNFEKLVAFPNGKEILSIHEVTPTKTNSYCCS
        HAIASQK+LD LH    KLV FPNGKEI+SIHEVTPTK+NS CCS
Subjt:  HAIASQKSLDNLHTNFEKLVAFPNGKEILSIHEVTPTKTNSYCCS

A0A6J1BZG6 ras-related protein RABA6b

4.6e-58

80.14

Show/hide

Query:  FRAITSSYYRGALGALLVYDITRMTTFDNVKKWLRELREFGNSDMVIILIGNKCDLDQSREVQEEEAQRLAEFEDLFFMETSAKNNVNVEEAFLEMVRRI
        FRAITSSYYRGALGALLVYD+TR+ TF+NVKKWLRELREFGNSDMVIIL+GNKCDL  SREVQEEE + LAE E LFFMETSA  NVNVEE FL+MVRRI
Subjt:  FRAITSSYYRGALGALLVYDITRMTTFDNVKKWLRELREFGNSDMVIILIGNKCDLDQSREVQEEEAQRLAEFEDLFFMETSAKNNVNVEEAFLEMVRRI

Query:  HAIASQKSLDNLHTNFEKLVAFPNGKEILSIHEVTPTKTNSYCCSL
        H IASQK+LD L    EKL AFPNGKEI+SIH+VTPTK +SYCCS+
Subjt:  HAIASQKSLDNLHTNFEKLVAFPNGKEILSIHEVTPTKTNSYCCSL

A0A6J1KQ67 ras-related protein RABA6a-like

4.9e-60

83.56

Show/hide

Query:  FRAITSSYYRGALGALLVYDITRMTTFDNVKKWLRELREFGNSDMVIILIGNKCDLDQSREVQEEEAQRLAEFEDLFFMETSAKNNVNVEEAFLEMVRRI
        FRAITSSYYRGALGALLVYDITR  TF+NVKKWLRELR+FGNSDMVI+L+GNK DL+ SREV+EEE +RLAE EDLFFMETSA +NVNVEEAFLEMVRRI
Subjt:  FRAITSSYYRGALGALLVYDITRMTTFDNVKKWLRELREFGNSDMVIILIGNKCDLDQSREVQEEEAQRLAEFEDLFFMETSAKNNVNVEEAFLEMVRRI

Query:  HAIASQKSLDNLHTNFEKLVAFPNGKEILSIHEVTPTKTNSYCCSL
        HAIASQKSL NL    EK VAFPNG EI+SIHEVTPTK NSYCCSL
Subjt:  HAIASQKSLDNLHTNFEKLVAFPNGKEILSIHEVTPTKTNSYCCSL

Q6ZYK8 Putative Ras-related GTP-binding protein (Fragment)

2.1e-63

86.3

Show/hide

Query:  FRAITSSYYRGALGALLVYDITRMTTFDNVKKWLRELREFGNSDMVIILIGNKCDLDQSREVQEEEAQRLAEFEDLFFMETSAKNNVNVEEAFLEMVRRI
        FRAITSSYYRGALGALLVYDITR+ TFDN+KKWLRELREFGN +MVIIL+GNKCDL QSREVQEEEA+ LAE E+LFFMETSAK+N+NVEEAFLEMVRRI
Subjt:  FRAITSSYYRGALGALLVYDITRMTTFDNVKKWLRELREFGNSDMVIILIGNKCDLDQSREVQEEEAQRLAEFEDLFFMETSAKNNVNVEEAFLEMVRRI

Query:  HAIASQKSLDNLHTNFEKLVAFPNGKEILSIHEVTPTKTNSYCCSL
        HAIASQK+LD LH  FEKLVAFPNGKEI+SIHEVTPTK NS CCSL
Subjt:  HAIASQKSLDNLHTNFEKLVAFPNGKEILSIHEVTPTKTNSYCCSL

SwissProt top hits

e value

%identity

Alignment

O49513 Ras-related protein RABA1e

1.1e-29

48.3

Show/hide

Query:  FRAITSSYYRGALGALLVYDITRMTTFDNVKKWLRELREFGNSDMVIILIGNKCDLDQSREVQEEEAQRLAEFEDLFFMETSAKNNVNVEEAFLEMVRRI
        +RAITS+YYRGA+GALLVYDITR  TF+NV++WL+ELR+  ++++VI+L+GNK DL   R V  EEA+  +E E++FFMETSA +  NVE+AF  ++ +I
Subjt:  FRAITSSYYRGALGALLVYDITRMTTFDNVKKWLRELREFGNSDMVIILIGNKCDLDQSREVQEEEAQRLAEFEDLFFMETSAKNNVNVEEAFLEMVRRI

Query:  HAIASQKSLDNLHTNFEKLVAFPNGK--EILSIHEVTPTKTNSYCCS
        + + S+K+LD         ++ P G+  +I +  +VT  K +S CCS
Subjt:  HAIASQKSLDNLHTNFEKLVAFPNGK--EILSIHEVTPTKTNSYCCS

P28185 Ras-related protein RABA1a

2.0e-29

46.9

Show/hide

Query:  FRAITSSYYRGALGALLVYDITRMTTFDNVKKWLRELREFGNSDMVIILIGNKCDLDQSREVQEEEAQRLAEFEDLFFMETSAKNNVNVEEAFLEMVRRI
        +RAITS+YYRGA+GALL+YD+TR  TF+N  +WLRELR   + ++V++LIGNKCDL     V+ EEA+  AE E L+FMETSA +  NVE AF E++ +I
Subjt:  FRAITSSYYRGALGALLVYDITRMTTFDNVKKWLRELREFGNSDMVIILIGNKCDLDQSREVQEEEAQRLAEFEDLFFMETSAKNNVNVEEAFLEMVRRI

Query:  HAIASQKSLDNLHTNFEKLVAFPNGKEILSIHEVTPTKTNSYCCS
        H I S++S+D    + +     P   E +++ E         CCS
Subjt:  HAIASQKSLDNLHTNFEKLVAFPNGKEILSIHEVTPTKTNSYCCS

Q0WQN4 Ras-related protein RABA6b

1.6e-39

58.17

Show/hide

Query:  FRAITSSYYRGALGALLVYDITRMTTFDNVKKWLRELREFGNSDMVIILIGNKCDLDQSREVQEEEAQRLAEFEDLFFMETSAKNNVNVEEAFLEMVRRI
        FRAITSSYYRGALGALL+YDITR  TF N++KWL ELR F + + V++L+GNK DL QSREV+EEE + LAE E L+F+ETSA  N NVEEAFL M+ RI
Subjt:  FRAITSSYYRGALGALLVYDITRMTTFDNVKKWLRELREFGNSDMVIILIGNKCDLDQSREVQEEEAQRLAEFEDLFFMETSAKNNVNVEEAFLEMVRRI

Query:  HAIASQK-SLDNL----HTNFEKLVAFPNGKEILSIHEVTPTK----TNSYCC
        H + +QK  LDN       N       P GKEI++IHEVT T+    + S CC
Subjt:  HAIASQK-SLDNL----HTNFEKLVAFPNGKEILSIHEVTPTK----TNSYCC

Q1PEX3 Ras-related protein RABA1h

1.1e-29

46.94

Show/hide

Query:  FRAITSSYYRGALGALLVYDITRMTTFDNVKKWLRELREFGNSDMVIILIGNKCDLDQSREVQEEEAQRLAEFEDLFFMETSAKNNVNVEEAFLEMVRRI
        +RAITS+YYRGA+GALLVYD+TR  TF+NV++WL+ELR+  +++ VI+L+GNK DL+  R +  EE +  AE E+ FFMETSA   +NVE AF E++ +I
Subjt:  FRAITSSYYRGALGALLVYDITRMTTFDNVKKWLRELREFGNSDMVIILIGNKCDLDQSREVQEEEAQRLAEFEDLFFMETSAKNNVNVEEAFLEMVRRI

Query:  HAIASQKSLDNLHTNFEKLVAFPNGK--EILSIHEVTPTKTNSYCCS
        + + S+K+LD      +   A P G+   + S  +V+  K  S CC+
Subjt:  HAIASQKSLDNLHTNFEKLVAFPNGK--EILSIHEVTPTKTNSYCCS

Q9C9U7 Ras-related protein RABA6a

1.7e-41

56.69

Show/hide

Query:  FRAITSSYYRGALGALLVYDITRMTTFDNVKKWLRELREFGNSDMVIILIGNKCDLDQSREVQEEEAQRLAEFEDLFFMETSAKNNVNVEEAFLEMVRRI
        FRAITSSYYRGALGALL+YDITR TTFDN+KKWL ELR+F N + V++L+GNK DL QSREV+E+E + LAE E L+F+ETSA  NVNVEEAFL M+ RI
Subjt:  FRAITSSYYRGALGALLVYDITRMTTFDNVKKWLRELREFGNSDMVIILIGNKCDLDQSREVQEEEAQRLAEFEDLFFMETSAKNNVNVEEAFLEMVRRI

Query:  HAIASQKSLDNLHTNFEKL---------VAFPNGKEILSIHEVTPTK----TNSYCC
        H + +Q+      +N                P GKEI++IHEVT T+    ++S CC
Subjt:  HAIASQKSLDNLHTNFEKL---------VAFPNGKEILSIHEVTPTK----TNSYCC

Arabidopsis top hits

e value

%identity

Alignment

AT1G06400.1 Ras-related small GTP-binding family protein

1.4e-30

46.9

Show/hide

Query:  FRAITSSYYRGALGALLVYDITRMTTFDNVKKWLRELREFGNSDMVIILIGNKCDLDQSREVQEEEAQRLAEFEDLFFMETSAKNNVNVEEAFLEMVRRI
        +RAITS+YYRGA+GALL+YD+TR  TF+N  +WLRELR   + ++V++LIGNKCDL     V+ EEA+  AE E L+FMETSA +  NVE AF E++ +I
Subjt:  FRAITSSYYRGALGALLVYDITRMTTFDNVKKWLRELREFGNSDMVIILIGNKCDLDQSREVQEEEAQRLAEFEDLFFMETSAKNNVNVEEAFLEMVRRI

Query:  HAIASQKSLDNLHTNFEKLVAFPNGKEILSIHEVTPTKTNSYCCS
        H I S++S+D    + +     P   E +++ E         CCS
Subjt:  HAIASQKSLDNLHTNFEKLVAFPNGKEILSIHEVTPTKTNSYCCS

AT1G18200.1 RAB GTPase homolog A6B

1.1e-40

58.17

Show/hide

Query:  FRAITSSYYRGALGALLVYDITRMTTFDNVKKWLRELREFGNSDMVIILIGNKCDLDQSREVQEEEAQRLAEFEDLFFMETSAKNNVNVEEAFLEMVRRI
        FRAITSSYYRGALGALL+YDITR  TF N++KWL ELR F + + V++L+GNK DL QSREV+EEE + LAE E L+F+ETSA  N NVEEAFL M+ RI
Subjt:  FRAITSSYYRGALGALLVYDITRMTTFDNVKKWLRELREFGNSDMVIILIGNKCDLDQSREVQEEEAQRLAEFEDLFFMETSAKNNVNVEEAFLEMVRRI

Query:  HAIASQK-SLDNL----HTNFEKLVAFPNGKEILSIHEVTPTK----TNSYCC
        H + +QK  LDN       N       P GKEI++IHEVT T+    + S CC
Subjt:  HAIASQK-SLDNL----HTNFEKLVAFPNGKEILSIHEVTPTK----TNSYCC

AT1G73640.1 RAB GTPase homolog A6A

1.2e-42

56.69

Show/hide

Query:  FRAITSSYYRGALGALLVYDITRMTTFDNVKKWLRELREFGNSDMVIILIGNKCDLDQSREVQEEEAQRLAEFEDLFFMETSAKNNVNVEEAFLEMVRRI
        FRAITSSYYRGALGALL+YDITR TTFDN+KKWL ELR+F N + V++L+GNK DL QSREV+E+E + LAE E L+F+ETSA  NVNVEEAFL M+ RI
Subjt:  FRAITSSYYRGALGALLVYDITRMTTFDNVKKWLRELREFGNSDMVIILIGNKCDLDQSREVQEEEAQRLAEFEDLFFMETSAKNNVNVEEAFLEMVRRI

Query:  HAIASQKSLDNLHTNFEKL---------VAFPNGKEILSIHEVTPTK----TNSYCC
        H + +Q+      +N                P GKEI++IHEVT T+    ++S CC
Subjt:  HAIASQKSLDNLHTNFEKL---------VAFPNGKEILSIHEVTPTK----TNSYCC

AT2G33870.1 RAB GTPase homolog A1H

8.1e-31

46.94

Show/hide

Query:  FRAITSSYYRGALGALLVYDITRMTTFDNVKKWLRELREFGNSDMVIILIGNKCDLDQSREVQEEEAQRLAEFEDLFFMETSAKNNVNVEEAFLEMVRRI
        +RAITS+YYRGA+GALLVYD+TR  TF+NV++WL+ELR+  +++ VI+L+GNK DL+  R +  EE +  AE E+ FFMETSA   +NVE AF E++ +I
Subjt:  FRAITSSYYRGALGALLVYDITRMTTFDNVKKWLRELREFGNSDMVIILIGNKCDLDQSREVQEEEAQRLAEFEDLFFMETSAKNNVNVEEAFLEMVRRI

Query:  HAIASQKSLDNLHTNFEKLVAFPNGK--EILSIHEVTPTKTNSYCCS
        + + S+K+LD      +   A P G+   + S  +V+  K  S CC+
Subjt:  HAIASQKSLDNLHTNFEKLVAFPNGK--EILSIHEVTPTKTNSYCCS

AT4G18430.1 RAB GTPase homolog A1E

8.1e-31

48.3

Show/hide

Query:  FRAITSSYYRGALGALLVYDITRMTTFDNVKKWLRELREFGNSDMVIILIGNKCDLDQSREVQEEEAQRLAEFEDLFFMETSAKNNVNVEEAFLEMVRRI
        +RAITS+YYRGA+GALLVYDITR  TF+NV++WL+ELR+  ++++VI+L+GNK DL   R V  EEA+  +E E++FFMETSA +  NVE+AF  ++ +I
Subjt:  FRAITSSYYRGALGALLVYDITRMTTFDNVKKWLRELREFGNSDMVIILIGNKCDLDQSREVQEEEAQRLAEFEDLFFMETSAKNNVNVEEAFLEMVRRI

Query:  HAIASQKSLDNLHTNFEKLVAFPNGK--EILSIHEVTPTKTNSYCCS
        + + S+K+LD         ++ P G+  +I +  +VT  K +S CCS
Subjt:  HAIASQKSLDNLHTNFEKLVAFPNGK--EILSIHEVTPTKTNSYCCS

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGGATTTAGGGCAATTACAAGTTCTTATTATCGAGGAGCATTAGGAGCGTTGCTTGTGTACGACATAACTCGAATGACTACATTTGATAACGTAAAGAAATGGCTACG
AGAATTGAGGGAGTTCGGGAATTCAGACATGGTGATCATTCTAATTGGAAACAAATGTGATTTAGATCAATCTCGTGAAGTGCAAGAAGAAGAAGCACAACGTTTAGCAG
AGTTCGAAGACTTATTTTTCATGGAAACTTCTGCAAAGAACAATGTGAATGTGGAAGAGGCATTCCTTGAAATGGTTCGTAGGATCCATGCCATTGCATCCCAAAAGTCT
TTGGATAATTTGCATACAAATTTTGAAAAGCTTGTTGCTTTTCCAAATGGAAAAGAAATTCTTAGTATTCATGAAGTAACTCCAACCAAAACCAATTCATATTGTTGTTC
TTTATGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MGFRAITSSYYRGALGALLVYDITRMTTFDNVKKWLRELREFGNSDMVIILIGNKCDLDQSREVQEEEAQRLAEFEDLFFMETSAKNNVNVEEAFLEMVRRIHAIASQKS
LDNLHTNFEKLVAFPNGKEILSIHEVTPTKTNSYCCSL

Lsi06G012920 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome