; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi06G013380 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi06G013380
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionAT-rich interactive domain protein
Genome locationchr06:23967351..23968910
RNA-Seq ExpressionLsi06G013380
SyntenyLsi06G013380
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004138240.1 uncharacterized protein LOC101218989 [Cucumis sativus]9.8e-9088.5Show/hide
Query:  MALTITNGGATGGTGGGILYRTSTRTPSNQFLFRRNALFPPSKEARTLHVAQAKKSSFRTGRFDSKNRRSSTTTKEQEEEDERNRTAEILSDSPNVENAG
        M LTITNGGAT GT GGILYRT TRTPSN FLFRRNALF PSKEARTLH+ QAKKSSFRTGRFDSKNR+SSTT KEQEEE+ERNRTA +   SP VENAG
Subjt:  MALTITNGGATGGTGGGILYRTSTRTPSNQFLFRRNALFPPSKEARTLHVAQAKKSSFRTGRFDSKNRRSSTTTKEQEEEDERNRTAEILSDSPNVENAG

Query:  VAFDVDENLPELPGLQPDFWEGPQWDALGFFLEYLWAFGIVFALIACGIAVTTYNEGATDFKDTPAYKESVQTREILEEPEASNPDVFESNPTEVAPSLE
        V FDVDENLP+LPGLQPDFWEGPQWDA GFFLEYLWAFGIVFA+IACGIAVTTYNEGATDFK+TPAYKESVQTREIL EPEASNPDVFESNPTEVAPSLE
Subjt:  VAFDVDENLPELPGLQPDFWEGPQWDALGFFLEYLWAFGIVFALIACGIAVTTYNEGATDFKDTPAYKESVQTREILEEPEASNPDVFESNPTEVAPSLE

XP_008453388.1 PREDICTED: uncharacterized protein LOC103494120 [Cucumis melo]8.3e-8990.15Show/hide
Query:  MALTITNGGATGGTGGGILYRTSTRT-PSNQFLFRRNALFPPSKEARTLHVAQAKKSSFRTGRFDSKNRRSSTTTKEQ--EEEDERNRTAEILSDSPNVE
        M LTITNGGAT GT GGILYRT TRT PSN FLFRRNALF PSKEARTLHV QAKKSSFRTGRFDSKNRRSSTT KEQ  EEE+ERNRTA I   SP VE
Subjt:  MALTITNGGATGGTGGGILYRTSTRT-PSNQFLFRRNALFPPSKEARTLHVAQAKKSSFRTGRFDSKNRRSSTTTKEQ--EEEDERNRTAEILSDSPNVE

Query:  NAGVAFDVDENLPELPGLQPDFWEGPQWDALGFFLEYLWAFGIVFALIACGIAVTTYNEGATDFKDTPAYKESVQTREILEEPEASNPDVFESNPTEVAP
        NAGV FDVDENLPELPGLQPDFWEGPQWDALGFFLEYLWAFGIVFALIACGIAVTTYNEGATDFK+TPAYKESVQTREIL EPEASNPDVFESNPTEVAP
Subjt:  NAGVAFDVDENLPELPGLQPDFWEGPQWDALGFFLEYLWAFGIVFALIACGIAVTTYNEGATDFKDTPAYKESVQTREILEEPEASNPDVFESNPTEVAP

Query:  SLE
        SLE
Subjt:  SLE

XP_022134616.1 uncharacterized protein LOC111006843 [Momordica charantia]2.3e-9491.04Show/hide
Query:  MALTITNGGATGGTGGGILYRTSTRTPSNQFLFRRNALFPPSKEARTLHVAQAKKSSFRTGRFDSKNRRSSTTTKEQ-EEEDERNRTAEILSDSPNVENA
        MALTITNGGA GG+GGGILYRTST+ PSNQFL RRNALFPPS EARTLHV QAKKSSFRTGRFDSKNRRSSTTTKEQ EEE+ERNR AEI  D PNVENA
Subjt:  MALTITNGGATGGTGGGILYRTSTRTPSNQFLFRRNALFPPSKEARTLHVAQAKKSSFRTGRFDSKNRRSSTTTKEQ-EEEDERNRTAEILSDSPNVENA

Query:  GVAFDVDENLPELPGLQPDFWEGPQWDALGFFLEYLWAFGIVFALIACGIAVTTYNEGATDFKDTPAYKESVQTREILEEPEASNPDVFESNPTEVAPSL
        GVAFDVDENLPELPGLQPDFWEGP+WD LGFFLEYLWAFGI FALIACGIAVTTYNEGATDFKDTPAYKESVQT+E+LEEPEASNPDVFESNPTEVAPSL
Subjt:  GVAFDVDENLPELPGLQPDFWEGPQWDALGFFLEYLWAFGIVFALIACGIAVTTYNEGATDFKDTPAYKESVQTREILEEPEASNPDVFESNPTEVAPSL

Query:  E
        E
Subjt:  E

XP_022987248.1 uncharacterized protein LOC111484859 [Cucurbita maxima]2.4e-8888.12Show/hide
Query:  MALTITNGGATGGTGGGILYRTSTRTPSNQFLFRRNALFPPSKEARTLHVAQAKKSSFRTGRFDSKNRRSSTTTKEQE--EEDERNRTAEILSDSPNVEN
        MALTITNGGAT GTGGGILYRTSTRTPSNQFLFRRNALF PSKEARTLHV  +KKSSFR GR DSKNRRSST+TKEQE  EE+ERNR AEI       EN
Subjt:  MALTITNGGATGGTGGGILYRTSTRTPSNQFLFRRNALFPPSKEARTLHVAQAKKSSFRTGRFDSKNRRSSTTTKEQE--EEDERNRTAEILSDSPNVEN

Query:  AGVAFDVDENLPELPGLQPDFWEGPQWDALGFFLEYLWAFGIVFALIACGIAVTTYNEGATDFKDTPAYKESVQTREILEEPEASNPDVFESNPTEVAPS
        AGVAFDVDENLPELPGLQPDFWEG QWD LGFFLEYLWAFGI FA+IACGIAVTTYNEGATDFKDTPAYKESVQT+EILEEPEASNPDVFESNPTEVAPS
Subjt:  AGVAFDVDENLPELPGLQPDFWEGPQWDALGFFLEYLWAFGIVFALIACGIAVTTYNEGATDFKDTPAYKESVQTREILEEPEASNPDVFESNPTEVAPS

Query:  LE
        LE
Subjt:  LE

XP_038876354.1 uncharacterized protein LOC120068690 [Benincasa hispida]5.2e-9996Show/hide
Query:  MALTITNGGATGGTGGGILYRTSTRTPSNQFLFRRNALFPPSKEARTLHVAQAKKSSFRTGRFDSKNRRSSTTTKEQEEEDERNRTAEILSDSPNVENAG
        MALTITNGGATGGTGGGILYR+STRTPSNQFL RRNALFPPSKEARTL+V QAKKSSFRTGRFD KNRRSSTTT+EQEEE ERNRTAEIL DSPNVENAG
Subjt:  MALTITNGGATGGTGGGILYRTSTRTPSNQFLFRRNALFPPSKEARTLHVAQAKKSSFRTGRFDSKNRRSSTTTKEQEEEDERNRTAEILSDSPNVENAG

Query:  VAFDVDENLPELPGLQPDFWEGPQWDALGFFLEYLWAFGIVFALIACGIAVTTYNEGATDFKDTPAYKESVQTREILEEPEASNPDVFESNPTEVAPSLE
        VAFDVDENLPELPGLQPDFWEGPQWDALGFFLEYLWAFGIVFALIACGIAVTTYNEGATDFKDTPAYKESVQTREILEEPEASNPDVFESNPTEVAPSLE
Subjt:  VAFDVDENLPELPGLQPDFWEGPQWDALGFFLEYLWAFGIVFALIACGIAVTTYNEGATDFKDTPAYKESVQTREILEEPEASNPDVFESNPTEVAPSLE

TrEMBL top hitse value%identityAlignment
A0A0A0LPS1 Uncharacterized protein4.7e-9088.5Show/hide
Query:  MALTITNGGATGGTGGGILYRTSTRTPSNQFLFRRNALFPPSKEARTLHVAQAKKSSFRTGRFDSKNRRSSTTTKEQEEEDERNRTAEILSDSPNVENAG
        M LTITNGGAT GT GGILYRT TRTPSN FLFRRNALF PSKEARTLH+ QAKKSSFRTGRFDSKNR+SSTT KEQEEE+ERNRTA +   SP VENAG
Subjt:  MALTITNGGATGGTGGGILYRTSTRTPSNQFLFRRNALFPPSKEARTLHVAQAKKSSFRTGRFDSKNRRSSTTTKEQEEEDERNRTAEILSDSPNVENAG

Query:  VAFDVDENLPELPGLQPDFWEGPQWDALGFFLEYLWAFGIVFALIACGIAVTTYNEGATDFKDTPAYKESVQTREILEEPEASNPDVFESNPTEVAPSLE
        V FDVDENLP+LPGLQPDFWEGPQWDA GFFLEYLWAFGIVFA+IACGIAVTTYNEGATDFK+TPAYKESVQTREIL EPEASNPDVFESNPTEVAPSLE
Subjt:  VAFDVDENLPELPGLQPDFWEGPQWDALGFFLEYLWAFGIVFALIACGIAVTTYNEGATDFKDTPAYKESVQTREILEEPEASNPDVFESNPTEVAPSLE

A0A1S3BW57 uncharacterized protein LOC1034941204.0e-8990.15Show/hide
Query:  MALTITNGGATGGTGGGILYRTSTRT-PSNQFLFRRNALFPPSKEARTLHVAQAKKSSFRTGRFDSKNRRSSTTTKEQ--EEEDERNRTAEILSDSPNVE
        M LTITNGGAT GT GGILYRT TRT PSN FLFRRNALF PSKEARTLHV QAKKSSFRTGRFDSKNRRSSTT KEQ  EEE+ERNRTA I   SP VE
Subjt:  MALTITNGGATGGTGGGILYRTSTRT-PSNQFLFRRNALFPPSKEARTLHVAQAKKSSFRTGRFDSKNRRSSTTTKEQ--EEEDERNRTAEILSDSPNVE

Query:  NAGVAFDVDENLPELPGLQPDFWEGPQWDALGFFLEYLWAFGIVFALIACGIAVTTYNEGATDFKDTPAYKESVQTREILEEPEASNPDVFESNPTEVAP
        NAGV FDVDENLPELPGLQPDFWEGPQWDALGFFLEYLWAFGIVFALIACGIAVTTYNEGATDFK+TPAYKESVQTREIL EPEASNPDVFESNPTEVAP
Subjt:  NAGVAFDVDENLPELPGLQPDFWEGPQWDALGFFLEYLWAFGIVFALIACGIAVTTYNEGATDFKDTPAYKESVQTREILEEPEASNPDVFESNPTEVAP

Query:  SLE
        SLE
Subjt:  SLE

A0A5A7UV79 Putative AT-rich interactive domain-containing protein 5A4.0e-8990.15Show/hide
Query:  MALTITNGGATGGTGGGILYRTSTRT-PSNQFLFRRNALFPPSKEARTLHVAQAKKSSFRTGRFDSKNRRSSTTTKEQ--EEEDERNRTAEILSDSPNVE
        M LTITNGGAT GT GGILYRT TRT PSN FLFRRNALF PSKEARTLHV QAKKSSFRTGRFDSKNRRSSTT KEQ  EEE+ERNRTA I   SP VE
Subjt:  MALTITNGGATGGTGGGILYRTSTRT-PSNQFLFRRNALFPPSKEARTLHVAQAKKSSFRTGRFDSKNRRSSTTTKEQ--EEEDERNRTAEILSDSPNVE

Query:  NAGVAFDVDENLPELPGLQPDFWEGPQWDALGFFLEYLWAFGIVFALIACGIAVTTYNEGATDFKDTPAYKESVQTREILEEPEASNPDVFESNPTEVAP
        NAGV FDVDENLPELPGLQPDFWEGPQWDALGFFLEYLWAFGIVFALIACGIAVTTYNEGATDFK+TPAYKESVQTREIL EPEASNPDVFESNPTEVAP
Subjt:  NAGVAFDVDENLPELPGLQPDFWEGPQWDALGFFLEYLWAFGIVFALIACGIAVTTYNEGATDFKDTPAYKESVQTREILEEPEASNPDVFESNPTEVAP

Query:  SLE
        SLE
Subjt:  SLE

A0A6J1BYA9 uncharacterized protein LOC1110068431.1e-9491.04Show/hide
Query:  MALTITNGGATGGTGGGILYRTSTRTPSNQFLFRRNALFPPSKEARTLHVAQAKKSSFRTGRFDSKNRRSSTTTKEQ-EEEDERNRTAEILSDSPNVENA
        MALTITNGGA GG+GGGILYRTST+ PSNQFL RRNALFPPS EARTLHV QAKKSSFRTGRFDSKNRRSSTTTKEQ EEE+ERNR AEI  D PNVENA
Subjt:  MALTITNGGATGGTGGGILYRTSTRTPSNQFLFRRNALFPPSKEARTLHVAQAKKSSFRTGRFDSKNRRSSTTTKEQ-EEEDERNRTAEILSDSPNVENA

Query:  GVAFDVDENLPELPGLQPDFWEGPQWDALGFFLEYLWAFGIVFALIACGIAVTTYNEGATDFKDTPAYKESVQTREILEEPEASNPDVFESNPTEVAPSL
        GVAFDVDENLPELPGLQPDFWEGP+WD LGFFLEYLWAFGI FALIACGIAVTTYNEGATDFKDTPAYKESVQT+E+LEEPEASNPDVFESNPTEVAPSL
Subjt:  GVAFDVDENLPELPGLQPDFWEGPQWDALGFFLEYLWAFGIVFALIACGIAVTTYNEGATDFKDTPAYKESVQTREILEEPEASNPDVFESNPTEVAPSL

Query:  E
        E
Subjt:  E

A0A6J1JIX0 uncharacterized protein LOC1114848591.2e-8888.12Show/hide
Query:  MALTITNGGATGGTGGGILYRTSTRTPSNQFLFRRNALFPPSKEARTLHVAQAKKSSFRTGRFDSKNRRSSTTTKEQE--EEDERNRTAEILSDSPNVEN
        MALTITNGGAT GTGGGILYRTSTRTPSNQFLFRRNALF PSKEARTLHV  +KKSSFR GR DSKNRRSST+TKEQE  EE+ERNR AEI       EN
Subjt:  MALTITNGGATGGTGGGILYRTSTRTPSNQFLFRRNALFPPSKEARTLHVAQAKKSSFRTGRFDSKNRRSSTTTKEQE--EEDERNRTAEILSDSPNVEN

Query:  AGVAFDVDENLPELPGLQPDFWEGPQWDALGFFLEYLWAFGIVFALIACGIAVTTYNEGATDFKDTPAYKESVQTREILEEPEASNPDVFESNPTEVAPS
        AGVAFDVDENLPELPGLQPDFWEG QWD LGFFLEYLWAFGI FA+IACGIAVTTYNEGATDFKDTPAYKESVQT+EILEEPEASNPDVFESNPTEVAPS
Subjt:  AGVAFDVDENLPELPGLQPDFWEGPQWDALGFFLEYLWAFGIVFALIACGIAVTTYNEGATDFKDTPAYKESVQTREILEEPEASNPDVFESNPTEVAPS

Query:  LE
        LE
Subjt:  LE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G73885.1 unknown protein1.6e-2941.5Show/hide
Query:  MALTITNGGATGGTGGGILYRTSTRTPSNQFLFRRNALFPPSKEARTLHVAQAKKSSFRTGRFDSKNRRSSTTTKEQEEEDERNRTAEILSDSPNVENAG
        MALT+++G      GGG   R +  T S++  F    L      +RT    +  +       FD +N  S     + E+ D          D  +     
Subjt:  MALTITNGGATGGTGGGILYRTSTRTPSNQFLFRRNALFPPSKEARTLHVAQAKKSSFRTGRFDSKNRRSSTTTKEQEEEDERNRTAEILSDSPNVENAG

Query:  VAFDVDENLPELPGLQPDFWEGPQWDALGFFLEYLWAFGIVFALIACGIAVTTYNEGATDFKDTPAYKESVQTREILEEPEASN-PDVFESNPTEVAPSL
        +         +LPGL+PD +EG +WD LGFF++YLWAFGI+FALI+ G+A  TYNEGATDFK+TP YKE++Q+R++L+E E+SN  DVFESNPTEVAP++
Subjt:  VAFDVDENLPELPGLQPDFWEGPQWDALGFFLEYLWAFGIVFALIACGIAVTTYNEGATDFKDTPAYKESVQTREILEEPEASN-PDVFESNPTEVAPSL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCTGACCATAACCAACGGCGGTGCCACCGGCGGCACCGGCGGGGGAATTCTCTACAGAACCTCCACTAGAACTCCTTCTAACCAATTCCTATTCCGCCGCAACGC
GCTCTTTCCGCCGTCCAAAGAAGCCCGCACCCTCCATGTCGCTCAAGCCAAGAAATCCTCCTTCCGAACCGGCCGATTCGACAGTAAGAATCGGAGGAGCTCGACGACAA
CCAAGGAACAGGAAGAAGAAGACGAACGAAATCGGACGGCCGAGATTTTAAGCGACAGCCCCAACGTTGAAAATGCTGGCGTAGCGTTTGATGTGGATGAGAATCTGCCG
GAATTGCCCGGGCTTCAGCCTGATTTCTGGGAGGGTCCGCAGTGGGATGCCCTAGGCTTCTTCCTGGAGTATTTGTGGGCTTTTGGCATCGTTTTCGCACTTATTGCATG
TGGGATTGCTGTCACTACATATAACGAAGGAGCAACTGATTTCAAGGACACACCTGCATATAAAGAATCAGTTCAAACTCGAGAGATATTAGAAGAACCCGAGGCATCAA
ACCCAGATGTGTTTGAATCTAATCCAACTGAGGTGGCTCCAAGTTTGGAATGA
mRNA sequenceShow/hide mRNA sequence
AATGAATCGCATATCTCTCCCCTTATCCGCACGTAAAATCCTCTTCATTCTCCGAGTGTTCAGAGCTCACTCTCCTCCACTCAAATGGCTCTGACCATAACCAACGGCGG
TGCCACCGGCGGCACCGGCGGGGGAATTCTCTACAGAACCTCCACTAGAACTCCTTCTAACCAATTCCTATTCCGCCGCAACGCGCTCTTTCCGCCGTCCAAAGAAGCCC
GCACCCTCCATGTCGCTCAAGCCAAGAAATCCTCCTTCCGAACCGGCCGATTCGACAGTAAGAATCGGAGGAGCTCGACGACAACCAAGGAACAGGAAGAAGAAGACGAA
CGAAATCGGACGGCCGAGATTTTAAGCGACAGCCCCAACGTTGAAAATGCTGGCGTAGCGTTTGATGTGGATGAGAATCTGCCGGAATTGCCCGGGCTTCAGCCTGATTT
CTGGGAGGGTCCGCAGTGGGATGCCCTAGGCTTCTTCCTGGAGTATTTGTGGGCTTTTGGCATCGTTTTCGCACTTATTGCATGTGGGATTGCTGTCACTACATATAACG
AAGGAGCAACTGATTTCAAGGACACACCTGCATATAAAGAATCAGTTCAAACTCGAGAGATATTAGAAGAACCCGAGGCATCAAACCCAGATGTGTTTGAATCTAATCCA
ACTGAGGTGGCTCCAAGTTTGGAATGATCTTTGATATTTTGATATCAAAAACAGATTACACATCTTGGATACATTATCATCCTCCCAAGCAGTTAAAGAAGTGAAAAAGA
AACAAAGGGTACTGTGTGAATTTGTAATGCCATATTTTTCTAGGTATGTTATGACAACTTTATTTTATTGTATCTAGTTAACATTTTGATCGTATATGTCTTAGTTTTCT
TGTCAACATATTGTTTTTCTTTTAGGTCTTTCTTCTGTAACCTCGTCGACTTAGATTTCTCTCCTTAGGCTGTCTGTTTTAGGGAACAAGGGATAACACAAAACAGAGAA
CCATTTTTCTGCCAGCTTCTAAGAGGCTCGAATTGGTCGGGTGCAAATATTAAAATGCTAAGGAAACAACGTTATTTTGTTAAGAGAGTATTTAGCCAAAACAATCTAGT
AGAAGTCTAATAATTGATTTCAATAAAGTACTACCCCATA
Protein sequenceShow/hide protein sequence
MALTITNGGATGGTGGGILYRTSTRTPSNQFLFRRNALFPPSKEARTLHVAQAKKSSFRTGRFDSKNRRSSTTTKEQEEEDERNRTAEILSDSPNVENAGVAFDVDENLP
ELPGLQPDFWEGPQWDALGFFLEYLWAFGIVFALIACGIAVTTYNEGATDFKDTPAYKESVQTREILEEPEASNPDVFESNPTEVAPSLE